Wall clock time and date at job start Mon Mar 30 2020 01:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38671 * 120.78543 * 2 1 4 4 C 1.38183 * 119.16255 * 179.97438 * 3 2 1 5 5 N 1.31888 * 120.76655 * 359.97438 * 4 3 2 6 6 C 1.31863 * 121.72191 * 0.02562 * 5 4 3 7 7 S 1.76193 * 119.61674 * 180.02562 * 6 5 4 8 8 O 1.42105 * 106.40403 * 83.53888 * 7 6 5 9 9 O 1.42098 * 106.40145 * 216.45817 * 7 6 5 10 10 N 1.65606 * 107.21910 * 329.99999 * 7 6 5 11 11 C 1.46504 * 119.99819 * 270.00154 * 10 7 6 12 12 C 1.46489 * 120.00129 * 89.99907 * 10 7 6 13 13 C 1.50706 * 109.47499 * 95.00249 * 12 10 7 14 14 H 1.08003 * 119.98953 * 359.97438 * 13 12 10 15 15 C 1.37870 * 120.00408 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99852 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00096 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47493 * 89.99644 * 17 15 13 19 19 H 1.48500 * 109.47046 * 209.99973 * 17 15 13 20 20 H 1.48497 * 109.46983 * 329.99552 * 17 15 13 21 21 C 1.38227 * 120.76347 * 0.27405 * 6 5 4 22 22 H 1.08996 * 109.46981 * 89.99780 * 1 2 3 23 23 H 1.09001 * 109.46587 * 209.99873 * 1 2 3 24 24 H 1.09000 * 109.47051 * 329.99397 * 1 2 3 25 25 H 1.07999 * 120.42359 * 0.02562 * 3 2 1 26 26 H 1.07997 * 119.61868 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47095 * 89.99844 * 11 10 7 28 28 H 1.08991 * 109.46942 * 210.00257 * 11 10 7 29 29 H 1.09009 * 109.46796 * 329.99896 * 11 10 7 30 30 H 1.09000 * 109.47424 * 215.00305 * 12 10 7 31 31 H 1.08996 * 109.47539 * 335.00135 * 12 10 7 32 32 H 0.97003 * 119.99643 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.41814 * 179.70877 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1522 0.0005 5 7 4.2404 0.0003 0.0016 6 6 3.5984 -1.1515 0.0016 7 16 4.5124 -2.6578 0.0037 8 8 4.8502 -2.9205 1.3588 9 8 3.7842 -3.5702 -0.8066 10 7 5.9388 -2.3668 -0.7858 11 6 6.0286 -2.5679 -2.2342 12 6 7.1107 -1.9083 -0.0359 13 6 7.9696 -3.0922 0.3273 14 1 7.6718 -4.0868 0.0296 15 6 9.1352 -2.9057 1.0395 16 7 9.8844 -3.9390 1.3569 17 14 9.6498 -1.1856 1.5550 18 1 9.0774 -0.8767 2.8899 19 1 11.1314 -1.1115 1.6224 20 1 9.1497 -0.2010 0.5621 21 6 2.2167 -1.1908 -0.0051 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6967 2.1378 0.0004 26 1 4.1582 2.0755 0.0001 27 1 5.7671 -1.6421 -2.7465 28 1 7.0463 -2.8546 -2.4987 29 1 5.3391 -3.3569 -2.5349 30 1 7.6870 -1.2162 -0.6499 31 1 6.7854 -1.4029 0.8733 32 1 10.7043 -3.8078 1.8584 33 1 1.6966 -2.1374 -0.0098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197953457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:01 Heat of formation + Delta-G solvation = -60.199635 kcal Electronic energy + Delta-G solvation = -18838.133737 eV Core-core repulsion = 15797.168898 eV Total energy + Delta-G solvation = -3040.964839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27304 -38.38450 -37.33560 -37.02246 -35.08600 -34.49431 -32.61893 -30.27032 -28.89145 -26.84875 -25.10751 -23.79200 -23.68054 -20.03170 -19.17590 -18.69392 -18.34895 -17.62043 -17.17816 -17.08504 -16.30762 -15.75962 -15.56382 -15.27373 -14.64445 -14.46641 -14.11912 -13.92803 -13.86977 -13.60505 -13.45250 -13.29789 -13.16977 -13.14082 -13.03380 -12.37262 -12.27702 -12.20988 -11.94987 -11.68229 -10.77608 -10.71442 -10.63317 -10.60471 -9.75560 -8.27668 -6.32937 -0.71055 -0.46150 0.09229 1.37544 1.41805 1.50894 1.81484 2.37227 2.42891 2.61662 3.06494 3.26528 3.58320 3.67489 3.86620 3.91156 4.01071 4.08701 4.48645 4.60305 4.67053 4.68791 4.74040 4.76530 4.91605 5.04219 5.11560 5.16329 5.32984 5.49433 5.53956 5.73158 6.31468 6.57464 6.69280 7.29847 8.89726 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026799 B = 0.006366 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.546499 B = 4397.585234 C = 4902.067341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.057 4.057 3 C -0.112 4.112 4 C 0.075 3.925 5 N -0.436 5.436 6 C -0.449 4.449 7 S 2.700 3.300 8 O -0.984 6.984 9 O -0.977 6.977 10 N -0.978 5.978 11 C 0.088 3.912 12 C 0.242 3.758 13 C -0.544 4.544 14 H 0.032 0.968 15 C 0.010 3.990 16 N -0.947 5.947 17 Si 0.940 3.060 18 H -0.272 1.272 19 H -0.275 1.275 20 H -0.230 1.230 21 C -0.106 4.106 22 H 0.096 0.904 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.190 0.810 26 H 0.197 0.803 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.268 0.732 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.238 15.505 -6.029 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.066 4.066 3 C -0.131 4.131 4 C -0.086 4.086 5 N -0.147 5.147 6 C -0.669 4.669 7 S 2.790 3.210 8 O -0.974 6.974 9 O -0.967 6.967 10 N -0.818 5.818 11 C -0.057 4.057 12 C 0.118 3.882 13 C -0.583 4.583 14 H 0.050 0.950 15 C -0.188 4.188 16 N -0.587 5.587 17 Si 0.762 3.238 18 H -0.197 1.197 19 H -0.200 1.200 20 H -0.153 1.153 21 C -0.128 4.128 22 H 0.114 0.886 23 H 0.097 0.903 24 H 0.118 0.882 25 H 0.207 0.793 26 H 0.214 0.786 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.419 14.620 -5.616 24.177 hybrid contribution -0.183 0.499 0.390 0.659 sum -18.602 15.119 -5.227 24.534 Atomic orbital electron populations 1.20991 0.86397 1.05186 1.04642 1.20932 0.99268 0.91960 0.94445 1.22823 0.94958 1.00410 0.94889 1.23753 0.93694 0.96381 0.94791 1.67782 1.40790 0.98094 1.08035 1.33235 1.05076 1.16062 1.12568 1.01668 0.72466 0.74015 0.72895 1.93576 1.83146 1.84245 1.36445 1.93505 1.72907 1.60417 1.69869 1.56703 1.24272 1.83200 1.17596 1.21650 1.04378 1.01950 0.77747 1.19175 0.83326 0.94140 0.91608 1.21732 1.06793 0.94254 1.35549 0.94959 1.25860 0.96051 1.01833 0.95006 1.70065 1.15243 1.32755 1.40655 0.85835 0.77909 0.79930 0.80163 1.19722 1.20039 1.15286 1.22050 0.92580 1.01986 0.96172 0.88563 0.90304 0.88213 0.79326 0.78641 0.90786 0.90312 0.90549 0.92647 0.95070 0.92297 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.06 71.24 0.72 -0.39 16 2 C -0.06 -1.04 5.92 -19.67 -0.12 -1.16 16 3 C -0.11 -1.72 9.82 22.36 0.22 -1.50 16 4 C 0.07 1.61 11.18 84.67 0.95 2.55 16 5 N -0.44 -13.92 10.23 -193.31 -1.98 -15.90 16 6 C -0.45 -15.21 6.77 84.69 0.57 -14.64 16 7 S 2.70 114.58 5.61 -56.49 -0.32 114.26 16 8 O -0.98 -50.71 16.99 -128.00 -2.17 -52.88 16 9 O -0.98 -41.10 16.24 -128.00 -2.08 -43.17 16 10 N -0.98 -42.40 3.11 -543.24 -1.69 -44.09 16 11 C 0.09 3.05 10.68 127.77 1.36 4.42 16 12 C 0.24 11.96 4.15 85.64 0.36 12.32 16 13 C -0.54 -32.85 9.94 25.60 0.25 -32.59 16 14 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 15 C 0.01 0.62 5.47 84.65 0.46 1.09 16 16 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 17 Si 0.94 44.49 27.47 68.60 1.88 46.37 16 18 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.23 -9.63 6.54 99.48 0.65 -8.98 16 21 C -0.11 -2.82 9.28 22.36 0.21 -2.61 16 22 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.08 0.74 8.10 -2.39 -0.02 0.72 16 24 H 0.10 0.50 8.10 -2.39 -0.02 0.48 16 25 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 26 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 2.80 8.07 -2.39 -0.02 2.78 16 29 H 0.08 2.52 7.02 -2.38 -0.02 2.50 16 30 H 0.06 2.51 7.17 -2.39 -0.02 2.49 16 31 H 0.03 1.57 7.04 -2.39 -0.02 1.56 16 32 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 33 H 0.15 3.66 7.93 -2.91 -0.02 3.64 16 Total: -1.00 -83.58 299.83 -0.02 -83.60 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.05 Total: 5.16 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 4.98 Total: -32.50 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -3.37 Total: -120.84 kcal Atomic # 8 Polarization: -91.80 SS G_CDS: -4.25 Total: -96.06 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Atomic # 16 Polarization: 114.58 SS G_CDS: -0.32 Total: 114.26 kcal Total: -83.58 -0.02 -83.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197953457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.397 kcal (2) G-P(sol) polarization free energy of solvation -83.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds