Wall clock time and date at job start Mon Mar 30 2020 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47583 * 2 1 4 4 O 1.42904 * 109.47301 * 239.99796 * 2 1 3 5 5 C 1.35925 * 117.00196 * 205.02681 * 4 2 1 6 6 C 1.38704 * 120.05833 * 354.50501 * 5 4 2 7 7 C 1.38152 * 119.95751 * 179.72296 * 6 5 4 8 8 C 1.38281 * 120.07571 * 0.55633 * 7 6 5 9 9 C 1.50696 * 119.94242 * 179.70154 * 8 7 6 10 10 O 1.42903 * 109.46716 * 270.02091 * 9 8 7 11 11 C 1.34936 * 116.99772 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.38636 * 119.99804 * 179.97438 * 11 10 9 14 14 N 1.31579 * 120.00232 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99865 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47085 * 59.99798 * 15 13 11 17 17 H 1.48500 * 109.47384 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47245 * 300.00181 * 15 13 11 19 19 C 1.38250 * 120.11804 * 359.72213 * 8 7 6 20 20 C 1.38262 * 120.03948 * 359.97438 * 19 8 7 21 21 Cl 1.73602 * 120.03407 * 179.97438 * 20 19 8 22 22 H 1.09006 * 109.46897 * 60.00112 * 1 2 3 23 23 H 1.08996 * 109.47000 * 300.00556 * 1 2 3 24 24 H 1.08988 * 109.47648 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46897 * 119.99888 * 2 1 3 26 26 H 1.08996 * 109.46993 * 299.99893 * 3 2 1 27 27 H 1.09002 * 109.46758 * 59.99916 * 3 2 1 28 28 H 1.08997 * 109.47389 * 179.97438 * 3 2 1 29 29 H 1.08006 * 120.02190 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.96354 * 180.25046 * 7 6 5 31 31 H 1.08999 * 109.47219 * 30.01404 * 9 8 7 32 32 H 1.08999 * 109.47080 * 150.02164 * 9 8 7 33 33 H 0.96996 * 120.00136 * 180.02562 * 14 13 11 34 34 H 1.07998 * 119.97835 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 3.2467 -1.2254 -1.0976 6 6 4.0350 -1.0239 0.0256 7 6 5.2931 -1.5904 0.0961 8 6 5.7718 -2.3484 -0.9567 9 6 7.1472 -2.9593 -0.8794 10 8 8.1056 -2.0441 -1.4143 11 6 9.3952 -2.4411 -1.4196 12 1 9.6628 -3.4123 -1.0304 13 6 10.3766 -1.6023 -1.9248 14 7 10.0505 -0.4193 -2.3995 15 14 12.1619 -2.1517 -1.9315 16 1 12.2960 -3.3892 -2.7412 17 1 13.0069 -1.0817 -2.5200 18 1 12.6022 -2.4212 -0.5390 19 6 4.9910 -2.5464 -2.0803 20 6 3.7287 -1.9870 -2.1533 21 17 2.7486 -2.2352 -3.5645 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 -1.0275 -0.0005 25 1 1.8933 -0.5138 0.8901 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 3.6640 -0.4280 0.8464 30 1 5.9055 -1.4369 0.9725 31 1 7.3914 -3.1742 0.1609 32 1 7.1669 -3.8842 -1.4559 33 1 10.7371 0.1675 -2.7532 34 1 5.3669 -3.1392 -2.9010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:07 Heat of formation + Delta-G solvation = -60.409262 kcal Electronic energy + Delta-G solvation = -17971.343711 eV Core-core repulsion = 14896.033324 eV Total energy + Delta-G solvation = -3075.310387 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24886 -37.98620 -36.34345 -35.77519 -33.35637 -31.84023 -30.64160 -30.09418 -27.48226 -25.59444 -23.98448 -23.20360 -21.57049 -20.49947 -18.31765 -17.56224 -16.18306 -15.78299 -15.52927 -15.08639 -14.54182 -14.27385 -13.99213 -13.85321 -13.44409 -13.12796 -12.92164 -12.50884 -12.45731 -12.28696 -12.04536 -11.57399 -11.36386 -11.19348 -11.01535 -10.92526 -10.73047 -10.70970 -10.49341 -10.18759 -9.59602 -9.25788 -8.61778 -7.98852 -7.86599 -5.95064 -3.60424 1.41755 1.53694 2.41318 3.12654 3.31608 3.33347 3.36822 3.82361 4.34553 4.58723 4.71942 4.83993 4.96285 5.09193 5.25160 5.32881 5.35514 5.47418 5.53852 5.57959 5.60024 5.73203 5.88085 5.89703 6.01762 6.17995 6.30865 6.35087 6.37753 6.57762 6.88029 6.99370 7.41555 7.45945 8.41723 9.47213 10.13583 11.25324 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.004165 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.758730 B = 6721.867717 C = 7203.274013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 C -0.182 4.182 4 O -0.302 6.302 5 C 0.132 3.868 6 C -0.204 4.204 7 C -0.056 4.056 8 C -0.087 4.087 9 C 0.111 3.889 10 O -0.288 6.288 11 C -0.366 4.366 12 H 0.063 0.937 13 C 0.025 3.975 14 N -0.886 5.886 15 Si 0.926 3.074 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.278 1.278 19 C -0.053 4.053 20 C -0.070 4.070 21 Cl -0.069 7.069 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.259 0.741 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.627 -0.608 5.668 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.020 3.980 3 C -0.239 4.239 4 O -0.216 6.216 5 C 0.086 3.914 6 C -0.222 4.222 7 C -0.074 4.074 8 C -0.088 4.088 9 C 0.033 3.967 10 O -0.203 6.203 11 C -0.445 4.445 12 H 0.081 0.919 13 C -0.174 4.174 14 N -0.529 5.529 15 Si 0.753 3.247 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.204 1.204 19 C -0.072 4.072 20 C -0.097 4.097 21 Cl -0.040 7.040 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.842 -0.293 5.236 18.597 hybrid contribution 1.014 -0.345 0.134 1.079 sum -16.828 -0.638 5.370 17.676 Atomic orbital electron populations 1.21834 0.92558 1.03079 1.02922 1.22439 0.95291 0.92767 0.87544 1.22400 1.02673 0.95866 1.03006 1.86175 1.28868 1.68061 1.38472 1.18545 0.85409 0.93838 0.93594 1.21152 0.96286 1.06398 0.98412 1.20992 0.94003 0.93627 0.98759 1.19792 0.96111 0.99385 0.93475 1.20939 0.85992 0.92394 0.97361 1.85742 1.14907 1.38819 1.80845 1.20779 0.81576 1.01392 1.40795 0.91888 1.24960 0.98484 0.95673 0.98236 1.70020 1.32813 1.08272 1.41779 0.86038 0.82620 0.77855 0.78195 1.20327 1.20857 1.20354 1.20859 0.90464 0.97897 0.97979 1.20078 0.94417 1.05587 0.89667 1.98331 1.70441 1.95876 1.39376 0.91466 0.90651 0.91700 0.90842 0.91377 0.91131 0.91426 0.84764 0.85083 0.94743 0.94783 0.93115 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.56 37.16 0.36 -0.82 16 2 C 0.08 0.78 2.84 -26.73 -0.08 0.70 16 3 C -0.18 -1.75 9.17 37.16 0.34 -1.41 16 4 O -0.30 -4.23 9.26 -19.50 -0.18 -4.41 16 5 C 0.13 2.07 6.59 -39.20 -0.26 1.81 16 6 C -0.20 -3.00 8.25 -39.44 -0.33 -3.32 16 7 C -0.06 -0.93 9.69 -39.60 -0.38 -1.32 16 8 C -0.09 -1.67 5.51 -104.60 -0.58 -2.24 16 9 C 0.11 2.42 6.14 36.00 0.22 2.64 16 10 O -0.29 -8.26 9.76 -16.53 -0.16 -8.42 16 11 C -0.37 -10.74 9.89 30.88 0.31 -10.43 16 12 H 0.06 1.71 7.77 -52.49 -0.41 1.31 16 13 C 0.03 0.74 5.49 -17.51 -0.10 0.64 16 14 N -0.89 -27.95 13.67 55.48 0.76 -27.19 16 15 Si 0.93 21.99 29.55 -169.99 -5.02 16.97 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 C -0.05 -0.96 9.48 -39.57 -0.38 -1.34 16 20 C -0.07 -1.19 6.33 -39.36 -0.25 -1.44 16 21 Cl -0.07 -1.07 28.50 -51.86 -1.48 -2.55 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.52 8.14 -51.94 -0.42 0.10 16 25 H 0.07 0.69 6.31 -51.93 -0.33 0.36 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.75 6.92 -51.93 -0.36 0.39 16 29 H 0.13 1.58 5.43 -52.48 -0.28 1.29 16 30 H 0.13 2.02 8.06 -52.48 -0.42 1.60 16 31 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 308.76 15.07 4.65 4.65 Total: -1.00 -33.40 308.76 -6.86 -40.27 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.31 Total: -2.80 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -1.12 Total: -16.52 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.76 Total: -27.19 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.34 Total: -12.83 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.48 Total: -2.55 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.40 -6.86 -40.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.144 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds