Wall clock time and date at job start Mon Mar 30 2020 00:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99494 * 2 1 4 4 H 1.48503 * 109.46971 * 239.99798 * 3 2 1 5 5 H 1.48498 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46755 * 120.00011 * 3 2 1 7 7 C 1.37871 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99668 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00283 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47135 * 179.97438 * 9 7 2 11 11 C 1.42894 * 114.00081 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47393 * 330.00060 * 11 10 9 13 13 C 1.53003 * 109.47364 * 89.99491 * 11 10 9 14 14 Cl 1.80299 * 109.47328 * 295.00424 * 13 11 10 15 15 C 1.52998 * 109.47288 * 209.99810 * 11 10 9 16 16 O 1.42901 * 109.47046 * 294.99963 * 15 11 10 17 17 C 1.35905 * 116.99604 * 179.97438 * 16 15 11 18 18 C 1.38722 * 120.05728 * 359.72917 * 17 16 15 19 19 C 1.38150 * 119.94161 * 179.74227 * 18 17 16 20 20 C 1.38261 * 120.05672 * 0.50783 * 19 18 17 21 21 C 1.38268 * 120.10988 * 359.76619 * 20 19 18 22 22 C 1.38139 * 120.05525 * 359.97438 * 21 20 19 23 23 H 0.96994 * 120.00534 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47110 * 60.00129 * 9 7 2 25 25 H 1.08994 * 109.47061 * 299.99716 * 9 7 2 26 26 H 1.09010 * 109.46796 * 55.00344 * 13 11 10 27 27 H 1.08999 * 109.47053 * 174.99831 * 13 11 10 28 28 H 1.08996 * 109.47090 * 174.99747 * 15 11 10 29 29 H 1.08999 * 109.47084 * 54.99920 * 15 11 10 30 30 H 1.08006 * 120.03385 * 359.97438 * 18 17 16 31 31 H 1.08007 * 119.97088 * 180.27367 * 19 18 17 32 32 H 1.08001 * 119.94795 * 179.74501 * 20 19 18 33 33 H 1.07994 * 119.97151 * 179.97438 * 21 20 19 34 34 H 1.08005 * 120.02930 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5654 -4.8754 0.0000 12 1 0.6054 -4.8209 0.5135 13 6 1.3464 -5.3354 -1.4428 14 17 0.1609 -4.2420 -2.2489 15 6 2.4737 -5.8732 0.7212 16 8 3.6872 -6.0321 -0.0165 17 6 4.6102 -6.8904 0.4917 18 6 4.3556 -7.5614 1.6789 19 6 5.2934 -8.4373 2.1906 20 6 6.4892 -8.6376 1.5261 21 6 6.7477 -7.9657 0.3456 22 6 5.8110 -7.0928 -0.1730 23 1 -0.4850 0.8399 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.2936 -5.3049 -1.9815 27 1 0.9602 -6.3547 -1.4444 28 1 1.9671 -6.8352 0.7989 29 1 2.7017 -5.5009 1.7199 30 1 3.4235 -7.4020 2.2008 31 1 5.0938 -8.9633 3.1126 32 1 7.2227 -9.3197 1.9299 33 1 7.6826 -8.1235 -0.1713 34 1 6.0135 -6.5679 -1.0949 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205621664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:59 Heat of formation + Delta-G solvation = -72.974857 kcal Electronic energy + Delta-G solvation = -18006.419036 eV Core-core repulsion = 14930.563764 eV Total energy + Delta-G solvation = -3075.855272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11048 -37.95364 -36.72542 -35.26330 -32.87540 -31.55380 -30.95908 -29.56952 -27.00388 -26.49525 -22.89386 -22.37451 -22.28421 -20.61119 -18.34173 -16.59866 -16.32797 -16.00827 -15.73977 -15.36061 -14.67693 -14.58448 -14.28256 -14.04544 -13.48072 -13.22096 -12.89963 -12.59825 -12.53357 -11.80815 -11.65000 -11.59884 -11.06693 -10.92038 -10.89204 -10.76490 -10.70885 -10.35521 -10.01034 -9.88082 -9.07923 -9.04486 -8.72930 -8.20471 -7.95697 -6.04921 -4.05422 1.26774 1.40843 2.69797 3.24398 3.35395 3.37954 3.41871 3.73941 4.30902 4.60452 4.73486 4.81565 4.89407 5.02927 5.05582 5.22248 5.30338 5.31628 5.41046 5.46155 5.57953 5.65424 5.83197 5.93637 6.05715 6.26702 6.34171 6.44975 6.72523 7.17076 7.46300 7.57702 7.82482 8.19673 8.54283 9.04685 9.57437 11.06226 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.004548 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.502369 B = 6154.945491 C = 7058.451273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.176 3.824 10 O -0.374 6.374 11 C 0.083 3.917 12 H 0.083 0.917 13 C -0.053 4.053 14 Cl -0.168 7.168 15 C 0.066 3.934 16 O -0.299 6.299 17 C 0.138 3.862 18 C -0.213 4.213 19 C -0.081 4.081 20 C -0.168 4.168 21 C -0.082 4.082 22 C -0.154 4.154 23 H 0.263 0.737 24 H 0.041 0.959 25 H 0.000 1.000 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 -17.993 1.617 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.102 3.898 10 O -0.293 6.293 11 C 0.024 3.976 12 H 0.101 0.899 13 C -0.117 4.117 14 Cl -0.141 7.141 15 C -0.009 4.009 16 O -0.211 6.211 17 C 0.092 3.908 18 C -0.232 4.232 19 C -0.100 4.100 20 C -0.186 4.186 21 C -0.100 4.100 22 C -0.173 4.173 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.018 0.982 26 H 0.121 0.879 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.845 -17.615 1.375 18.948 hybrid contribution -0.085 0.835 0.242 0.873 sum 6.760 -16.780 1.617 18.163 Atomic orbital electron populations 1.69954 1.05989 1.27085 1.50604 1.24891 0.94931 0.99188 0.95302 0.86450 0.79356 0.82191 0.78801 1.20038 1.21202 1.20122 1.20989 0.93907 0.89424 1.50783 0.91829 1.20752 0.89067 0.82965 0.97003 1.88028 1.35092 1.11771 1.94436 1.22160 0.95385 0.87246 0.92853 0.89892 1.24926 0.95535 0.94463 0.96751 1.98729 1.63595 1.69167 1.82642 1.23048 0.83434 0.98187 0.96269 1.86201 1.26621 1.59080 1.49238 1.19136 0.89859 0.89504 0.92305 1.21306 1.02068 1.02155 0.97673 1.20926 0.93347 0.96647 0.99033 1.21012 0.97955 1.02658 0.96957 1.20950 0.98372 0.95111 0.95570 1.20502 0.92402 1.02243 1.02155 0.92719 0.94150 0.98216 0.87901 0.89437 0.91180 0.90529 0.85478 0.86043 0.86220 0.85589 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -15.18 9.43 -34.44 -0.32 -15.51 16 8 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.18 4.74 5.29 36.01 0.19 4.93 16 10 O -0.37 -8.77 9.92 -40.09 -0.40 -9.16 16 11 C 0.08 1.44 2.79 -26.73 -0.07 1.37 16 12 H 0.08 1.38 7.79 -51.92 -0.40 0.98 16 13 C -0.05 -0.84 6.05 37.16 0.22 -0.61 16 14 Cl -0.17 -3.16 26.09 -51.86 -1.35 -4.52 16 15 C 0.07 0.93 4.61 37.16 0.17 1.10 16 16 O -0.30 -4.67 9.32 -24.29 -0.23 -4.89 16 17 C 0.14 1.91 6.69 -39.22 -0.26 1.65 16 18 C -0.21 -2.54 9.04 -39.43 -0.36 -2.89 16 19 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 20 C -0.17 -1.65 10.04 -39.56 -0.40 -2.05 16 21 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 22 C -0.15 -1.94 9.99 -39.43 -0.39 -2.33 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.04 1.11 5.08 -51.93 -0.26 0.84 16 25 H 0.00 0.00 8.09 -51.93 -0.42 -0.42 16 26 H 0.10 1.67 7.73 -51.92 -0.40 1.27 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 29 H 0.08 1.08 7.65 -51.93 -0.40 0.68 16 30 H 0.13 1.32 6.30 -52.48 -0.33 0.99 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -32.59 305.76 -8.04 -40.63 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -4.28 Total: -2.32 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -2.11 Total: -15.25 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.62 Total: -14.06 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 17 Polarization: -3.16 SS G_CDS: -1.35 Total: -4.52 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.59 -8.04 -40.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.343 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds