Wall clock time and date at job start Mon Mar 30 2020 01:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38671 * 120.79372 * 2 1 4 4 C 1.38179 * 119.16611 * 179.97438 * 3 2 1 5 5 N 1.31884 * 120.76577 * 359.97123 * 4 3 2 6 6 C 1.31854 * 121.72658 * 0.02766 * 5 4 3 7 7 S 1.76199 * 119.62030 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40227 * 336.45635 * 7 6 5 9 9 O 1.42107 * 106.40094 * 203.54052 * 7 6 5 10 10 N 1.65593 * 107.21807 * 89.99890 * 7 6 5 11 11 C 1.46506 * 120.00245 * 65.00204 * 10 7 6 12 12 C 1.52997 * 109.47289 * 165.00019 * 11 10 7 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00542 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00563 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99513 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47173 * 90.00033 * 17 15 13 19 19 H 1.48502 * 109.46811 * 209.99659 * 17 15 13 20 20 H 1.48495 * 109.47087 * 329.99741 * 17 15 13 21 21 C 1.38228 * 120.76205 * 0.27170 * 6 5 4 22 22 H 1.09007 * 109.46820 * 90.00362 * 1 2 3 23 23 H 1.08999 * 109.47090 * 209.99943 * 1 2 3 24 24 H 1.08994 * 109.47350 * 330.00545 * 1 2 3 25 25 H 1.08001 * 120.41280 * 359.97438 * 3 2 1 26 26 H 1.08000 * 119.61505 * 180.02562 * 4 3 2 27 27 H 0.97000 * 120.00411 * 244.99876 * 10 7 6 28 28 H 1.09001 * 109.47060 * 285.00288 * 11 10 7 29 29 H 1.09004 * 109.47073 * 44.99777 * 11 10 7 30 30 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 31 31 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 32 32 H 0.96999 * 120.00061 * 180.02562 * 16 15 13 33 33 H 1.07999 * 120.42196 * 179.70383 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1520 0.0005 5 7 4.2403 0.0000 0.0016 6 6 3.5984 -1.1517 0.0017 7 16 4.5123 -2.6581 0.0025 8 8 5.7890 -2.3531 -0.5416 9 8 3.6521 -3.6496 -0.5421 10 7 4.7659 -3.0767 1.5844 11 6 3.6293 -3.4205 2.4425 12 6 4.1370 -4.1163 3.7070 13 6 2.9679 -4.4704 4.5894 14 1 1.9631 -4.2235 4.2795 15 6 3.1806 -5.1097 5.7923 16 7 2.1603 -5.4183 6.5626 17 14 4.9184 -5.5375 6.3280 18 1 5.4869 -4.4103 7.1101 19 1 4.8897 -6.7598 7.1708 20 1 5.7598 -5.7823 5.1292 21 6 2.2167 -1.1909 -0.0050 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6968 2.1377 -0.0004 26 1 4.1583 2.0753 0.0010 27 1 5.6671 -3.0944 1.9430 28 1 3.0941 -2.5118 2.7178 29 1 2.9572 -4.0892 1.9047 30 1 4.6723 -5.0251 3.4316 31 1 4.8091 -3.4476 4.2447 32 1 2.3101 -5.8677 7.4090 33 1 1.6965 -2.1374 -0.0098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198027365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:04 Heat of formation + Delta-G solvation = -76.495107 kcal Electronic energy + Delta-G solvation = -18295.622567 eV Core-core repulsion = 15253.951103 eV Total energy + Delta-G solvation = -3041.671464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28218 -38.45287 -37.14449 -37.07287 -35.07200 -34.72737 -32.63347 -31.54678 -28.89072 -26.43244 -25.13148 -23.73757 -22.70381 -20.61440 -19.21695 -18.72910 -18.37868 -17.94015 -17.09860 -16.86583 -16.25985 -15.84851 -15.66879 -15.57232 -15.38704 -14.63375 -13.94096 -13.90788 -13.62749 -13.57672 -13.45745 -13.35942 -13.26494 -13.19877 -13.13290 -12.34514 -12.19660 -11.82535 -11.81152 -11.45870 -10.82755 -10.74765 -10.64259 -10.61859 -10.41291 -8.28418 -6.33494 -0.81351 -0.46208 0.08058 1.38940 1.41588 1.52270 1.83942 2.33733 2.37531 2.68180 2.99071 3.07525 3.63847 3.67523 3.90248 3.95715 4.03954 4.10924 4.43126 4.47830 4.61500 4.62804 4.70359 4.75013 4.83255 5.12265 5.16360 5.34154 5.43116 5.52219 5.61045 6.01491 6.25989 6.54260 6.73878 7.31166 8.87489 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.005376 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.616718 B = 5207.162371 C = 5907.462225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.109 4.109 4 C 0.073 3.927 5 N -0.430 5.430 6 C -0.458 4.458 7 S 2.720 3.280 8 O -0.972 6.972 9 O -0.974 6.974 10 N -1.106 6.106 11 C 0.135 3.865 12 C -0.018 4.018 13 C -0.533 4.533 14 H 0.043 0.957 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.945 3.055 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.245 1.245 21 C -0.101 4.101 22 H 0.096 0.904 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.187 0.813 26 H 0.199 0.801 27 H 0.426 0.574 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.267 0.733 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 14.799 -13.447 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.072 4.072 3 C -0.129 4.129 4 C -0.089 4.089 5 N -0.142 5.142 6 C -0.678 4.678 7 S 2.808 3.192 8 O -0.962 6.962 9 O -0.963 6.963 10 N -0.868 5.868 11 C 0.010 3.990 12 C -0.057 4.057 13 C -0.572 4.572 14 H 0.061 0.939 15 C -0.188 4.188 16 N -0.587 5.587 17 Si 0.769 3.231 18 H -0.191 1.191 19 H -0.213 1.213 20 H -0.168 1.168 21 C -0.122 4.122 22 H 0.114 0.886 23 H 0.093 0.907 24 H 0.115 0.885 25 H 0.204 0.796 26 H 0.216 0.784 27 H 0.263 0.737 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.726 14.219 -14.107 20.043 hybrid contribution -0.449 0.076 1.077 1.169 sum 0.277 14.295 -13.031 19.345 Atomic orbital electron populations 1.20989 0.87040 1.05021 1.04490 1.20935 0.99108 0.92423 0.94688 1.22841 0.95245 1.00302 0.94483 1.23738 0.93424 0.96567 0.95127 1.67715 1.40692 0.98045 1.07705 1.33202 1.04830 1.16278 1.13475 1.01149 0.72684 0.73033 0.72370 1.93531 1.40513 1.85254 1.76889 1.93580 1.69219 1.56331 1.77187 1.55302 1.16685 1.84340 1.30522 1.21205 0.86691 0.99391 0.91762 1.19700 0.96459 0.96684 0.92876 1.21288 0.93884 1.38284 1.03705 0.93866 1.25916 1.01442 0.95018 0.96430 1.70042 1.33039 1.42788 1.12858 0.85730 0.80046 0.78088 0.79250 1.19098 1.21259 1.16804 1.22193 0.93297 1.01814 0.94942 0.88574 0.90688 0.88454 0.79623 0.78411 0.73709 0.91823 0.90892 0.95056 0.94855 0.92427 0.82686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 10.06 71.24 0.72 -0.76 16 2 C -0.06 -1.19 5.92 -19.67 -0.12 -1.31 16 3 C -0.11 -1.68 9.82 22.36 0.22 -1.46 16 4 C 0.07 1.43 11.18 84.67 0.95 2.37 16 5 N -0.43 -12.22 10.11 -193.32 -1.95 -14.17 16 6 C -0.46 -13.50 6.83 84.69 0.58 -12.92 16 7 S 2.72 87.99 5.80 -56.49 -0.33 87.66 16 8 O -0.97 -35.42 17.85 -128.00 -2.29 -37.70 16 9 O -0.97 -35.11 16.72 -128.00 -2.14 -37.25 16 10 N -1.11 -35.22 6.00 -187.48 -1.12 -36.34 16 11 C 0.14 5.00 6.16 86.38 0.53 5.53 16 12 C -0.02 -0.80 4.18 29.85 0.12 -0.67 16 13 C -0.53 -29.25 9.66 25.60 0.25 -29.01 16 14 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 15 C 0.01 0.54 5.47 84.65 0.46 1.00 16 16 N -0.95 -57.67 13.96 21.45 0.30 -57.37 16 17 Si 0.95 42.70 27.47 68.60 1.88 44.58 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 21 C -0.10 -2.57 9.27 22.36 0.21 -2.36 16 22 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 24 H 0.10 0.80 8.10 -2.39 -0.02 0.78 16 25 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 26 H 0.20 2.33 8.06 -2.91 -0.02 2.30 16 27 H 0.43 12.05 8.65 -96.75 -0.84 11.21 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.74 7.75 -2.38 -0.02 2.72 16 30 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 31 H 0.03 1.38 7.57 -2.39 -0.02 1.37 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.16 3.78 7.60 -2.91 -0.02 3.76 16 Total: -1.00 -75.49 300.91 -1.50 -76.98 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.23 Total: 13.19 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 3.92 Total: -39.58 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -2.78 Total: -107.88 kcal Atomic # 8 Polarization: -70.52 SS G_CDS: -4.43 Total: -74.95 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Atomic # 16 Polarization: 87.99 SS G_CDS: -0.33 Total: 87.66 kcal Total: -75.49 -1.50 -76.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198027365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.489 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds