Wall clock time and date at job start Mon Mar 30 2020 01:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46869 * 2 1 4 4 H 1.08994 * 109.47071 * 305.41666 * 3 2 1 5 5 N 1.46503 * 109.46950 * 65.41758 * 3 2 1 6 6 S 1.65595 * 119.99924 * 216.11531 * 5 3 2 7 7 O 1.42095 * 106.40382 * 179.09092 * 6 5 3 8 8 O 1.42100 * 106.40104 * 312.01060 * 6 5 3 9 9 C 1.76200 * 107.21869 * 65.54906 * 6 5 3 10 10 H 1.08002 * 120.00203 * 4.75378 * 9 6 5 11 11 C 1.37872 * 120.00129 * 184.75796 * 9 6 5 12 12 N 1.31522 * 120.00174 * 180.02562 * 11 9 6 13 13 Si 1.86801 * 120.00091 * 359.97438 * 11 9 6 14 14 H 1.48501 * 109.47117 * 90.00421 * 13 11 9 15 15 H 1.48499 * 109.47401 * 210.00467 * 13 11 9 16 16 H 1.48502 * 109.46807 * 330.00294 * 13 11 9 17 17 C 1.50699 * 109.46863 * 185.41472 * 3 2 1 18 18 C 1.38657 * 120.78895 * 279.97832 * 17 3 2 19 19 C 1.38201 * 119.16011 * 180.02562 * 18 17 3 20 20 N 1.31876 * 120.76875 * 359.97438 * 19 18 17 21 21 C 1.31869 * 121.72027 * 359.97438 * 20 19 18 22 22 C 1.38201 * 120.76794 * 0.02860 * 21 20 19 23 23 H 1.09000 * 109.46633 * 184.83447 * 1 2 3 24 24 H 1.08995 * 109.47118 * 304.83227 * 1 2 3 25 25 H 1.08998 * 109.46904 * 64.83614 * 1 2 3 26 26 H 1.09004 * 109.47074 * 240.00830 * 2 1 3 27 27 H 1.09003 * 109.47327 * 120.00382 * 2 1 3 28 28 H 0.97000 * 119.99753 * 36.11095 * 5 3 2 29 29 H 0.96998 * 119.99620 * 179.97438 * 12 11 9 30 30 H 1.07993 * 120.42068 * 0.03991 * 18 17 3 31 31 H 1.08001 * 119.61558 * 180.25449 * 19 18 17 32 32 H 1.08002 * 119.61202 * 179.97438 * 21 20 19 33 33 H 1.08004 * 120.41977 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5996 1.9836 -0.8375 5 7 1.6610 2.0945 1.2561 6 16 1.2376 3.6954 1.2631 7 8 0.9084 4.0174 2.6074 8 8 2.2400 4.3788 0.5234 9 6 -0.2535 3.8446 0.3363 10 1 -0.7467 2.9602 -0.0393 11 6 -0.7906 5.0904 0.0904 12 7 -1.9038 5.2018 -0.6011 13 14 0.0621 6.6200 0.7404 14 1 1.0325 7.1130 -0.2699 15 1 -0.9491 7.6734 1.0107 16 1 0.7808 6.2897 1.9972 17 6 3.5410 1.4447 -0.1341 18 6 4.3520 1.2025 0.9642 19 6 5.7246 1.2130 0.8031 20 7 6.2635 1.4490 -0.3771 21 6 5.5233 1.6823 -1.4432 22 6 4.1439 1.6879 -1.3587 23 1 -0.3632 -1.0240 0.0866 24 1 -0.3633 0.5870 0.8435 25 1 -0.3633 0.4370 -0.9301 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 1.6580 1.5883 2.0835 29 1 -2.2818 6.0782 -0.7737 30 1 3.9167 1.0079 1.9331 31 1 6.3632 1.0212 1.6527 32 1 6.0007 1.8721 -2.3933 33 1 3.5430 1.8792 -2.2356 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:04 Heat of formation + Delta-G solvation = -81.101171 kcal Electronic energy + Delta-G solvation = -19131.806512 eV Core-core repulsion = 16089.935314 eV Total energy + Delta-G solvation = -3041.871198 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14568 -38.09482 -37.57875 -36.49219 -35.19079 -32.96591 -32.63065 -31.99457 -28.54977 -27.29369 -24.37467 -23.57817 -21.97276 -21.13235 -19.52035 -18.65367 -18.05249 -17.38658 -17.10933 -16.53199 -16.38857 -15.72379 -15.41953 -15.16381 -14.95070 -14.71654 -14.66231 -14.44396 -13.68641 -13.46924 -13.31798 -13.00217 -12.70684 -12.69241 -12.57412 -12.46290 -12.09220 -11.92524 -11.71718 -11.36056 -11.24752 -10.67729 -10.40344 -10.22359 -10.00349 -8.96723 -7.51056 0.09173 0.28162 0.37452 1.03559 1.11620 1.18072 1.86608 2.42069 2.54509 2.93954 3.30419 3.54873 3.66350 3.86923 4.04068 4.17577 4.21066 4.30516 4.33674 4.41279 4.65034 4.76617 4.78522 4.94173 4.97483 5.10143 5.13883 5.24855 5.38212 5.51416 5.55822 5.84261 6.05202 6.28144 6.55002 7.06851 8.20280 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.007518 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.307813 B = 3723.410303 C = 4193.316778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C 0.191 3.809 4 H 0.088 0.912 5 N -1.098 6.098 6 S 2.693 3.307 7 O -1.034 7.034 8 O -1.027 7.027 9 C -1.031 5.031 10 H 0.117 0.883 11 C 0.113 3.887 12 N -0.849 5.849 13 Si 0.829 3.171 14 H -0.241 1.241 15 H -0.224 1.224 16 H -0.244 1.244 17 C -0.058 4.058 18 C -0.167 4.167 19 C 0.086 3.914 20 N -0.513 5.513 21 C 0.089 3.911 22 C -0.172 4.172 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.421 0.579 29 H 0.291 0.709 30 H 0.149 0.851 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 -10.995 -0.284 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.148 4.148 3 C 0.083 3.917 4 H 0.106 0.894 5 N -0.857 5.857 6 S 2.793 3.207 7 O -1.024 7.024 8 O -1.017 7.017 9 C -1.164 5.164 10 H 0.135 0.865 11 C -0.104 4.104 12 N -0.479 5.479 13 Si 0.648 3.352 14 H -0.164 1.164 15 H -0.146 1.146 16 H -0.168 1.168 17 C -0.068 4.068 18 C -0.187 4.187 19 C -0.071 4.071 20 N -0.222 5.222 21 C -0.067 4.067 22 C -0.192 4.192 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.257 0.743 29 H 0.101 0.899 30 H 0.167 0.833 31 H 0.196 0.804 32 H 0.196 0.804 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.945 -10.100 -0.185 14.175 hybrid contribution -1.589 0.564 0.146 1.692 sum 8.356 -9.536 -0.039 12.679 Atomic orbital electron populations 1.21833 0.95319 1.02462 1.01968 1.21757 0.96191 0.92309 1.04542 1.19821 0.89198 0.96748 0.85890 0.89419 1.55092 1.84960 1.29947 1.15691 1.00645 0.75013 0.71823 0.73175 1.93425 1.86313 1.82969 1.39675 1.93383 1.61498 1.72756 1.74045 1.30931 1.31037 1.01760 1.52715 0.86521 1.25043 0.93768 1.00526 0.91051 1.70001 1.17656 1.27418 1.32852 0.87427 0.81966 0.83739 0.82064 1.16430 1.14635 1.16782 1.20918 0.96706 0.94857 0.94321 1.22169 0.94986 1.01440 1.00091 1.23154 0.93174 0.95132 0.95593 1.67682 1.41693 1.12630 1.00227 1.23111 0.90657 0.94895 0.98020 1.22298 0.96983 1.01086 0.98822 0.90441 0.93378 0.93460 0.88906 0.89330 0.74277 0.89893 0.83336 0.80387 0.80396 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.86 71.98 0.71 -3.23 16 2 C -0.11 -2.41 5.52 30.60 0.17 -2.24 16 3 C 0.19 5.72 2.40 44.25 0.11 5.83 16 4 H 0.09 2.95 7.79 -2.39 -0.02 2.94 16 5 N -1.10 -37.68 4.22 -172.51 -0.73 -38.41 16 6 S 2.69 129.04 4.12 -56.49 -0.23 128.80 16 7 O -1.03 -54.24 16.54 -128.00 -2.12 -56.36 16 8 O -1.03 -53.28 16.16 -128.00 -2.07 -55.34 16 9 C -1.03 -55.53 10.18 67.73 0.69 -54.84 16 10 H 0.12 6.27 8.06 -2.91 -0.02 6.25 16 11 C 0.11 6.36 5.47 84.65 0.46 6.82 16 12 N -0.85 -47.86 13.96 21.45 0.30 -47.56 16 13 Si 0.83 41.45 26.34 68.60 1.81 43.26 16 14 H -0.24 -11.77 7.11 99.48 0.71 -11.06 16 15 H -0.22 -9.90 7.11 99.48 0.71 -9.19 16 16 H -0.24 -12.70 5.87 99.48 0.58 -12.11 16 17 C -0.06 -1.68 4.98 -19.67 -0.10 -1.78 16 18 C -0.17 -4.37 9.43 22.36 0.21 -4.16 16 19 C 0.09 2.17 11.18 84.68 0.95 3.12 16 20 N -0.51 -14.45 10.36 -195.84 -2.03 -16.48 16 21 C 0.09 2.33 11.18 84.68 0.95 3.27 16 22 C -0.17 -4.71 9.78 22.36 0.22 -4.49 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 1.37 7.64 -2.39 -0.02 1.35 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.42 11.72 8.69 -96.75 -0.84 10.88 16 29 H 0.29 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.15 3.22 7.67 -2.91 -0.02 3.19 16 31 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -70.59 296.64 -0.55 -71.14 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.16 Total: 22.64 kcal Atomic # 6 Polarization: -56.07 SS G_CDS: 4.36 Total: -51.70 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -2.46 Total: -102.44 kcal Atomic # 8 Polarization: -107.52 SS G_CDS: -4.18 Total: -111.70 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.81 Total: 43.26 kcal Atomic # 16 Polarization: 129.04 SS G_CDS: -0.23 Total: 128.80 kcal Total: -70.59 -0.55 -71.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.959 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds