Wall clock time and date at job start Mon Mar 30 2020 01:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46965 * 2 1 4 4 H 1.08998 * 109.47218 * 305.19633 * 3 2 1 5 5 N 1.46505 * 109.47026 * 185.19856 * 3 2 1 6 6 S 1.65597 * 119.99826 * 96.38391 * 5 3 2 7 7 O 1.42108 * 106.40092 * 178.38649 * 6 5 3 8 8 O 1.42100 * 106.40454 * 311.30828 * 6 5 3 9 9 C 1.76197 * 107.21620 * 64.84896 * 6 5 3 10 10 H 1.07997 * 120.00238 * 359.97438 * 9 6 5 11 11 C 1.37883 * 119.99855 * 179.97438 * 9 6 5 12 12 N 1.31517 * 120.00171 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 120.00040 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.47207 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47225 * 120.00218 * 13 11 9 16 16 H 1.48500 * 109.47111 * 240.00278 * 13 11 9 17 17 C 1.50697 * 109.47026 * 65.19927 * 3 2 1 18 18 C 1.38674 * 120.41885 * 259.99935 * 17 3 2 19 19 C 1.38622 * 118.41879 * 180.02562 * 18 17 3 20 20 C 1.38223 * 119.16653 * 0.02562 * 19 18 17 21 21 N 1.31858 * 120.76065 * 359.97438 * 20 19 18 22 22 C 1.31884 * 121.72437 * 359.70536 * 21 20 19 23 23 H 1.08999 * 109.47033 * 294.24991 * 1 2 3 24 24 H 1.08998 * 109.46886 * 174.24223 * 1 2 3 25 25 H 1.09006 * 109.46923 * 54.25165 * 1 2 3 26 26 H 1.08997 * 109.47259 * 119.99899 * 2 1 3 27 27 H 1.09008 * 109.47180 * 240.00363 * 2 1 3 28 28 H 0.96996 * 119.99456 * 276.38708 * 5 3 2 29 29 H 0.97001 * 120.00076 * 180.02562 * 12 11 9 30 30 H 1.08001 * 120.78821 * 359.97438 * 18 17 3 31 31 H 1.08001 * 120.41626 * 180.02562 * 19 18 17 32 32 H 1.07995 * 119.62170 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.61400 * 180.30824 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6026 1.9826 -0.8398 5 7 3.4997 1.4445 -0.1252 6 16 4.2030 1.6480 -1.6104 7 8 5.6075 1.6407 -1.3937 8 8 3.5479 0.7461 -2.4917 9 6 3.7934 3.2700 -2.1636 10 1 3.1843 3.9134 -1.5461 11 6 4.2506 3.7178 -3.3849 12 7 4.9920 2.9341 -4.1372 13 14 3.8158 5.4371 -3.9717 14 1 2.9769 6.1118 -2.9489 15 1 5.0612 6.2177 -4.1832 16 1 3.0641 5.3487 -5.2493 17 6 1.6455 2.1148 1.2898 18 6 0.5464 2.9593 1.3338 19 6 0.2211 3.5562 2.5419 20 6 0.9978 3.2922 3.6544 21 7 2.0363 2.4835 3.5755 22 6 2.3714 1.8935 2.4446 23 1 -0.3633 0.4221 0.9370 24 1 -0.3633 -1.0225 -0.1031 25 1 -0.3633 0.6004 -0.8341 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 4.0540 1.3265 0.6620 29 1 5.3139 3.2493 -4.9962 30 1 -0.0416 3.1480 0.4478 31 1 -0.6285 4.2191 2.6130 32 1 0.7513 3.7536 4.5992 33 1 3.2259 1.2335 2.4197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994023.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:54 Heat of formation + Delta-G solvation = -95.601595 kcal Electronic energy + Delta-G solvation = -18942.057814 eV Core-core repulsion = 15899.557831 eV Total energy + Delta-G solvation = -3042.499983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.26387 -37.91473 -37.26240 -36.13432 -35.19805 -33.43819 -32.75718 -31.65733 -28.27903 -26.75773 -24.59382 -23.88395 -21.74442 -21.05162 -19.40650 -18.53501 -18.04038 -17.30971 -17.12476 -16.55805 -15.97769 -15.86918 -15.54745 -15.32141 -14.82237 -14.31374 -14.02191 -13.90898 -13.62051 -13.35702 -13.08508 -13.02680 -12.89743 -12.51300 -12.43411 -12.39983 -12.29446 -12.17996 -11.64690 -11.27576 -11.02448 -10.70864 -10.38926 -10.26973 -9.87396 -8.76799 -7.49451 0.14904 0.32234 0.44000 1.32054 1.33477 1.50524 2.19574 2.57009 2.84471 2.99416 3.43508 3.71067 3.78674 3.91723 4.03665 4.13391 4.18630 4.32936 4.39676 4.51504 4.60048 4.66680 4.87375 4.92008 5.01894 5.14584 5.23162 5.25869 5.31665 5.36136 5.51296 5.81407 5.88782 6.29842 6.77455 7.05107 8.20098 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.006956 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.377444 B = 4024.247233 C = 4529.537688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.200 3.800 4 H 0.089 0.911 5 N -1.118 6.118 6 S 2.720 3.280 7 O -1.047 7.047 8 O -1.034 7.034 9 C -1.039 5.039 10 H 0.118 0.882 11 C 0.071 3.929 12 N -0.893 5.893 13 Si 0.988 3.012 14 H -0.246 1.246 15 H -0.262 1.262 16 H -0.257 1.257 17 C -0.135 4.135 18 C -0.074 4.074 19 C -0.160 4.160 20 C 0.083 3.917 21 N -0.507 5.507 22 C 0.091 3.909 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.412 0.588 29 H 0.299 0.701 30 H 0.153 0.847 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.849 2.091 11.471 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.092 3.908 4 H 0.107 0.893 5 N -0.875 5.875 6 S 2.821 3.179 7 O -1.037 7.037 8 O -1.023 7.023 9 C -1.172 5.172 10 H 0.137 0.863 11 C -0.142 4.142 12 N -0.525 5.525 13 Si 0.806 3.194 14 H -0.169 1.169 15 H -0.186 1.186 16 H -0.181 1.181 17 C -0.139 4.139 18 C -0.101 4.101 19 C -0.180 4.180 20 C -0.074 4.074 21 N -0.216 5.216 22 C -0.066 4.066 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.246 0.754 29 H 0.109 0.891 30 H 0.171 0.829 31 H 0.188 0.812 32 H 0.200 0.800 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.814 1.209 11.462 16.505 hybrid contribution -0.088 1.070 -0.943 1.429 sum -11.902 2.280 10.520 16.047 Atomic orbital electron populations 1.21719 0.93266 1.02824 1.02351 1.22064 0.98025 0.94932 1.02783 1.19677 0.79041 0.96704 0.95373 0.89301 1.55611 1.14046 1.91180 1.26673 0.99919 0.71271 0.75968 0.70707 1.93315 1.34835 1.89847 1.85716 1.93317 1.76808 1.67443 1.64772 1.30907 1.47123 1.25087 1.14090 0.86339 1.25990 0.89743 1.04276 0.94178 1.69993 1.29899 1.39636 1.12952 0.85137 0.79566 0.75436 0.79283 1.16926 1.18643 1.18066 1.20933 0.97741 0.99370 0.95854 1.21831 0.95083 0.93265 0.99877 1.22470 1.02071 1.00845 0.92577 1.23333 0.90082 0.93837 1.00155 1.67711 1.17105 1.08983 1.27811 1.22565 0.98763 0.97499 0.87737 0.91709 0.91323 0.92212 0.90604 0.92260 0.75354 0.89092 0.82932 0.81233 0.80036 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.50 71.98 0.68 -2.59 16 2 C -0.14 -4.08 5.71 30.60 0.17 -3.90 16 3 C 0.20 6.54 2.47 44.25 0.11 6.65 16 4 H 0.09 3.07 7.73 -2.39 -0.02 3.06 16 5 N -1.12 -43.60 5.42 -172.51 -0.93 -44.53 16 6 S 2.72 144.54 4.92 -56.49 -0.28 144.26 16 7 O -1.05 -62.94 18.02 -128.00 -2.31 -65.25 16 8 O -1.03 -60.00 17.38 -128.00 -2.22 -62.23 16 9 C -1.04 -56.33 9.58 67.74 0.65 -55.68 16 10 H 0.12 5.80 7.81 -2.91 -0.02 5.78 16 11 C 0.07 3.91 5.46 84.66 0.46 4.38 16 12 N -0.89 -53.01 13.19 21.45 0.28 -52.72 16 13 Si 0.99 40.71 29.54 68.60 2.03 42.74 16 14 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 15 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 16 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 17 C -0.14 -3.72 4.25 -19.77 -0.08 -3.80 16 18 C -0.07 -1.65 9.12 22.47 0.20 -1.44 16 19 C -0.16 -2.86 10.11 22.36 0.23 -2.63 16 20 C 0.08 1.68 11.18 84.69 0.95 2.62 16 21 N -0.51 -13.54 10.36 -195.85 -2.03 -15.56 16 22 C 0.09 2.52 10.34 84.67 0.88 3.39 16 23 H 0.06 1.30 7.14 -2.39 -0.02 1.28 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.06 2.07 7.74 -2.38 -0.02 2.05 16 28 H 0.41 14.13 7.15 -96.75 -0.69 13.44 16 29 H 0.30 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.15 3.98 6.84 -2.91 -0.02 3.96 16 Total: -1.00 -76.81 299.19 -0.78 -77.60 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.43 Total: 28.71 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 4.25 Total: -53.00 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -2.68 Total: -112.82 kcal Atomic # 8 Polarization: -122.95 SS G_CDS: -4.53 Total: -127.48 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 144.54 SS G_CDS: -0.28 Total: 144.26 kcal Total: -76.81 -0.78 -77.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994023.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.006 kcal (2) G-P(sol) polarization free energy of solvation -76.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds