Wall clock time and date at job start Mon Mar 30 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 C 1.50692 * 109.47599 * 120.00528 * 2 1 3 5 5 H 1.07994 * 120.00577 * 114.36665 * 4 2 1 6 6 C 1.37882 * 119.99721 * 294.36958 * 4 2 1 7 7 N 1.31516 * 120.00154 * 156.61681 * 6 4 2 8 8 Si 1.86797 * 119.99900 * 336.88813 * 6 4 2 9 9 H 1.48498 * 109.47455 * 179.72674 * 8 6 4 10 10 H 1.48499 * 109.47225 * 299.72808 * 8 6 4 11 11 H 1.48496 * 109.47392 * 59.72743 * 8 6 4 12 12 N 1.46507 * 109.46892 * 240.00455 * 2 1 3 13 13 S 1.65597 * 120.00197 * 95.00082 * 12 2 1 14 14 O 1.42094 * 104.27725 * 181.07168 * 13 12 2 15 15 O 1.42108 * 104.27652 * 308.92839 * 13 12 2 16 16 C 1.81400 * 104.45372 * 64.99677 * 13 12 2 17 17 C 1.50691 * 109.47338 * 180.02562 * 16 13 12 18 18 C 1.38668 * 120.41797 * 269.71962 * 17 16 13 19 19 C 1.38635 * 118.42168 * 179.78077 * 18 17 16 20 20 C 1.38230 * 119.15692 * 0.52180 * 19 18 17 21 21 N 1.31851 * 120.76451 * 359.71616 * 20 19 18 22 22 C 1.31885 * 121.72677 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.46855 * 173.07427 * 1 2 3 24 24 H 1.08997 * 109.46527 * 293.07211 * 1 2 3 25 25 H 1.08996 * 109.47340 * 53.07263 * 1 2 3 26 26 H 0.96997 * 120.00039 * 355.20663 * 7 6 4 27 27 H 0.96996 * 119.99680 * 274.99622 * 12 2 1 28 28 H 1.09006 * 109.46697 * 300.00485 * 16 13 12 29 29 H 1.09000 * 109.46842 * 59.99448 * 16 13 12 30 30 H 1.07994 * 120.79301 * 0.02633 * 18 17 16 31 31 H 1.07992 * 120.42251 * 180.21963 * 19 18 17 32 32 H 1.08005 * 119.62000 * 179.74505 * 20 19 18 33 33 H 1.08005 * 119.61568 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5762 -1.6385 1.1338 6 6 1.7977 -0.1757 2.4793 7 7 1.8028 -0.9539 3.5395 8 14 1.4651 1.6531 2.6648 9 1 1.2392 1.9724 4.0974 10 1 2.6329 2.4219 2.1646 11 1 0.2587 2.0189 1.8800 12 7 2.0183 -0.6906 -1.1963 13 16 2.4121 0.1773 -2.5506 14 8 2.8121 -0.8074 -3.4937 15 8 1.2750 0.9968 -2.7846 16 6 3.8313 1.1874 -2.0442 17 6 4.2863 2.0325 -3.2059 18 6 5.2456 1.5567 -4.0870 19 6 5.6304 2.3671 -5.1440 20 6 5.0572 3.6178 -5.2771 21 7 4.1512 4.0395 -4.4170 22 6 3.7575 3.2938 -3.4030 23 1 -0.3633 -1.0202 -0.1239 24 1 -0.3632 0.4027 0.9455 25 1 -0.3634 0.6174 -0.8215 26 1 1.9022 -1.9133 3.4364 27 1 2.1110 -1.6561 -1.1950 28 1 3.5399 1.8343 -1.2167 29 1 4.6458 0.5363 -1.7269 30 1 5.6796 0.5767 -3.9553 31 1 6.3722 2.0274 -5.8515 32 1 5.3545 4.2569 -6.0954 33 1 3.0132 3.6735 -2.7186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197483624.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:46 Heat of formation + Delta-G solvation = -43.011731 kcal Electronic energy + Delta-G solvation = -18677.842987 eV Core-core repulsion = 15637.623472 eV Total energy + Delta-G solvation = -3040.219516 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.33127 -36.82164 -35.76855 -35.54536 -33.94061 -32.39182 -32.11398 -29.01616 -27.80999 -24.84062 -23.77832 -22.54710 -20.83233 -19.07473 -18.04846 -17.30203 -16.94498 -16.63796 -16.24776 -15.58846 -15.19468 -14.47143 -14.00790 -13.64094 -13.54406 -13.25515 -13.11081 -12.89527 -12.48987 -12.24968 -11.95662 -11.79555 -11.67807 -11.59499 -11.24265 -11.15055 -10.52619 -10.22376 -9.96398 -9.89382 -9.67507 -9.43347 -9.10645 -8.61755 -8.39032 -6.66125 -4.28489 0.37050 0.99239 1.11704 3.18010 3.27997 3.32256 3.48354 3.59747 3.94948 4.23669 4.33817 4.34307 4.48388 4.67939 4.77010 4.86228 5.00559 5.13287 5.26959 5.53317 5.64464 5.87406 5.90906 5.98142 6.29137 6.46231 6.57769 6.65820 7.07208 7.23669 7.56463 7.75497 7.92973 8.19397 8.70821 9.38291 10.70931 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.005919 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.737407 B = 4729.416930 C = 5146.565408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.253 3.747 3 H 0.026 0.974 4 C -0.622 4.622 5 H 0.066 0.934 6 C 0.044 3.956 7 N -0.888 5.888 8 Si 1.023 2.977 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.270 1.270 12 N -1.094 6.094 13 S 2.606 3.394 14 O -0.972 6.972 15 O -0.953 6.953 16 C -0.590 4.590 17 C -0.135 4.135 18 C -0.064 4.064 19 C -0.171 4.171 20 C 0.098 3.902 21 N -0.480 5.480 22 C 0.114 3.886 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.272 0.728 27 H 0.413 0.587 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 5.952 -13.103 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.147 3.853 3 H 0.044 0.956 4 C -0.661 4.661 5 H 0.084 0.916 6 C -0.165 4.165 7 N -0.520 5.520 8 Si 0.850 3.150 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.195 1.195 12 N -0.854 5.854 13 S 2.697 3.303 14 O -0.962 6.962 15 O -0.943 6.943 16 C -0.717 4.717 17 C -0.139 4.139 18 C -0.091 4.091 19 C -0.191 4.191 20 C -0.059 4.059 21 N -0.188 5.188 22 C -0.044 4.044 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.247 0.753 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.585 8.119 -12.883 16.220 hybrid contribution 1.311 -2.365 -0.326 2.724 sum 6.895 5.754 -13.210 15.973 Atomic orbital electron populations 1.22558 0.98336 1.00980 1.00604 1.18788 0.91269 0.91751 0.83467 0.95617 1.22068 1.41822 1.11520 0.90644 0.91568 1.25657 0.93100 1.05803 0.91908 1.70844 1.42562 1.06597 1.31950 0.84341 0.77739 0.75872 0.77086 1.20473 1.20622 1.19533 1.55444 1.80616 1.18718 1.30651 1.05074 0.76220 0.75114 0.73940 1.93540 1.84598 1.57395 1.60628 1.93588 1.45132 1.71274 1.84298 1.29720 1.22438 1.14079 1.05433 1.20120 1.00161 0.96883 0.96743 1.21670 0.94238 1.00134 0.93021 1.22177 1.02048 0.95766 0.99109 1.22900 0.91950 0.94078 0.96991 1.67766 1.12180 1.35665 1.03205 1.22909 0.97147 0.89661 0.94685 0.93181 0.92198 0.94050 0.91759 0.75277 0.83414 0.83606 0.83947 0.84198 0.82366 0.81816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 9.24 37.16 0.34 -3.23 16 2 C 0.25 5.52 2.26 -69.08 -0.16 5.36 16 3 H 0.03 0.54 5.73 -51.93 -0.30 0.24 16 4 C -0.62 -15.74 8.97 -34.44 -0.31 -16.05 16 5 H 0.07 1.78 8.05 -52.49 -0.42 1.35 16 6 C 0.04 1.16 5.19 -17.82 -0.09 1.07 16 7 N -0.89 -25.28 13.70 55.43 0.76 -24.52 16 8 Si 1.02 22.88 26.44 -169.99 -4.50 18.39 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.27 -5.62 6.15 56.52 0.35 -5.27 16 12 N -1.09 -20.58 5.35 -5.88 -0.03 -20.61 16 13 S 2.61 44.66 5.36 -107.50 -0.58 44.09 16 14 O -0.97 -18.07 18.08 -57.54 -1.04 -19.11 16 15 O -0.95 -18.73 17.25 -57.54 -0.99 -19.73 16 16 C -0.59 -8.16 6.11 36.00 0.22 -7.94 16 17 C -0.14 -1.84 5.16 -104.49 -0.54 -2.38 16 18 C -0.06 -0.75 9.86 -39.28 -0.39 -1.14 16 19 C -0.17 -1.71 10.11 -39.44 -0.40 -2.10 16 20 C 0.10 1.05 11.18 -17.55 -0.20 0.86 16 21 N -0.48 -6.52 10.36 -13.25 -0.14 -6.66 16 22 C 0.11 1.58 10.86 -17.55 -0.19 1.39 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 1.31 5.47 -51.93 -0.28 1.03 16 25 H 0.04 0.84 7.57 -51.93 -0.39 0.45 16 26 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16 27 H 0.41 7.36 8.79 -34.47 -0.30 7.05 16 28 H 0.15 1.93 7.39 -51.92 -0.38 1.54 16 29 H 0.15 1.72 8.09 -51.92 -0.42 1.30 16 30 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.16 2.05 8.06 -52.48 -0.42 1.62 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -32.14 296.04 -7.58 -39.72 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.82 Total: 8.13 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -1.71 Total: -24.16 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.59 Total: -51.79 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -2.03 Total: -38.84 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.50 Total: 18.39 kcal Atomic # 16 Polarization: 44.66 SS G_CDS: -0.58 Total: 44.09 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.14 -7.58 -39.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197483624.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.290 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds