Wall clock time and date at job start Mon Mar 30 2020 00:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00217 * 2 1 4 4 H 1.48504 * 109.47094 * 269.99882 * 3 2 1 5 5 H 1.48495 * 109.47068 * 29.99739 * 3 2 1 6 6 H 1.48503 * 109.47152 * 150.00167 * 3 2 1 7 7 C 1.37879 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99584 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00541 * 180.02562 * 7 2 1 10 10 O 1.42108 * 106.39990 * 66.45496 * 9 7 2 11 11 O 1.42098 * 106.39661 * 293.54006 * 9 7 2 12 12 N 1.65591 * 107.22142 * 179.97438 * 9 7 2 13 13 C 1.46501 * 119.99892 * 64.99669 * 12 9 7 14 14 C 1.53000 * 109.47357 * 165.00135 * 13 12 9 15 15 C 1.53001 * 109.47525 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47293 * 180.02562 * 15 14 13 17 17 C 1.38678 * 120.41675 * 270.25216 * 16 15 14 18 18 C 1.38627 * 118.41930 * 180.24221 * 17 16 15 19 19 C 1.38232 * 119.16085 * 359.75178 * 18 17 16 20 20 N 1.31857 * 120.76541 * 359.97438 * 19 18 17 21 21 C 1.31889 * 121.72235 * 0.02562 * 20 19 18 22 22 H 0.97003 * 119.99694 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00135 * 245.00352 * 12 9 7 24 24 H 1.08999 * 109.47162 * 45.00348 * 13 12 9 25 25 H 1.09000 * 109.47550 * 285.00298 * 13 12 9 26 26 H 1.08999 * 109.46811 * 59.99998 * 14 13 12 27 27 H 1.09009 * 109.47047 * 300.00304 * 14 13 12 28 28 H 1.09001 * 109.46704 * 59.99857 * 15 14 13 29 29 H 1.08996 * 109.46675 * 299.99839 * 15 14 13 30 30 H 1.07994 * 120.78944 * 359.96926 * 17 16 15 31 31 H 1.07997 * 120.42083 * 179.72800 * 18 17 16 32 32 H 1.07999 * 119.61954 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.61237 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 16 3.7666 -1.1942 0.0001 10 8 4.1673 -0.6505 1.2504 11 8 4.1682 -0.6489 -1.2491 12 7 4.2567 -2.7759 0.0000 13 6 3.9617 -3.6340 -1.1502 14 6 4.8204 -4.8982 -1.0769 15 6 4.5128 -5.7942 -2.2784 16 6 5.3582 -7.0396 -2.2058 17 6 6.6132 -7.0716 -2.7949 18 6 7.3534 -8.2404 -2.7074 19 6 6.8220 -9.3256 -2.0362 20 7 5.6269 -9.2574 -1.4831 21 6 4.8949 -8.1621 -1.5465 22 1 -0.4850 0.8401 0.0004 23 1 4.7390 -3.1343 0.7614 24 1 4.1850 -3.0962 -2.0715 25 1 2.9073 -3.9098 -1.1369 26 1 4.5972 -5.4361 -0.1555 27 1 5.8750 -4.6224 -1.0902 28 1 4.7364 -5.2560 -3.1995 29 1 3.4584 -6.0699 -2.2654 30 1 7.0027 -6.2080 -3.3134 31 1 8.3328 -8.3025 -3.1583 32 1 7.3924 -10.2398 -1.9632 33 1 3.9203 -8.1440 -1.0816 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995441.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:48 Heat of formation + Delta-G solvation = -86.946936 kcal Electronic energy + Delta-G solvation = -17798.796371 eV Core-core repulsion = 14756.671682 eV Total energy + Delta-G solvation = -3042.124689 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05006 -37.76063 -37.31122 -36.46844 -35.18189 -34.75227 -32.88609 -30.91366 -28.54777 -26.67098 -24.43486 -23.42894 -22.14701 -20.96738 -19.43614 -18.53795 -17.94440 -17.42109 -17.30798 -16.89110 -16.10125 -15.90513 -15.52261 -15.24618 -14.95909 -14.93568 -14.23376 -13.98082 -13.88830 -13.60289 -13.41561 -13.15555 -12.77611 -12.73982 -12.64268 -12.54323 -12.07096 -11.76845 -11.72166 -11.32206 -11.18724 -10.66872 -10.33442 -10.18921 -9.82422 -8.95135 -7.50874 0.15036 0.25470 0.40260 1.06874 1.16064 1.23520 1.90682 2.43592 2.61256 2.91767 3.33557 3.57603 3.79940 3.95453 4.10707 4.14279 4.20718 4.23488 4.28893 4.42552 4.64229 4.70719 4.76447 4.89405 4.98914 5.08700 5.17881 5.26572 5.37121 5.43164 5.48787 5.85799 6.02916 6.34810 6.55768 7.08164 8.22410 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045084 B = 0.003678 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.918881 B = 7610.515585 C = 7834.803905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.107 3.893 3 Si 0.826 3.174 4 H -0.238 1.238 5 H -0.222 1.222 6 H -0.229 1.229 7 C -1.039 5.039 8 H 0.107 0.893 9 S 2.700 3.300 10 O -1.031 7.031 11 O -1.029 7.029 12 N -1.112 6.112 13 C 0.113 3.887 14 C -0.109 4.109 15 C -0.075 4.075 16 C -0.132 4.132 17 C -0.082 4.082 18 C -0.168 4.168 19 C 0.075 3.925 20 N -0.515 5.515 21 C 0.083 3.917 22 H 0.291 0.709 23 H 0.420 0.580 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.161 0.839 32 H 0.174 0.826 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.224 -14.701 -5.902 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.109 4.109 3 Si 0.643 3.357 4 H -0.161 1.161 5 H -0.145 1.145 6 H -0.151 1.151 7 C -1.171 5.171 8 H 0.125 0.875 9 S 2.799 3.201 10 O -1.022 7.022 11 O -1.019 7.019 12 N -0.873 5.873 13 C -0.013 4.013 14 C -0.148 4.148 15 C -0.113 4.113 16 C -0.134 4.134 17 C -0.108 4.108 18 C -0.188 4.188 19 C -0.081 4.081 20 N -0.224 5.224 21 C -0.074 4.074 22 H 0.101 0.899 23 H 0.254 0.746 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.170 0.830 31 H 0.179 0.821 32 H 0.191 0.809 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.178 -14.536 -5.623 19.779 hybrid contribution -0.347 0.953 0.019 1.014 sum 11.831 -13.583 -5.604 18.865 Atomic orbital electron populations 1.70017 1.07503 1.30444 1.40567 1.25180 0.95619 1.01518 0.88606 0.87471 0.82847 0.82759 0.82590 1.16148 1.14470 1.15107 1.31014 1.18209 1.01662 1.66203 0.87463 1.00414 0.75608 0.71770 0.72272 1.93437 1.85230 1.77655 1.45848 1.93372 1.84660 1.77562 1.46295 1.54991 1.73783 1.30024 1.28468 1.21426 1.00170 0.91998 0.87689 1.21700 1.00141 0.93616 0.99372 1.20505 0.99835 0.91989 0.98998 1.20974 0.96470 0.96958 0.98950 1.21898 0.93188 0.99035 0.96701 1.22469 1.02330 0.93642 1.00347 1.23211 0.91649 0.99706 0.93581 1.67689 1.07618 1.27963 1.19152 1.22941 0.99913 0.88276 0.96230 0.89889 0.74553 0.90921 0.91700 0.90505 0.90593 0.89240 0.89348 0.83008 0.82112 0.80892 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.31 13.96 21.45 0.30 -49.01 16 2 C 0.11 6.13 5.47 84.66 0.46 6.59 16 3 Si 0.83 40.87 26.54 68.60 1.82 42.69 16 4 H -0.24 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.22 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.23 -11.60 5.61 99.48 0.56 -11.04 16 7 C -1.04 -57.57 10.26 67.73 0.69 -56.87 16 8 H 0.11 6.04 8.06 -2.91 -0.02 6.02 16 9 S 2.70 130.39 4.24 -56.49 -0.24 130.15 16 10 O -1.03 -54.05 16.02 -128.00 -2.05 -56.10 16 11 O -1.03 -52.96 16.30 -128.00 -2.09 -55.04 16 12 N -1.11 -39.24 6.00 -187.49 -1.12 -40.37 16 13 C 0.11 3.31 6.22 86.38 0.54 3.85 16 14 C -0.11 -2.26 5.34 30.59 0.16 -2.09 16 15 C -0.07 -1.28 5.37 29.85 0.16 -1.12 16 16 C -0.13 -2.34 5.15 -19.77 -0.10 -2.45 16 17 C -0.08 -1.27 9.86 22.47 0.22 -1.05 16 18 C -0.17 -2.32 10.11 22.36 0.23 -2.10 16 19 C 0.08 1.25 11.18 84.69 0.95 2.20 16 20 N -0.52 -11.28 10.36 -195.83 -2.03 -13.31 16 21 C 0.08 1.66 10.86 84.67 0.92 2.58 16 22 H 0.29 15.10 8.31 -92.71 -0.77 14.33 16 23 H 0.42 12.38 8.65 -96.75 -0.84 11.54 16 24 H 0.07 2.20 7.75 -2.39 -0.02 2.18 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.09 1.39 8.10 -2.39 -0.02 1.37 16 29 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 30 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -71.89 298.69 -1.05 -72.93 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.13 Total: 18.50 kcal Atomic # 6 Polarization: -54.69 SS G_CDS: 4.23 Total: -50.45 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -2.85 Total: -102.69 kcal Atomic # 8 Polarization: -107.00 SS G_CDS: -4.14 Total: -111.14 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.82 Total: 42.69 kcal Atomic # 16 Polarization: 130.39 SS G_CDS: -0.24 Total: 130.15 kcal Total: -71.89 -1.05 -72.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995441.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.012 kcal (2) G-P(sol) polarization free energy of solvation -71.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds