Wall clock time and date at job start Mon Mar 30 2020 02:03:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.46499 * 119.99936 * 2 1
4 4 C 1.50704 * 109.46882 * 84.99554 * 3 2 1
5 5 H 1.07992 * 120.00253 * 0.02562 * 4 3 2
6 6 C 1.37883 * 119.99387 * 180.02562 * 4 3 2
7 7 N 1.31517 * 119.99444 * 180.02562 * 6 4 3
8 8 Si 1.86797 * 120.00197 * 0.02562 * 6 4 3
9 9 H 1.48498 * 109.47168 * 90.00339 * 8 6 4
10 10 H 1.48506 * 109.47110 * 209.99999 * 8 6 4
11 11 H 1.48495 * 109.47486 * 330.00111 * 8 6 4
12 12 S 1.65597 * 120.00079 * 179.72039 * 2 1 3
13 13 O 1.42097 * 104.27740 * 206.07308 * 12 2 1
14 14 O 1.42099 * 104.27794 * 333.93338 * 12 2 1
15 15 C 1.81405 * 104.44719 * 90.00234 * 12 2 1
16 16 C 1.50702 * 109.47027 * 179.97438 * 15 12 2
17 17 C 1.38667 * 120.41951 * 269.72240 * 16 15 12
18 18 C 1.38634 * 118.42000 * 179.78336 * 17 16 15
19 19 C 1.38229 * 119.15668 * 0.51220 * 18 17 16
20 20 N 1.31852 * 120.76580 * 359.72822 * 19 18 17
21 21 C 1.31882 * 121.72670 * 359.97438 * 20 19 18
22 22 H 1.08999 * 109.46892 * 90.00398 * 1 2 3
23 23 H 1.09000 * 109.46803 * 209.99571 * 1 2 3
24 24 H 1.09000 * 109.47214 * 330.00364 * 1 2 3
25 25 H 1.08991 * 109.47463 * 204.99792 * 3 2 1
26 26 H 1.09000 * 109.46878 * 325.00020 * 3 2 1
27 27 H 0.96996 * 119.99753 * 179.97438 * 7 6 4
28 28 H 1.09002 * 109.47064 * 299.99900 * 15 12 2
29 29 H 1.09001 * 109.46878 * 60.00248 * 15 12 2
30 30 H 1.07999 * 120.79100 * 0.02562 * 17 16 15
31 31 H 1.07999 * 120.41824 * 180.22123 * 18 17 16
32 32 H 1.08007 * 119.61283 * 179.74857 * 19 18 17
33 33 H 1.08000 * 119.61709 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.3413 1.7657 1.4155
5 1 1.9288 1.1935 2.2332
6 6 2.9996 2.9510 1.6663
7 7 3.1256 3.3844 2.9016
8 14 3.7126 3.9410 0.2518
9 1 2.6932 4.9001 -0.2443
10 1 4.9070 4.6875 0.7225
11 1 4.1043 3.0225 -0.8473
12 16 2.2931 -1.4341 0.0070
13 8 3.5395 -1.1161 0.6107
14 8 1.3970 -2.3531 0.6166
15 6 2.5194 -1.8346 -1.7478
16 6 3.2706 -3.1350 -1.8734
17 6 4.6556 -3.1421 -1.9407
18 6 5.3046 -4.3621 -2.0512
19 6 4.5542 -5.5220 -2.1011
20 7 3.2379 -5.4769 -2.0395
21 6 2.5876 -4.3349 -1.9282
22 1 -0.3633 -0.0001 -1.0277
23 1 -0.3633 -0.8900 0.5138
24 1 -0.3633 0.8900 0.5138
25 1 3.1857 1.1178 -0.4342
26 1 1.6501 2.0042 -0.5894
27 1 3.5890 4.2180 3.0782
28 1 1.5452 -1.9295 -2.2274
29 1 3.0868 -1.0395 -2.2316
30 1 5.2157 -2.2194 -1.9038
31 1 6.3825 -4.4055 -2.1024
32 1 5.0521 -6.4762 -2.1913
33 1 1.5087 -4.3377 -1.8802
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001197418355.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:03:50
Heat of formation + Delta-G solvation = -54.816594 kcal
Electronic energy + Delta-G solvation = -18663.617048 eV
Core-core repulsion = 15622.885635 eV
Total energy + Delta-G solvation = -3040.731413 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.082 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.20541 -38.18132 -37.33609 -36.86720 -34.89400 -34.48753 -32.96747 -30.24953
-28.82739 -26.76012 -24.65957 -23.90146 -23.31470 -19.80865 -19.10249 -18.54216
-18.15356 -17.65857 -17.44920 -17.05602 -16.25675 -16.11438 -15.42754 -14.95778
-14.60377 -14.51631 -14.43056 -14.10349 -14.00553 -13.89338 -13.38393 -13.14525
-13.09686 -12.91290 -12.80858 -12.39753 -12.30178 -12.13368 -11.95463 -11.69229
-10.85000 -10.75306 -10.56415 -10.11244 -9.62528 -8.26688 -6.32766 -0.90212
0.09958 0.21339 1.38206 1.43238 1.52247 1.77351 2.37930 2.71485
2.94033 3.06801 3.16133 3.24699 3.56450 3.72752 3.89873 3.99097
4.05055 4.27016 4.37886 4.59010 4.70380 4.76320 4.76978 4.89968
5.05183 5.10019 5.12447 5.35610 5.50912 5.63033 5.75231 6.32906
6.70496 6.87250 7.29841 8.91649
Molecular weight = 270.08amu
Principal moments of inertia in cm(-1)
A = 0.028722 B = 0.005642 C = 0.005174
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 974.619537 B = 4961.905096 C = 5410.724086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.081 3.919
2 N -0.995 5.995
3 C 0.229 3.771
4 C -0.543 4.543
5 H 0.020 0.980
6 C 0.001 3.999
7 N -0.954 5.954
8 Si 0.949 3.051
9 H -0.254 1.254
10 H -0.287 1.287
11 H -0.232 1.232
12 S 2.590 3.410
13 O -0.986 6.986
14 O -0.991 6.991
15 C -0.554 4.554
16 C -0.160 4.160
17 C -0.078 4.078
18 C -0.167 4.167
19 C 0.096 3.904
20 N -0.507 5.507
21 C 0.098 3.902
22 H 0.093 0.907
23 H 0.070 0.930
24 H 0.065 0.935
25 H 0.044 0.956
26 H 0.060 0.940
27 H 0.267 0.733
28 H 0.180 0.820
29 H 0.168 0.832
30 H 0.155 0.845
31 H 0.174 0.826
32 H 0.192 0.808
33 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.980 -12.139 -17.795 21.563
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 N -0.833 5.833
3 C 0.104 3.896
4 C -0.582 4.582
5 H 0.038 0.962
6 C -0.196 4.196
7 N -0.594 5.594
8 Si 0.770 3.230
9 H -0.178 1.178
10 H -0.212 1.212
11 H -0.154 1.154
12 S 2.689 3.311
13 O -0.977 6.977
14 O -0.982 6.982
15 C -0.685 4.685
16 C -0.164 4.164
17 C -0.105 4.105
18 C -0.186 4.186
19 C -0.061 4.061
20 N -0.215 5.215
21 C -0.060 4.060
22 H 0.111 0.889
23 H 0.088 0.912
24 H 0.084 0.916
25 H 0.062 0.938
26 H 0.078 0.922
27 H 0.076 0.924
28 H 0.197 0.803
29 H 0.186 0.814
30 H 0.173 0.827
31 H 0.192 0.808
32 H 0.209 0.791
33 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges 0.782 -13.208 -16.924 21.482
hybrid contribution 0.636 1.672 -0.020 1.790
sum 1.418 -11.535 -16.943 20.546
Atomic orbital electron populations
1.21685 0.77890 1.03452 1.03366 1.57061 1.15620 1.20868 1.89775
1.19316 0.92417 0.82589 0.95279 1.21736 1.36246 1.06603 0.93604
0.96192 1.26043 0.95819 0.98707 0.98991 1.70099 1.44305 1.22896
1.22123 0.85708 0.78554 0.79261 0.79455 1.17813 1.21241 1.15438
1.05448 0.73354 0.72999 0.79333 1.93564 1.46031 1.83028 1.75047
1.93482 1.65206 1.64257 1.75208 1.29431 1.11931 1.03389 1.23782
1.20197 0.95327 0.94362 1.06479 1.22088 0.93519 1.00994 0.93879
1.22600 1.03600 0.92203 1.00178 1.23531 0.89188 1.00362 0.93017
1.67785 1.11584 1.29286 1.12885 1.23126 1.01742 0.86986 0.94097
0.88902 0.91179 0.91627 0.93772 0.92205 0.92440 0.80268 0.81378
0.82705 0.80840 0.79149 0.80874
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 2.48 10.66 127.77 1.36 3.85 16
2 N -1.00 -37.56 3.10 -543.22 -1.68 -39.24 16
3 C 0.23 10.05 4.06 85.63 0.35 10.40 16
4 C -0.54 -31.62 9.94 25.60 0.25 -31.37 16
5 H 0.02 1.34 8.06 -2.91 -0.02 1.31 16
6 C 0.00 0.08 5.47 84.66 0.46 0.54 16
7 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16
8 Si 0.95 41.63 27.47 68.60 1.88 43.52 16
9 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16
10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16
11 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16
12 S 2.59 93.88 5.36 -56.49 -0.30 93.57 16
13 O -0.99 -45.67 16.98 -127.65 -2.17 -47.84 16
14 O -0.99 -39.89 16.57 -127.65 -2.12 -42.01 16
15 C -0.55 -12.04 6.33 71.24 0.45 -11.59 16
16 C -0.16 -3.78 5.16 -19.77 -0.10 -3.88 16
17 C -0.08 -1.68 9.86 22.47 0.22 -1.46 16
18 C -0.17 -2.91 10.11 22.36 0.23 -2.68 16
19 C 0.10 1.79 11.18 84.69 0.95 2.74 16
20 N -0.51 -12.31 10.36 -195.84 -2.03 -14.34 16
21 C 0.10 2.37 10.86 84.67 0.92 3.29 16
22 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16
23 H 0.07 2.15 6.90 -2.39 -0.02 2.14 16
24 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16
25 H 0.04 1.85 6.67 -2.39 -0.02 1.84 16
26 H 0.06 2.30 7.53 -2.39 -0.02 2.28 16
27 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16
28 H 0.18 2.52 8.09 -2.39 -0.02 2.50 16
29 H 0.17 2.86 8.09 -2.39 -0.02 2.84 16
30 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16
31 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16
32 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16
33 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16
Total: -1.00 -84.66 300.29 0.03 -84.64
By element:
Atomic # 1 Polarization: 11.39 SS G_CDS: 1.05 Total: 12.44 kcal
Atomic # 6 Polarization: -35.26 SS G_CDS: 5.09 Total: -30.17 kcal
Atomic # 7 Polarization: -110.75 SS G_CDS: -3.41 Total: -114.16 kcal
Atomic # 8 Polarization: -85.56 SS G_CDS: -4.28 Total: -89.85 kcal
Atomic # 14 Polarization: 41.63 SS G_CDS: 1.88 Total: 43.52 kcal
Atomic # 16 Polarization: 93.88 SS G_CDS: -0.30 Total: 93.57 kcal
Total: -84.66 0.03 -84.64 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001197418355.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.821 kcal
(2) G-P(sol) polarization free energy of solvation -84.663 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.842 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.638 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.817 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds