Wall clock time and date at job start Mon Mar 30 2020 01:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47583 * 2 1 4 4 O 1.42904 * 109.47301 * 239.99796 * 2 1 3 5 5 C 1.35925 * 117.00196 * 205.02681 * 4 2 1 6 6 C 1.38704 * 120.05833 * 354.50501 * 5 4 2 7 7 C 1.38152 * 119.95751 * 179.72296 * 6 5 4 8 8 C 1.38281 * 120.07571 * 0.55633 * 7 6 5 9 9 C 1.50696 * 119.94242 * 179.70154 * 8 7 6 10 10 O 1.42903 * 109.46716 * 270.02091 * 9 8 7 11 11 C 1.34936 * 116.99772 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.38636 * 119.99804 * 179.97438 * 11 10 9 14 14 N 1.31579 * 120.00232 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99865 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47085 * 59.99798 * 15 13 11 17 17 H 1.48500 * 109.47384 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47245 * 300.00181 * 15 13 11 19 19 C 1.38250 * 120.11804 * 359.72213 * 8 7 6 20 20 C 1.38262 * 120.03948 * 359.97438 * 19 8 7 21 21 Cl 1.73602 * 120.03407 * 179.97438 * 20 19 8 22 22 H 1.09006 * 109.46897 * 60.00112 * 1 2 3 23 23 H 1.08996 * 109.47000 * 300.00556 * 1 2 3 24 24 H 1.08988 * 109.47648 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46897 * 119.99888 * 2 1 3 26 26 H 1.08996 * 109.46993 * 299.99893 * 3 2 1 27 27 H 1.09002 * 109.46758 * 59.99916 * 3 2 1 28 28 H 1.08997 * 109.47389 * 179.97438 * 3 2 1 29 29 H 1.08006 * 120.02190 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.96354 * 180.25046 * 7 6 5 31 31 H 1.08999 * 109.47219 * 30.01404 * 9 8 7 32 32 H 1.08999 * 109.47080 * 150.02164 * 9 8 7 33 33 H 0.96996 * 120.00136 * 180.02562 * 14 13 11 34 34 H 1.07998 * 119.97835 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 3.2467 -1.2254 -1.0976 6 6 4.0350 -1.0239 0.0256 7 6 5.2931 -1.5904 0.0961 8 6 5.7718 -2.3484 -0.9567 9 6 7.1472 -2.9593 -0.8794 10 8 8.1056 -2.0441 -1.4143 11 6 9.3952 -2.4411 -1.4196 12 1 9.6628 -3.4123 -1.0304 13 6 10.3766 -1.6023 -1.9248 14 7 10.0505 -0.4193 -2.3995 15 14 12.1619 -2.1517 -1.9315 16 1 12.2960 -3.3892 -2.7412 17 1 13.0069 -1.0817 -2.5200 18 1 12.6022 -2.4212 -0.5390 19 6 4.9910 -2.5464 -2.0803 20 6 3.7287 -1.9870 -2.1533 21 17 2.7486 -2.2352 -3.5645 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 -1.0275 -0.0005 25 1 1.8933 -0.5138 0.8901 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 3.6640 -0.4280 0.8464 30 1 5.9055 -1.4369 0.9725 31 1 7.3914 -3.1742 0.1609 32 1 7.1669 -3.8842 -1.4559 33 1 10.7371 0.1675 -2.7532 34 1 5.3669 -3.1392 -2.9010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224379906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:06 Heat of formation + Delta-G solvation = -80.667428 kcal Electronic energy + Delta-G solvation = -17972.222171 eV Core-core repulsion = 14896.033324 eV Total energy + Delta-G solvation = -3076.188847 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.41541 -39.30012 -37.97896 -37.30473 -34.34050 -33.85546 -31.98184 -31.53236 -28.20133 -27.34498 -25.90183 -24.41002 -22.82140 -21.61961 -19.70383 -19.40780 -17.55150 -17.37794 -16.77387 -16.51650 -15.88008 -15.77249 -15.44673 -15.25641 -14.76908 -14.53059 -14.19344 -13.80572 -13.50863 -13.32278 -13.18697 -12.91136 -12.77986 -12.60476 -12.44561 -12.37329 -12.09554 -11.85119 -11.76713 -11.62208 -11.49917 -11.25127 -10.16064 -9.91632 -9.16810 -8.16109 -5.87333 0.10856 0.20481 1.12869 1.41453 1.49234 1.56282 2.10423 2.31364 2.54767 3.16409 3.66298 3.73022 3.82086 3.94265 4.05693 4.16120 4.21978 4.28126 4.41797 4.50615 4.70199 4.71181 4.81151 4.81912 4.87444 4.89800 4.98411 5.12919 5.24983 5.25550 5.30903 5.54942 5.59986 6.21031 6.32284 7.25828 8.04453 9.07937 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.004165 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.758730 B = 6721.867717 C = 7203.274013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 C -0.181 4.181 4 O -0.311 6.311 5 C 0.139 3.861 6 C -0.193 4.193 7 C -0.059 4.059 8 C -0.116 4.116 9 C 0.109 3.891 10 O -0.330 6.330 11 C -0.382 4.382 12 H 0.077 0.923 13 C -0.041 4.041 14 N -0.939 5.939 15 Si 1.006 2.994 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.261 1.261 19 C -0.063 4.063 20 C -0.085 4.085 21 Cl -0.061 7.061 22 H 0.062 0.938 23 H 0.102 0.898 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.168 0.832 30 H 0.143 0.857 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.260 0.740 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.286 -0.584 7.036 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.008 3.992 3 C -0.238 4.238 4 O -0.225 6.225 5 C 0.093 3.907 6 C -0.211 4.211 7 C -0.077 4.077 8 C -0.117 4.117 9 C 0.032 3.968 10 O -0.247 6.247 11 C -0.461 4.461 12 H 0.094 0.906 13 C -0.234 4.234 14 N -0.584 5.584 15 Si 0.828 3.172 16 H -0.189 1.189 17 H -0.206 1.206 18 H -0.186 1.186 19 C -0.082 4.082 20 C -0.112 4.112 21 Cl -0.032 7.032 22 H 0.081 0.919 23 H 0.121 0.879 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.186 0.814 30 H 0.160 0.840 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.536 -0.292 6.621 19.686 hybrid contribution 1.004 -0.333 -0.254 1.087 sum -17.533 -0.624 6.368 18.664 Atomic orbital electron populations 1.21864 0.90663 1.03383 1.04081 1.22858 0.96772 0.92847 0.86682 1.22406 1.01581 0.95642 1.04146 1.86195 1.27774 1.67916 1.40658 1.18660 0.86134 0.92797 0.93151 1.21427 0.95154 1.05611 0.98955 1.21174 0.94983 0.93072 0.98461 1.19688 0.95114 1.01691 0.95171 1.21117 0.86133 0.91929 0.97604 1.85668 1.15571 1.41617 1.81800 1.21349 0.82331 1.01986 1.40423 0.90569 1.26248 1.03927 0.95622 0.97583 1.70206 1.34721 1.10003 1.43424 0.84816 0.75580 0.77703 0.79083 1.18892 1.20573 1.18611 1.20843 0.91187 0.98426 0.97730 1.20163 0.94319 1.06122 0.90600 1.98324 1.70010 1.95876 1.38985 0.91882 0.87919 0.91841 0.89490 0.92000 0.88325 0.93039 0.81445 0.83964 0.93521 0.94344 0.93094 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.56 71.98 0.69 -1.19 16 2 C 0.06 1.14 2.84 30.59 0.09 1.22 16 3 C -0.18 -3.02 9.17 71.98 0.66 -2.36 16 4 O -0.31 -8.21 9.26 -92.70 -0.86 -9.06 16 5 C 0.14 4.20 6.59 22.52 0.15 4.35 16 6 C -0.19 -5.36 8.25 22.36 0.18 -5.18 16 7 C -0.06 -1.94 9.69 22.26 0.22 -1.72 16 8 C -0.12 -4.51 5.51 -19.85 -0.11 -4.62 16 9 C 0.11 4.86 6.14 71.23 0.44 5.30 16 10 O -0.33 -19.48 9.76 -82.06 -0.80 -20.28 16 11 C -0.38 -22.70 9.89 67.92 0.67 -22.03 16 12 H 0.08 4.14 7.77 -2.91 -0.02 4.12 16 13 C -0.04 -2.41 5.49 84.83 0.47 -1.94 16 14 N -0.94 -60.53 13.67 21.61 0.30 -60.24 16 15 Si 1.01 45.08 29.55 68.60 2.03 47.10 16 16 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 C -0.06 -2.33 9.48 22.28 0.21 -2.12 16 20 C -0.08 -2.85 6.33 22.41 0.14 -2.71 16 21 Cl -0.06 -1.87 28.50 -2.72 -0.08 -1.94 16 22 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 23 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 25 H 0.09 1.34 6.31 -2.38 -0.02 1.32 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 1.03 6.92 -2.39 -0.02 1.02 16 29 H 0.17 3.44 5.43 -2.91 -0.02 3.42 16 30 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 32 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 33 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -73.10 308.76 5.49 -67.62 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.10 Total: 9.80 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 3.80 Total: -33.00 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.30 Total: -60.24 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.66 Total: -29.35 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.94 kcal Total: -73.10 5.49 -67.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.050 kcal (2) G-P(sol) polarization free energy of solvation -73.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds