Wall clock time and date at job start Mon Mar 30 2020 01:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46869 * 2 1 4 4 H 1.08994 * 109.47071 * 305.41666 * 3 2 1 5 5 N 1.46503 * 109.46950 * 65.41758 * 3 2 1 6 6 S 1.65595 * 119.99924 * 216.11531 * 5 3 2 7 7 O 1.42095 * 106.40382 * 179.09092 * 6 5 3 8 8 O 1.42100 * 106.40104 * 312.01060 * 6 5 3 9 9 C 1.76200 * 107.21869 * 65.54906 * 6 5 3 10 10 H 1.08002 * 120.00203 * 4.75378 * 9 6 5 11 11 C 1.37872 * 120.00129 * 184.75796 * 9 6 5 12 12 N 1.31522 * 120.00174 * 180.02562 * 11 9 6 13 13 Si 1.86801 * 120.00091 * 359.97438 * 11 9 6 14 14 H 1.48501 * 109.47117 * 90.00421 * 13 11 9 15 15 H 1.48499 * 109.47401 * 210.00467 * 13 11 9 16 16 H 1.48502 * 109.46807 * 330.00294 * 13 11 9 17 17 C 1.50699 * 109.46863 * 185.41472 * 3 2 1 18 18 C 1.38657 * 120.78895 * 279.97832 * 17 3 2 19 19 C 1.38201 * 119.16011 * 180.02562 * 18 17 3 20 20 N 1.31876 * 120.76875 * 359.97438 * 19 18 17 21 21 C 1.31869 * 121.72027 * 359.97438 * 20 19 18 22 22 C 1.38201 * 120.76794 * 0.02860 * 21 20 19 23 23 H 1.09000 * 109.46633 * 184.83447 * 1 2 3 24 24 H 1.08995 * 109.47118 * 304.83227 * 1 2 3 25 25 H 1.08998 * 109.46904 * 64.83614 * 1 2 3 26 26 H 1.09004 * 109.47074 * 240.00830 * 2 1 3 27 27 H 1.09003 * 109.47327 * 120.00382 * 2 1 3 28 28 H 0.97000 * 119.99753 * 36.11095 * 5 3 2 29 29 H 0.96998 * 119.99620 * 179.97438 * 12 11 9 30 30 H 1.07993 * 120.42068 * 0.03991 * 18 17 3 31 31 H 1.08001 * 119.61558 * 180.25449 * 19 18 17 32 32 H 1.08002 * 119.61202 * 179.97438 * 21 20 19 33 33 H 1.08004 * 120.41977 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5996 1.9836 -0.8375 5 7 1.6610 2.0945 1.2561 6 16 1.2376 3.6954 1.2631 7 8 0.9084 4.0174 2.6074 8 8 2.2400 4.3788 0.5234 9 6 -0.2535 3.8446 0.3363 10 1 -0.7467 2.9602 -0.0393 11 6 -0.7906 5.0904 0.0904 12 7 -1.9038 5.2018 -0.6011 13 14 0.0621 6.6200 0.7404 14 1 1.0325 7.1130 -0.2699 15 1 -0.9491 7.6734 1.0107 16 1 0.7808 6.2897 1.9972 17 6 3.5410 1.4447 -0.1341 18 6 4.3520 1.2025 0.9642 19 6 5.7246 1.2130 0.8031 20 7 6.2635 1.4490 -0.3771 21 6 5.5233 1.6823 -1.4432 22 6 4.1439 1.6879 -1.3587 23 1 -0.3632 -1.0240 0.0866 24 1 -0.3633 0.5870 0.8435 25 1 -0.3633 0.4370 -0.9301 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 1.6580 1.5883 2.0835 29 1 -2.2818 6.0782 -0.7737 30 1 3.9167 1.0079 1.9331 31 1 6.3632 1.0212 1.6527 32 1 6.0007 1.8721 -2.3933 33 1 3.5430 1.8792 -2.2356 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:05 Heat of formation + Delta-G solvation = -55.668183 kcal Electronic energy + Delta-G solvation = -19130.703655 eV Core-core repulsion = 16089.935314 eV Total energy + Delta-G solvation = -3040.768341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06132 -36.81624 -35.61350 -34.46551 -33.08784 -31.85569 -31.37400 -30.90521 -26.46002 -26.10265 -23.30899 -22.52630 -20.79020 -19.23941 -17.63603 -16.93547 -16.66626 -16.12166 -15.44854 -15.31814 -14.96380 -14.12926 -13.80702 -13.70677 -13.53475 -13.45128 -13.30191 -12.88141 -12.43747 -11.66986 -11.59665 -11.43214 -11.40718 -11.12448 -10.77669 -10.70797 -10.64118 -10.52341 -9.97442 -9.58886 -9.30726 -9.26607 -9.19594 -8.95773 -8.72394 -6.85202 -5.39650 1.33416 1.42788 2.02815 3.05022 3.14649 3.22953 3.91264 3.96846 4.27374 4.54613 4.61199 4.68651 4.93951 5.09212 5.24318 5.30899 5.33843 5.37087 5.50364 5.75733 5.79871 5.90647 5.93145 6.02826 6.11165 6.19183 6.25053 6.33455 6.57350 6.71976 6.88255 7.42957 7.62110 8.12569 8.15637 8.65928 10.26695 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.007518 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.307813 B = 3723.410303 C = 4193.316778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.196 3.804 4 H 0.107 0.893 5 N -1.114 6.114 6 S 2.671 3.329 7 O -1.009 7.009 8 O -1.007 7.007 9 C -1.016 5.016 10 H 0.124 0.876 11 C 0.154 3.846 12 N -0.821 5.821 13 Si 0.812 3.188 14 H -0.245 1.245 15 H -0.258 1.258 16 H -0.232 1.232 17 C -0.040 4.040 18 C -0.158 4.158 19 C 0.091 3.909 20 N -0.493 5.493 21 C 0.095 3.905 22 C -0.158 4.158 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.405 0.595 29 H 0.281 0.719 30 H 0.131 0.869 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.707 -10.060 -0.561 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C 0.088 3.912 4 H 0.124 0.876 5 N -0.868 5.868 6 S 2.773 3.227 7 O -0.999 6.999 8 O -0.996 6.996 9 C -1.150 5.150 10 H 0.142 0.858 11 C -0.066 4.066 12 N -0.450 5.450 13 Si 0.633 3.367 14 H -0.169 1.169 15 H -0.182 1.182 16 H -0.155 1.155 17 C -0.051 4.051 18 C -0.178 4.178 19 C -0.065 4.065 20 N -0.203 5.203 21 C -0.062 4.062 22 C -0.178 4.178 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.237 0.763 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.955 -9.173 -0.458 12.827 hybrid contribution -1.303 0.378 0.259 1.381 sum 7.651 -8.795 -0.199 11.659 Atomic orbital electron populations 1.21812 0.94500 1.01407 1.03610 1.21775 0.97111 0.94439 1.02467 1.19627 0.88503 0.95226 0.87885 0.87559 1.55667 1.85524 1.31831 1.13788 1.01519 0.76236 0.70436 0.74500 1.93469 1.86081 1.81430 1.38897 1.93414 1.61592 1.70998 1.73645 1.30459 1.29669 1.02076 1.52816 0.85767 1.24413 0.93135 0.98467 0.90587 1.69985 1.16903 1.26218 1.31926 0.87695 0.81557 0.84503 0.82915 1.16895 1.18189 1.15480 1.20857 0.97103 0.93726 0.93364 1.21915 0.94713 1.01580 0.99632 1.22658 0.92796 0.96016 0.95057 1.67616 1.41107 1.12024 0.99534 1.22664 0.90723 0.95669 0.97132 1.22045 0.96368 1.00961 0.98443 0.92926 0.91403 0.92019 0.91008 0.91488 0.76270 0.90871 0.85098 0.83130 0.82946 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.86 37.16 0.37 -1.67 16 2 C -0.12 -1.45 5.52 -26.73 -0.15 -1.60 16 3 C 0.20 3.06 2.40 -69.08 -0.17 2.89 16 4 H 0.11 1.79 7.79 -51.93 -0.40 1.39 16 5 N -1.11 -19.73 4.22 -5.88 -0.02 -19.76 16 6 S 2.67 64.41 4.12 -107.50 -0.44 63.97 16 7 O -1.01 -26.65 16.54 -57.17 -0.95 -27.60 16 8 O -1.01 -26.28 16.16 -57.17 -0.92 -27.21 16 9 C -1.02 -27.09 10.18 30.60 0.31 -26.78 16 10 H 0.12 3.27 8.06 -52.49 -0.42 2.84 16 11 C 0.15 4.30 5.47 -17.82 -0.10 4.21 16 12 N -0.82 -23.07 13.96 55.43 0.77 -22.30 16 13 Si 0.81 20.76 26.34 -169.99 -4.48 16.28 16 14 H -0.25 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.26 -6.05 7.11 56.52 0.40 -5.64 16 16 H -0.23 -6.10 5.87 56.52 0.33 -5.76 16 17 C -0.04 -0.62 4.98 -104.32 -0.52 -1.14 16 18 C -0.16 -2.25 9.43 -39.44 -0.37 -2.62 16 19 C 0.09 1.26 11.18 -17.55 -0.20 1.07 16 20 N -0.49 -7.43 10.36 -13.25 -0.14 -7.57 16 21 C 0.09 1.32 11.18 -17.55 -0.20 1.12 16 22 C -0.16 -2.28 9.78 -39.44 -0.39 -2.66 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.99 7.64 -51.93 -0.40 0.60 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.41 5.99 8.69 -34.47 -0.30 5.69 16 29 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.13 1.60 7.67 -52.49 -0.40 1.19 16 31 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.14 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 296.64 15.07 4.47 4.47 Total: -1.00 -33.37 296.64 -7.20 -40.57 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.09 Total: 6.32 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -1.40 Total: -27.19 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.61 Total: -49.63 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -1.87 Total: -54.81 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.48 Total: 16.28 kcal Atomic # 16 Polarization: 64.41 SS G_CDS: -0.44 Total: 63.97 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.37 -7.20 -40.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.097 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds