Wall clock time and date at job start Mon Mar 30 2020 00:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00217 * 2 1 4 4 H 1.48504 * 109.47094 * 269.99882 * 3 2 1 5 5 H 1.48495 * 109.47068 * 29.99739 * 3 2 1 6 6 H 1.48503 * 109.47152 * 150.00167 * 3 2 1 7 7 C 1.37879 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99584 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00541 * 180.02562 * 7 2 1 10 10 O 1.42108 * 106.39990 * 66.45496 * 9 7 2 11 11 O 1.42098 * 106.39661 * 293.54006 * 9 7 2 12 12 N 1.65591 * 107.22142 * 179.97438 * 9 7 2 13 13 C 1.46501 * 119.99892 * 64.99669 * 12 9 7 14 14 C 1.53000 * 109.47357 * 165.00135 * 13 12 9 15 15 C 1.53001 * 109.47525 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47293 * 180.02562 * 15 14 13 17 17 C 1.38678 * 120.41675 * 270.25216 * 16 15 14 18 18 C 1.38627 * 118.41930 * 180.24221 * 17 16 15 19 19 C 1.38232 * 119.16085 * 359.75178 * 18 17 16 20 20 N 1.31857 * 120.76541 * 359.97438 * 19 18 17 21 21 C 1.31889 * 121.72235 * 0.02562 * 20 19 18 22 22 H 0.97003 * 119.99694 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00135 * 245.00352 * 12 9 7 24 24 H 1.08999 * 109.47162 * 45.00348 * 13 12 9 25 25 H 1.09000 * 109.47550 * 285.00298 * 13 12 9 26 26 H 1.08999 * 109.46811 * 59.99998 * 14 13 12 27 27 H 1.09009 * 109.47047 * 300.00304 * 14 13 12 28 28 H 1.09001 * 109.46704 * 59.99857 * 15 14 13 29 29 H 1.08996 * 109.46675 * 299.99839 * 15 14 13 30 30 H 1.07994 * 120.78944 * 359.96926 * 17 16 15 31 31 H 1.07997 * 120.42083 * 179.72800 * 18 17 16 32 32 H 1.07999 * 119.61954 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.61237 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 16 3.7666 -1.1942 0.0001 10 8 4.1673 -0.6505 1.2504 11 8 4.1682 -0.6489 -1.2491 12 7 4.2567 -2.7759 0.0000 13 6 3.9617 -3.6340 -1.1502 14 6 4.8204 -4.8982 -1.0769 15 6 4.5128 -5.7942 -2.2784 16 6 5.3582 -7.0396 -2.2058 17 6 6.6132 -7.0716 -2.7949 18 6 7.3534 -8.2404 -2.7074 19 6 6.8220 -9.3256 -2.0362 20 7 5.6269 -9.2574 -1.4831 21 6 4.8949 -8.1621 -1.5465 22 1 -0.4850 0.8401 0.0004 23 1 4.7390 -3.1343 0.7614 24 1 4.1850 -3.0962 -2.0715 25 1 2.9073 -3.9098 -1.1369 26 1 4.5972 -5.4361 -0.1555 27 1 5.8750 -4.6224 -1.0902 28 1 4.7364 -5.2560 -3.1995 29 1 3.4584 -6.0699 -2.2654 30 1 7.0027 -6.2080 -3.3134 31 1 8.3328 -8.3025 -3.1583 32 1 7.3924 -10.2398 -1.9632 33 1 3.9203 -8.1440 -1.0816 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995441.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:49 Heat of formation + Delta-G solvation = -60.855473 kcal Electronic energy + Delta-G solvation = -17797.664960 eV Core-core repulsion = 14756.671682 eV Total energy + Delta-G solvation = -3040.993279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.35917 -36.35691 -35.56406 -34.42267 -33.72378 -33.02438 -32.18187 -29.95174 -26.41869 -25.68423 -23.75040 -22.46592 -21.25736 -19.03827 -17.50180 -17.27091 -16.64923 -16.57618 -15.90554 -15.17239 -14.99535 -14.77013 -14.16650 -13.85393 -13.48526 -13.28538 -13.23273 -12.92768 -12.69935 -12.46661 -11.93920 -11.58137 -11.37868 -11.08028 -10.89219 -10.72043 -10.61443 -10.49131 -9.98812 -9.83685 -9.61550 -9.23146 -9.21190 -9.11755 -8.56486 -6.80485 -5.34296 0.90353 1.08032 2.09232 3.07611 3.17940 3.27285 3.60578 3.95492 4.23247 4.33964 4.56571 4.60312 4.60453 4.79142 4.81582 5.05773 5.15465 5.21737 5.35359 5.41268 5.56285 5.67351 5.70431 5.89882 5.93647 6.04906 6.13704 6.23524 6.31810 6.50293 6.63217 7.47529 7.73860 7.77537 8.20408 8.70733 10.31861 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045084 B = 0.003678 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.918881 B = 7610.515585 C = 7834.803905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.152 3.848 3 Si 0.803 3.197 4 H -0.246 1.246 5 H -0.256 1.256 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.121 0.879 9 S 2.677 3.323 10 O -1.010 7.010 11 O -1.013 7.013 12 N -1.126 6.126 13 C 0.124 3.876 14 C -0.121 4.121 15 C -0.080 4.080 16 C -0.125 4.125 17 C -0.075 4.075 18 C -0.172 4.172 19 C 0.087 3.913 20 N -0.485 5.485 21 C 0.100 3.900 22 H 0.280 0.720 23 H 0.405 0.595 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.719 -14.305 -5.351 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.623 3.377 4 H -0.170 1.170 5 H -0.180 1.180 6 H -0.142 1.142 7 C -1.150 5.150 8 H 0.139 0.861 9 S 2.778 3.222 10 O -1.000 7.000 11 O -1.003 7.003 12 N -0.882 5.882 13 C -0.003 4.003 14 C -0.160 4.160 15 C -0.118 4.118 16 C -0.127 4.127 17 C -0.101 4.101 18 C -0.192 4.192 19 C -0.070 4.070 20 N -0.193 5.193 21 C -0.057 4.057 22 H 0.091 0.909 23 H 0.236 0.764 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.170 0.830 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.704 -14.147 -5.082 18.454 hybrid contribution 0.087 0.969 -0.126 0.981 sum 10.790 -13.179 -5.208 17.811 Atomic orbital electron populations 1.69991 1.06610 1.29038 1.39676 1.24437 0.94790 0.98852 0.88602 0.87842 0.83576 0.84483 0.81794 1.17029 1.17961 1.14212 1.30470 1.15729 1.02138 1.66706 0.86113 1.01282 0.77264 0.70419 0.73213 1.93475 1.85516 1.75980 1.45018 1.93398 1.85046 1.76128 1.45678 1.55468 1.74344 1.31575 1.26814 1.21125 0.99091 0.90880 0.89163 1.21793 1.00709 0.95384 0.98073 1.20559 0.99379 0.92301 0.99589 1.20986 0.95954 0.97286 0.98516 1.21575 0.93466 0.98079 0.96964 1.22150 1.01366 0.94429 1.01215 1.22740 0.92032 0.98345 0.93904 1.67693 1.06419 1.27293 1.17922 1.22757 0.99413 0.87959 0.95598 0.90916 0.76377 0.90547 0.91676 0.91162 0.91287 0.90075 0.89872 0.84714 0.84914 0.83022 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.71 13.96 55.43 0.77 -22.93 16 2 C 0.15 4.36 5.47 -17.82 -0.10 4.27 16 3 Si 0.80 20.53 26.54 -169.99 -4.51 16.02 16 4 H -0.25 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.22 -5.73 5.61 56.52 0.32 -5.41 16 7 C -1.02 -28.01 10.26 30.60 0.31 -27.70 16 8 H 0.12 3.34 8.06 -52.49 -0.42 2.92 16 9 S 2.68 65.56 4.24 -107.50 -0.46 65.11 16 10 O -1.01 -26.85 16.02 -57.17 -0.92 -27.77 16 11 O -1.01 -26.52 16.30 -57.17 -0.93 -27.45 16 12 N -1.13 -20.60 6.00 -10.61 -0.06 -20.66 16 13 C 0.12 1.90 6.22 -4.04 -0.03 1.88 16 14 C -0.12 -1.37 5.34 -26.73 -0.14 -1.51 16 15 C -0.08 -0.76 5.37 -27.88 -0.15 -0.91 16 16 C -0.13 -1.23 5.15 -104.48 -0.54 -1.76 16 17 C -0.07 -0.67 9.86 -39.28 -0.39 -1.05 16 18 C -0.17 -1.40 10.11 -39.44 -0.40 -1.80 16 19 C 0.09 0.80 11.18 -17.54 -0.20 0.60 16 20 N -0.49 -5.53 10.36 -13.25 -0.14 -5.67 16 21 C 0.10 1.05 10.86 -17.55 -0.19 0.85 16 22 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.40 6.32 8.65 -34.46 -0.30 6.03 16 24 H 0.08 1.20 7.75 -51.93 -0.40 0.80 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 298.69 15.07 4.50 4.50 Total: -1.00 -34.09 298.69 -7.70 -41.79 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.14 Total: 4.20 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -1.81 Total: -27.14 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.57 Total: -49.26 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -1.85 Total: -55.22 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.51 Total: 16.02 kcal Atomic # 16 Polarization: 65.56 SS G_CDS: -0.46 Total: 65.11 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.09 -7.70 -41.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995441.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.064 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds