Wall clock time and date at job start Mon Mar 30 2020 01:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38671 * 120.79372 * 2 1 4 4 C 1.38179 * 119.16611 * 179.97438 * 3 2 1 5 5 N 1.31884 * 120.76577 * 359.97123 * 4 3 2 6 6 C 1.31854 * 121.72658 * 0.02766 * 5 4 3 7 7 S 1.76199 * 119.62030 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40227 * 336.45635 * 7 6 5 9 9 O 1.42107 * 106.40094 * 203.54052 * 7 6 5 10 10 N 1.65593 * 107.21807 * 89.99890 * 7 6 5 11 11 C 1.46506 * 120.00245 * 65.00204 * 10 7 6 12 12 C 1.52997 * 109.47289 * 165.00019 * 11 10 7 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00542 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00563 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99513 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47173 * 90.00033 * 17 15 13 19 19 H 1.48502 * 109.46811 * 209.99659 * 17 15 13 20 20 H 1.48495 * 109.47087 * 329.99741 * 17 15 13 21 21 C 1.38228 * 120.76205 * 0.27170 * 6 5 4 22 22 H 1.09007 * 109.46820 * 90.00362 * 1 2 3 23 23 H 1.08999 * 109.47090 * 209.99943 * 1 2 3 24 24 H 1.08994 * 109.47350 * 330.00545 * 1 2 3 25 25 H 1.08001 * 120.41280 * 359.97438 * 3 2 1 26 26 H 1.08000 * 119.61505 * 180.02562 * 4 3 2 27 27 H 0.97000 * 120.00411 * 244.99876 * 10 7 6 28 28 H 1.09001 * 109.47060 * 285.00288 * 11 10 7 29 29 H 1.09004 * 109.47073 * 44.99777 * 11 10 7 30 30 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 31 31 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 32 32 H 0.96999 * 120.00061 * 180.02562 * 16 15 13 33 33 H 1.07999 * 120.42196 * 179.70383 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1520 0.0005 5 7 4.2403 0.0000 0.0016 6 6 3.5984 -1.1517 0.0017 7 16 4.5123 -2.6581 0.0025 8 8 5.7890 -2.3531 -0.5416 9 8 3.6521 -3.6496 -0.5421 10 7 4.7659 -3.0767 1.5844 11 6 3.6293 -3.4205 2.4425 12 6 4.1370 -4.1163 3.7070 13 6 2.9679 -4.4704 4.5894 14 1 1.9631 -4.2235 4.2795 15 6 3.1806 -5.1097 5.7923 16 7 2.1603 -5.4183 6.5626 17 14 4.9184 -5.5375 6.3280 18 1 5.4869 -4.4103 7.1101 19 1 4.8897 -6.7598 7.1708 20 1 5.7598 -5.7823 5.1292 21 6 2.2167 -1.1909 -0.0050 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6968 2.1377 -0.0004 26 1 4.1583 2.0753 0.0010 27 1 5.6671 -3.0944 1.9430 28 1 3.0941 -2.5118 2.7178 29 1 2.9572 -4.0892 1.9047 30 1 4.6723 -5.0251 3.4316 31 1 4.8091 -3.4476 4.2447 32 1 2.3101 -5.8677 7.4090 33 1 1.6965 -2.1374 -0.0098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198027365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:04 Heat of formation + Delta-G solvation = -49.353909 kcal Electronic energy + Delta-G solvation = -18294.445637 eV Core-core repulsion = 15253.951103 eV Total energy + Delta-G solvation = -3040.494533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39298 -37.10394 -35.72153 -35.59235 -34.24854 -32.72290 -31.72971 -29.72948 -28.16771 -24.60727 -24.19437 -22.86057 -20.94080 -19.33710 -17.88388 -17.17683 -17.03280 -16.75486 -16.24448 -15.48738 -14.89746 -14.61352 -14.24567 -14.21614 -14.02664 -13.23276 -13.12139 -12.89009 -12.66321 -12.37200 -12.12244 -11.97674 -11.87914 -11.64458 -11.38235 -11.23730 -10.52488 -10.09640 -9.94540 -9.83721 -9.78497 -9.67862 -9.36964 -9.06470 -8.62705 -6.13666 -4.13908 0.31046 0.59541 0.94106 3.03217 3.26026 3.34393 3.36700 3.37093 3.84994 3.98672 4.37513 4.38134 4.59891 4.71669 4.76263 4.98869 5.17482 5.20407 5.25562 5.40927 5.48712 5.58114 5.70819 5.90484 5.99829 6.21142 6.29483 6.46152 7.09521 7.19275 7.27238 7.45687 7.65979 8.39474 8.88537 9.47185 10.99116 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.005376 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.616718 B = 5207.162371 C = 5907.462225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.057 4.057 3 C -0.125 4.125 4 C 0.081 3.919 5 N -0.396 5.396 6 C -0.438 4.438 7 S 2.702 3.298 8 O -0.948 6.948 9 O -0.950 6.950 10 N -1.109 6.109 11 C 0.124 3.876 12 C -0.018 4.018 13 C -0.525 4.525 14 H 0.075 0.925 15 C 0.070 3.930 16 N -0.899 5.899 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.264 1.264 21 C -0.084 4.084 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.142 0.858 26 H 0.166 0.834 27 H 0.419 0.581 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.020 0.980 32 H 0.265 0.735 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 12.798 -12.976 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.080 4.080 5 N -0.106 5.106 6 C -0.656 4.656 7 S 2.786 3.214 8 O -0.938 6.938 9 O -0.939 6.939 10 N -0.871 5.871 11 C 0.000 4.000 12 C -0.057 4.057 13 C -0.564 4.564 14 H 0.094 0.906 15 C -0.132 4.132 16 N -0.537 5.537 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.105 4.105 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.160 0.840 26 H 0.183 0.817 27 H 0.254 0.746 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.232 12.255 -13.620 18.323 hybrid contribution -0.166 0.547 0.987 1.141 sum 0.066 12.802 -12.633 17.986 Atomic orbital electron populations 1.20892 0.89282 1.04200 1.03236 1.20494 0.97454 0.92880 0.95755 1.22339 0.95801 0.98965 0.97427 1.23064 0.92076 0.96627 0.96241 1.67775 1.39524 0.97188 1.06144 1.33826 1.04411 1.16850 1.10472 1.01993 0.73386 0.72978 0.73028 1.93571 1.38975 1.84711 1.76564 1.93620 1.68940 1.54618 1.76757 1.55505 1.16887 1.83888 1.30864 1.21500 0.86180 0.99408 0.92945 1.19760 0.97999 0.95924 0.92001 1.20937 0.93561 1.38936 1.02969 0.90642 1.24981 0.96990 0.94955 0.96247 1.69895 1.30450 1.41245 1.12114 0.86781 0.85273 0.78218 0.79050 1.20226 1.21238 1.18839 1.22004 0.93692 1.00446 0.94336 0.90172 0.90106 0.90627 0.84028 0.81686 0.74592 0.92581 0.90498 0.95406 0.96176 0.92535 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.06 36.01 0.36 -0.55 16 2 C -0.06 -0.61 5.92 -104.31 -0.62 -1.23 16 3 C -0.13 -1.19 9.82 -39.44 -0.39 -1.58 16 4 C 0.08 0.90 11.18 -17.55 -0.20 0.71 16 5 N -0.40 -5.85 10.11 -12.45 -0.13 -5.97 16 6 C -0.44 -6.53 6.83 -17.55 -0.12 -6.65 16 7 S 2.70 43.41 5.80 -107.50 -0.62 42.79 16 8 O -0.95 -17.17 17.85 -57.17 -1.02 -18.19 16 9 O -0.95 -16.83 16.72 -57.17 -0.96 -17.78 16 10 N -1.11 -17.89 6.00 -10.61 -0.06 -17.95 16 11 C 0.12 2.32 6.16 -4.04 -0.02 2.29 16 12 C -0.02 -0.40 4.18 -27.89 -0.12 -0.51 16 13 C -0.53 -14.25 9.66 -34.44 -0.33 -14.59 16 14 H 0.08 2.17 7.99 -52.48 -0.42 1.75 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -26.83 13.96 55.43 0.77 -26.05 16 17 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 21 C -0.08 -1.09 9.27 -39.44 -0.37 -1.46 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 24 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 25 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 26 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.42 6.09 8.65 -34.47 -0.30 5.80 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.42 7.75 -51.93 -0.40 1.02 16 30 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 31 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 33 H 0.16 1.86 7.60 -52.49 -0.40 1.46 16 LS Contribution 300.91 15.07 4.53 4.53 Total: -1.00 -34.56 300.91 -8.03 -42.59 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.99 Total: 1.40 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -1.90 Total: -21.69 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.58 Total: -49.98 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.98 Total: -35.97 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: 43.41 SS G_CDS: -0.62 Total: 42.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.56 -8.03 -42.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198027365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.759 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds