Wall clock time and date at job start Mon Mar 30 2020 01:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38671 * 120.78543 * 2 1 4 4 C 1.38183 * 119.16255 * 179.97438 * 3 2 1 5 5 N 1.31888 * 120.76655 * 359.97438 * 4 3 2 6 6 C 1.31863 * 121.72191 * 0.02562 * 5 4 3 7 7 S 1.76193 * 119.61674 * 180.02562 * 6 5 4 8 8 O 1.42105 * 106.40403 * 83.53888 * 7 6 5 9 9 O 1.42098 * 106.40145 * 216.45817 * 7 6 5 10 10 N 1.65606 * 107.21910 * 329.99999 * 7 6 5 11 11 C 1.46504 * 119.99819 * 270.00154 * 10 7 6 12 12 C 1.46489 * 120.00129 * 89.99907 * 10 7 6 13 13 C 1.50706 * 109.47499 * 95.00249 * 12 10 7 14 14 H 1.08003 * 119.98953 * 359.97438 * 13 12 10 15 15 C 1.37870 * 120.00408 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99852 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00096 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47493 * 89.99644 * 17 15 13 19 19 H 1.48500 * 109.47046 * 209.99973 * 17 15 13 20 20 H 1.48497 * 109.46983 * 329.99552 * 17 15 13 21 21 C 1.38227 * 120.76347 * 0.27405 * 6 5 4 22 22 H 1.08996 * 109.46981 * 89.99780 * 1 2 3 23 23 H 1.09001 * 109.46587 * 209.99873 * 1 2 3 24 24 H 1.09000 * 109.47051 * 329.99397 * 1 2 3 25 25 H 1.07999 * 120.42359 * 0.02562 * 3 2 1 26 26 H 1.07997 * 119.61868 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47095 * 89.99844 * 11 10 7 28 28 H 1.08991 * 109.46942 * 210.00257 * 11 10 7 29 29 H 1.09009 * 109.46796 * 329.99896 * 11 10 7 30 30 H 1.09000 * 109.47424 * 215.00305 * 12 10 7 31 31 H 1.08996 * 109.47539 * 335.00135 * 12 10 7 32 32 H 0.97003 * 119.99643 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.41814 * 179.70877 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1522 0.0005 5 7 4.2404 0.0003 0.0016 6 6 3.5984 -1.1515 0.0016 7 16 4.5124 -2.6578 0.0037 8 8 4.8502 -2.9205 1.3588 9 8 3.7842 -3.5702 -0.8066 10 7 5.9388 -2.3668 -0.7858 11 6 6.0286 -2.5679 -2.2342 12 6 7.1107 -1.9083 -0.0359 13 6 7.9696 -3.0922 0.3273 14 1 7.6718 -4.0868 0.0296 15 6 9.1352 -2.9057 1.0395 16 7 9.8844 -3.9390 1.3569 17 14 9.6498 -1.1856 1.5550 18 1 9.0774 -0.8767 2.8899 19 1 11.1314 -1.1115 1.6224 20 1 9.1497 -0.2010 0.5621 21 6 2.2167 -1.1908 -0.0051 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6967 2.1378 0.0004 26 1 4.1582 2.0755 0.0001 27 1 5.7671 -1.6421 -2.7465 28 1 7.0463 -2.8546 -2.4987 29 1 5.3391 -3.3569 -2.5349 30 1 7.6870 -1.2162 -0.6499 31 1 6.7854 -1.4029 0.8733 32 1 10.7043 -3.8078 1.8584 33 1 1.6966 -2.1374 -0.0098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197953457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:01 Heat of formation + Delta-G solvation = -31.739186 kcal Electronic energy + Delta-G solvation = -18836.899600 eV Core-core repulsion = 15797.168898 eV Total energy + Delta-G solvation = -3039.730702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29034 -36.72004 -35.61126 -35.33040 -34.19906 -32.31873 -31.61214 -28.31465 -28.16152 -25.19183 -24.00987 -22.75380 -21.81284 -18.57691 -17.41099 -17.17337 -16.71860 -16.23842 -16.17782 -15.53863 -14.76990 -14.59257 -14.19523 -13.68867 -13.24611 -13.11890 -12.99622 -12.91811 -12.47100 -12.32402 -12.28489 -11.74749 -11.60366 -11.29424 -11.19827 -11.01308 -10.61425 -10.38353 -10.15897 -9.78253 -9.64870 -9.56776 -9.47474 -8.52006 -8.04581 -6.01714 -4.00531 0.53386 0.86800 1.00821 3.26383 3.35357 3.40955 3.42600 3.48158 4.06208 4.33571 4.42490 4.46047 4.70793 4.79549 4.83148 5.14986 5.18389 5.21282 5.30575 5.41264 5.50030 5.60015 5.69821 5.92445 6.00556 6.24845 6.36644 6.51841 6.89475 7.15893 7.41761 7.59527 7.65918 8.55413 9.02676 9.57862 11.11757 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026799 B = 0.006366 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.546499 B = 4397.585234 C = 4902.067341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.059 4.059 3 C -0.134 4.134 4 C 0.084 3.916 5 N -0.398 5.398 6 C -0.428 4.428 7 S 2.694 3.306 8 O -0.928 6.928 9 O -0.965 6.965 10 N -0.964 5.964 11 C 0.094 3.906 12 C 0.230 3.770 13 C -0.532 4.532 14 H 0.079 0.921 15 C 0.074 3.926 16 N -0.897 5.897 17 Si 0.870 3.130 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.262 1.262 21 C -0.094 4.094 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.140 0.860 26 H 0.165 0.835 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.009 11.333 -5.355 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.068 4.068 3 C -0.154 4.154 4 C -0.076 4.076 5 N -0.108 5.108 6 C -0.645 4.645 7 S 2.776 3.224 8 O -0.918 6.918 9 O -0.955 6.955 10 N -0.805 5.805 11 C -0.053 4.053 12 C 0.107 3.893 13 C -0.571 4.571 14 H 0.097 0.903 15 C -0.128 4.128 16 N -0.535 5.535 17 Si 0.697 3.303 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.187 1.187 21 C -0.115 4.115 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.158 0.842 26 H 0.182 0.818 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.209 10.529 -4.904 19.941 hybrid contribution -0.689 1.759 0.225 1.902 sum -16.898 12.287 -4.679 21.410 Atomic orbital electron populations 1.20857 0.89555 1.03704 1.03207 1.20421 0.97144 0.92973 0.96228 1.22264 0.95822 0.98722 0.98566 1.23102 0.92011 0.96819 0.95653 1.67902 1.39433 0.97193 1.06270 1.34440 1.04533 1.17565 1.07939 1.02447 0.72617 0.73051 0.74259 1.93652 1.82132 1.82306 1.33691 1.93541 1.73064 1.58656 1.70212 1.56795 1.24631 1.82651 1.16384 1.21445 1.04452 0.99941 0.79420 1.19491 0.82775 0.96003 0.91033 1.21421 1.05738 0.94428 1.35535 0.90334 1.24830 0.96130 0.96748 0.95137 1.69902 1.14427 1.29807 1.39380 0.86940 0.77900 0.85435 0.80063 1.19810 1.21075 1.18684 1.21782 0.93619 0.99921 0.96176 0.90185 0.90591 0.90764 0.84233 0.81776 0.94137 0.89655 0.91147 0.94619 0.94626 0.92586 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.06 36.01 0.36 -0.47 16 2 C -0.06 -0.65 5.92 -104.31 -0.62 -1.27 16 3 C -0.13 -1.38 9.82 -39.44 -0.39 -1.76 16 4 C 0.08 1.07 11.18 -17.55 -0.20 0.87 16 5 N -0.40 -6.69 10.23 -12.45 -0.13 -6.82 16 6 C -0.43 -7.37 6.77 -17.54 -0.12 -7.49 16 7 S 2.69 55.16 5.61 -107.50 -0.60 54.56 16 8 O -0.93 -22.60 16.99 -57.17 -0.97 -23.57 16 9 O -0.97 -19.58 16.24 -57.17 -0.93 -20.51 16 10 N -0.96 -20.44 3.11 -123.06 -0.38 -20.82 16 11 C 0.09 1.62 10.68 59.85 0.64 2.26 16 12 C 0.23 5.62 4.15 -5.20 -0.02 5.60 16 13 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 16 14 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 15 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 17 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 21 C -0.09 -1.32 9.28 -39.44 -0.37 -1.69 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 24 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 25 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 26 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 29 H 0.07 1.14 7.02 -51.92 -0.36 0.77 16 30 H 0.04 0.83 7.17 -51.93 -0.37 0.46 16 31 H 0.04 0.89 7.04 -51.93 -0.37 0.52 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.15 1.79 7.93 -52.49 -0.42 1.37 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -36.00 299.83 -7.60 -43.59 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -4.06 Total: -3.14 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -1.15 Total: -17.61 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.26 Total: -54.73 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.90 Total: -44.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 55.16 SS G_CDS: -0.60 Total: 54.56 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.00 -7.60 -43.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197953457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.853 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds