Wall clock time and date at job start Mon Mar 30 2020 01:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38675 * 120.78958 * 2 1 4 4 C 1.38184 * 119.16617 * 180.02562 * 3 2 1 5 5 N 1.31882 * 120.76302 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72456 * 359.68124 * 5 4 3 7 7 C 1.50704 * 119.61576 * 180.29006 * 6 5 4 8 8 C 1.52996 * 109.47013 * 305.28592 * 7 6 5 9 9 N 1.46502 * 109.46967 * 179.97438 * 8 7 6 10 10 S 1.65600 * 119.99941 * 165.00200 * 9 8 7 11 11 O 1.42105 * 106.40421 * 178.54573 * 10 9 8 12 12 O 1.42107 * 106.40230 * 311.46247 * 10 9 8 13 13 C 1.76198 * 107.21812 * 65.00237 * 10 9 8 14 14 H 1.07993 * 119.99938 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99711 * 180.02562 * 13 10 9 16 16 N 1.31520 * 119.99873 * 180.02562 * 15 13 10 17 17 Si 1.86806 * 120.00388 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47101 * 90.00106 * 17 15 13 19 19 H 1.48497 * 109.47205 * 210.00050 * 17 15 13 20 20 H 1.48496 * 109.46890 * 329.99931 * 17 15 13 21 21 C 1.38221 * 120.76518 * 0.58353 * 6 5 4 22 22 H 1.08994 * 109.46978 * 269.97551 * 1 2 3 23 23 H 1.08997 * 109.47043 * 29.97551 * 1 2 3 24 24 H 1.09004 * 109.46676 * 149.97906 * 1 2 3 25 25 H 1.08006 * 120.41367 * 0.04222 * 3 2 1 26 26 H 1.07993 * 119.61608 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.47103 * 65.28898 * 7 6 5 28 28 H 1.09005 * 109.46670 * 185.28714 * 7 6 5 29 29 H 1.09000 * 109.47436 * 300.00102 * 8 7 6 30 30 H 1.09005 * 109.47303 * 60.00510 * 8 7 6 31 31 H 0.96997 * 120.00110 * 345.01128 * 9 8 7 32 32 H 0.96997 * 120.00007 * 180.02562 * 16 15 13 33 33 H 1.08002 * 120.42313 * 179.73507 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5983 -1.1515 0.0041 7 6 4.3801 -2.4399 0.0093 8 6 5.3561 -2.4489 -1.1689 9 7 6.1165 -3.7011 -1.1635 10 16 6.9702 -4.1572 -2.5072 11 8 7.6160 -5.3791 -2.1768 12 8 6.0855 -4.0194 -3.6107 13 6 8.2479 -2.9668 -2.7423 14 1 8.3445 -2.1363 -2.0587 15 6 9.1235 -3.0951 -3.7995 16 7 10.0775 -2.2068 -3.9747 17 14 8.9550 -4.5304 -4.9832 18 1 8.0531 -4.1483 -6.0993 19 1 10.2913 -4.8843 -5.5255 20 1 8.3866 -5.6996 -4.2655 21 6 2.2167 -1.1909 -0.0006 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6966 2.1378 0.0007 26 1 4.1582 2.0755 -0.0010 27 1 4.9366 -2.5235 0.9428 28 1 3.6936 -3.2818 -0.0811 29 1 4.7996 -2.3654 -2.1024 30 1 6.0426 -1.6071 -1.0786 31 1 6.1198 -4.2631 -0.3730 32 1 10.6933 -2.2969 -4.7187 33 1 1.6965 -2.1374 -0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994138.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:19 Heat of formation + Delta-G solvation = -58.103486 kcal Electronic energy + Delta-G solvation = -18053.351966 eV Core-core repulsion = 15012.478022 eV Total energy + Delta-G solvation = -3040.873943 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35930 -35.84927 -35.41737 -34.36868 -33.95673 -32.96805 -32.16528 -28.32563 -27.98215 -26.34161 -23.41948 -23.06754 -20.69392 -19.01177 -17.46118 -16.72548 -16.62151 -16.20127 -15.55898 -15.39908 -14.82698 -14.65161 -14.09203 -13.67399 -13.40171 -13.26036 -12.99870 -12.80138 -12.76194 -12.70224 -11.89323 -11.60137 -11.43021 -11.32153 -11.15463 -10.70321 -10.56173 -10.43946 -9.80827 -9.57399 -9.43869 -9.15391 -9.14507 -8.99891 -8.48127 -6.74019 -5.27118 1.05166 1.18452 2.15219 3.11559 3.22442 3.31424 3.71479 4.00485 4.20799 4.38641 4.53770 4.62125 4.65932 4.95376 5.02945 5.17519 5.24613 5.29836 5.34732 5.38961 5.46931 5.62455 5.70834 5.83603 5.96545 6.11237 6.18526 6.28873 6.41037 6.66720 6.68323 7.54130 7.80410 8.01231 8.29493 8.77289 10.38531 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032493 B = 0.004455 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.515348 B = 6283.815717 C = 6620.215320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 C -0.185 4.185 4 C 0.108 3.892 5 N -0.479 5.479 6 C 0.142 3.858 7 C -0.078 4.078 8 C 0.134 3.866 9 N -1.126 6.126 10 S 2.677 3.323 11 O -1.010 7.010 12 O -1.013 7.013 13 C -1.015 5.015 14 H 0.122 0.878 15 C 0.153 3.847 16 N -0.824 5.824 17 Si 0.803 3.197 18 H -0.247 1.247 19 H -0.256 1.256 20 H -0.220 1.220 21 C -0.172 4.172 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.132 0.868 26 H 0.156 0.844 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.405 0.595 32 H 0.280 0.720 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 5.098 9.120 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.205 4.205 4 C -0.049 4.049 5 N -0.189 5.189 6 C 0.004 3.996 7 C -0.117 4.117 8 C 0.007 3.993 9 N -0.882 5.882 10 S 2.779 3.221 11 O -1.000 7.000 12 O -1.003 7.003 13 C -1.149 5.149 14 H 0.140 0.860 15 C -0.067 4.067 16 N -0.453 5.453 17 Si 0.623 3.377 18 H -0.171 1.171 19 H -0.180 1.180 20 H -0.142 1.142 21 C -0.192 4.192 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.150 0.850 26 H 0.173 0.827 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.868 4.527 8.332 18.486 hybrid contribution -0.429 0.052 -0.059 0.436 sum -16.297 4.579 8.273 18.841 Atomic orbital electron populations 1.20819 0.90377 1.03340 1.02697 1.20318 0.96660 0.93056 0.95137 1.22016 0.95763 0.98515 1.04199 1.22780 0.91664 0.96192 0.94253 1.67532 1.41216 0.98020 1.12133 1.21182 0.90934 0.93792 0.93692 1.20790 0.98035 0.92412 1.00492 1.21001 0.93705 0.86726 0.97851 1.55467 1.66805 1.32446 1.33486 1.01260 0.74568 0.74750 0.71551 1.93472 1.76031 1.46788 1.83701 1.93399 1.67437 1.88092 1.51370 1.30479 1.31966 1.29605 1.22897 0.85976 1.24438 0.92208 0.94951 0.95054 1.70000 1.13887 1.32936 1.28523 0.87851 0.81182 0.84285 0.84411 1.17068 1.17970 1.14212 1.21891 0.94733 0.98817 1.03729 0.90664 0.91091 0.90979 0.85050 0.82666 0.89232 0.89721 0.90857 0.90578 0.76390 0.90985 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.06 36.01 0.36 -0.41 16 2 C -0.04 -0.43 5.92 -104.32 -0.62 -1.05 16 3 C -0.19 -1.82 9.82 -39.44 -0.39 -2.21 16 4 C 0.11 1.27 11.18 -17.55 -0.20 1.08 16 5 N -0.48 -7.03 9.87 -9.47 -0.09 -7.12 16 6 C 0.14 1.92 6.18 -82.58 -0.51 1.41 16 7 C -0.08 -1.04 5.76 -27.88 -0.16 -1.20 16 8 C 0.13 2.37 6.08 -4.04 -0.02 2.35 16 9 N -1.13 -21.76 6.00 -10.61 -0.06 -21.82 16 10 S 2.68 68.02 4.24 -107.50 -0.46 67.56 16 11 O -1.01 -27.38 16.03 -57.17 -0.92 -28.29 16 12 O -1.01 -27.56 16.30 -57.17 -0.93 -28.49 16 13 C -1.02 -29.09 10.26 30.60 0.31 -28.77 16 14 H 0.12 3.55 8.06 -52.49 -0.42 3.13 16 15 C 0.15 4.49 5.47 -17.82 -0.10 4.39 16 16 N -0.82 -24.36 13.96 55.43 0.77 -23.59 16 17 Si 0.80 21.01 26.54 -169.99 -4.51 16.50 16 18 H -0.25 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.22 -5.84 5.61 56.52 0.32 -5.52 16 21 C -0.17 -1.92 9.42 -39.44 -0.37 -2.29 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 24 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 25 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 26 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 0.94 7.87 -51.93 -0.41 0.53 16 29 H 0.07 1.36 7.75 -51.93 -0.40 0.96 16 30 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 31 H 0.40 6.49 8.65 -34.47 -0.30 6.19 16 32 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.13 1.20 7.95 -52.49 -0.42 0.78 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -35.18 298.03 -7.51 -42.69 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.11 Total: 4.77 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -1.69 Total: -26.70 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.62 Total: -52.53 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -1.85 Total: -56.79 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.51 Total: 16.50 kcal Atomic # 16 Polarization: 68.02 SS G_CDS: -0.46 Total: 67.56 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.18 -7.51 -42.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994138.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.416 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds