Wall clock time and date at job start Mon Mar 30 2020 00:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99494 * 2 1 4 4 H 1.48503 * 109.46971 * 239.99798 * 3 2 1 5 5 H 1.48498 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46755 * 120.00011 * 3 2 1 7 7 C 1.37871 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99668 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00283 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47135 * 179.97438 * 9 7 2 11 11 C 1.42894 * 114.00081 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47393 * 330.00060 * 11 10 9 13 13 C 1.53003 * 109.47364 * 89.99491 * 11 10 9 14 14 Cl 1.80299 * 109.47328 * 295.00424 * 13 11 10 15 15 C 1.52998 * 109.47288 * 209.99810 * 11 10 9 16 16 O 1.42901 * 109.47046 * 294.99963 * 15 11 10 17 17 C 1.35905 * 116.99604 * 179.97438 * 16 15 11 18 18 C 1.38722 * 120.05728 * 359.72917 * 17 16 15 19 19 C 1.38150 * 119.94161 * 179.74227 * 18 17 16 20 20 C 1.38261 * 120.05672 * 0.50783 * 19 18 17 21 21 C 1.38268 * 120.10988 * 359.76619 * 20 19 18 22 22 C 1.38139 * 120.05525 * 359.97438 * 21 20 19 23 23 H 0.96994 * 120.00534 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47110 * 60.00129 * 9 7 2 25 25 H 1.08994 * 109.47061 * 299.99716 * 9 7 2 26 26 H 1.09010 * 109.46796 * 55.00344 * 13 11 10 27 27 H 1.08999 * 109.47053 * 174.99831 * 13 11 10 28 28 H 1.08996 * 109.47090 * 174.99747 * 15 11 10 29 29 H 1.08999 * 109.47084 * 54.99920 * 15 11 10 30 30 H 1.08006 * 120.03385 * 359.97438 * 18 17 16 31 31 H 1.08007 * 119.97088 * 180.27367 * 19 18 17 32 32 H 1.08001 * 119.94795 * 179.74501 * 20 19 18 33 33 H 1.07994 * 119.97151 * 179.97438 * 21 20 19 34 34 H 1.08005 * 120.02930 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5654 -4.8754 0.0000 12 1 0.6054 -4.8209 0.5135 13 6 1.3464 -5.3354 -1.4428 14 17 0.1609 -4.2420 -2.2489 15 6 2.4737 -5.8732 0.7212 16 8 3.6872 -6.0321 -0.0165 17 6 4.6102 -6.8904 0.4917 18 6 4.3556 -7.5614 1.6789 19 6 5.2934 -8.4373 2.1906 20 6 6.4892 -8.6376 1.5261 21 6 6.7477 -7.9657 0.3456 22 6 5.8110 -7.0928 -0.1730 23 1 -0.4850 0.8399 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.2936 -5.3049 -1.9815 27 1 0.9602 -6.3547 -1.4444 28 1 1.9671 -6.8352 0.7989 29 1 2.7017 -5.5009 1.7199 30 1 3.4235 -7.4020 2.2008 31 1 5.0938 -8.9633 3.1126 32 1 7.2227 -9.3197 1.9299 33 1 7.6826 -8.1235 -0.1713 34 1 6.0135 -6.5679 -1.0949 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205621664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:59 Heat of formation + Delta-G solvation = -92.564569 kcal Electronic energy + Delta-G solvation = -18007.268509 eV Core-core repulsion = 14930.563764 eV Total energy + Delta-G solvation = -3076.704746 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.09891 -39.27282 -37.98885 -36.73183 -34.97687 -32.98689 -31.85077 -30.52070 -29.11990 -27.66410 -24.59600 -23.71183 -23.26309 -21.84500 -19.33161 -18.62470 -17.77488 -17.10034 -16.93654 -16.69858 -16.28929 -15.95501 -15.73545 -15.12021 -14.69549 -14.38752 -14.29445 -14.05724 -13.64906 -13.51681 -13.09549 -12.87785 -12.68747 -12.48737 -12.33731 -12.24781 -11.95535 -11.86368 -11.71228 -11.34711 -11.07708 -10.80370 -9.91267 -9.85840 -9.12248 -8.27051 -6.36892 0.43373 0.54058 1.36153 1.38670 1.42994 1.50997 2.21040 2.35129 2.89141 3.02627 3.06463 3.57839 3.79318 3.96707 4.06110 4.08396 4.20080 4.31587 4.42715 4.44791 4.54356 4.60576 4.68312 4.80977 5.02675 5.12991 5.41550 5.43227 5.52024 5.57147 5.63657 5.91247 6.04077 6.47626 6.57237 6.85458 7.32266 8.84161 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.004548 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.502369 B = 6154.945491 C = 7058.451273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.190 3.810 10 O -0.395 6.395 11 C 0.071 3.929 12 H 0.089 0.911 13 C -0.043 4.043 14 Cl -0.197 7.197 15 C 0.073 3.927 16 O -0.325 6.325 17 C 0.108 3.892 18 C -0.222 4.222 19 C -0.085 4.085 20 C -0.165 4.165 21 C -0.083 4.083 22 C -0.176 4.176 23 H 0.269 0.731 24 H 0.036 0.964 25 H -0.022 1.022 26 H 0.096 0.904 27 H 0.132 0.868 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.114 -19.315 2.384 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.116 3.884 10 O -0.315 6.315 11 C 0.012 3.988 12 H 0.106 0.894 13 C -0.106 4.106 14 Cl -0.171 7.171 15 C -0.002 4.002 16 O -0.239 6.239 17 C 0.063 3.937 18 C -0.240 4.240 19 C -0.103 4.103 20 C -0.183 4.183 21 C -0.101 4.101 22 C -0.195 4.195 23 H 0.077 0.923 24 H 0.053 0.947 25 H -0.005 1.005 26 H 0.115 0.885 27 H 0.150 0.850 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.156 0.844 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.061 -18.967 2.145 20.720 hybrid contribution -0.388 1.077 0.045 1.146 sum 7.674 -17.890 2.190 19.589 Atomic orbital electron populations 1.70057 1.07466 1.28356 1.50705 1.25810 0.95880 1.02866 0.94279 0.85382 0.78246 0.77508 0.79180 1.19375 1.19937 1.19190 1.21355 0.93747 0.91389 1.51953 0.92850 1.20370 0.88862 0.83673 0.95522 1.87959 1.35290 1.13495 1.94725 1.22553 0.96454 0.85242 0.94513 0.89352 1.25046 0.94786 0.95680 0.95090 1.98727 1.64689 1.70521 1.83167 1.23003 0.83221 0.98925 0.95084 1.86136 1.27377 1.60300 1.50067 1.19411 0.90125 0.90465 0.93711 1.21525 1.03111 1.02280 0.97124 1.21321 0.93037 0.96037 0.99871 1.21436 0.98311 1.02248 0.96320 1.21289 0.98731 0.94178 0.95919 1.20711 0.92921 1.03336 1.02488 0.92263 0.94673 1.00476 0.88500 0.85031 0.87004 0.90940 0.84375 0.83347 0.83309 0.83132 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 2 C 0.01 0.60 5.46 84.65 0.46 1.06 16 3 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.55 -33.17 9.43 25.60 0.24 -32.93 16 8 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.19 10.59 5.29 71.24 0.38 10.97 16 10 O -0.39 -19.02 9.92 -144.34 -1.43 -20.45 16 11 C 0.07 2.46 2.79 30.59 0.09 2.54 16 12 H 0.09 2.94 7.79 -2.38 -0.02 2.92 16 13 C -0.04 -1.33 6.05 71.98 0.44 -0.90 16 14 Cl -0.20 -7.51 26.09 -2.72 -0.07 -7.58 16 15 C 0.07 1.98 4.61 71.98 0.33 2.31 16 16 O -0.32 -10.10 9.32 -87.84 -0.82 -10.92 16 17 C 0.11 2.92 6.69 22.50 0.15 3.07 16 18 C -0.22 -4.89 9.04 22.36 0.20 -4.69 16 19 C -0.08 -1.51 10.04 22.25 0.22 -1.28 16 20 C -0.17 -2.75 10.04 22.28 0.22 -2.53 16 21 C -0.08 -1.57 10.04 22.25 0.22 -1.35 16 22 C -0.18 -4.34 9.99 22.36 0.22 -4.12 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.04 2.00 5.08 -2.39 -0.01 1.99 16 25 H -0.02 -1.31 8.09 -2.39 -0.02 -1.33 16 26 H 0.10 3.13 7.73 -2.38 -0.02 3.11 16 27 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.11 2.08 7.68 -2.39 -0.02 2.06 16 29 H 0.07 2.01 7.65 -2.39 -0.02 1.99 16 30 H 0.14 2.60 6.30 -2.91 -0.02 2.58 16 31 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.13 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -71.77 305.76 4.26 -67.51 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.09 Total: 7.79 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 3.18 Total: -27.84 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.28 Total: -56.10 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -2.25 Total: -31.37 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 17 Polarization: -7.51 SS G_CDS: -0.07 Total: -7.58 kcal Total: -71.77 4.26 -67.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.055 kcal (2) G-P(sol) polarization free energy of solvation -71.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds