Wall clock time and date at job start Mon Mar 30 2020 01:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42899 * 109.47120 * 2 1 4 4 C 1.35985 * 116.99860 * 180.02562 * 3 2 1 5 5 C 1.38699 * 119.99649 * 180.02562 * 4 3 2 6 6 C 1.38136 * 119.99504 * 180.29980 * 5 4 3 7 7 C 1.38699 * 120.00019 * 359.44266 * 6 5 4 8 8 O 1.35980 * 119.99689 * 180.30000 * 7 6 5 9 9 C 1.42906 * 116.99927 * 176.75198 * 8 7 6 10 10 H 1.09001 * 109.46665 * 27.01302 * 9 8 7 11 11 C 1.50694 * 109.47209 * 147.01467 * 9 8 7 12 12 H 1.08006 * 120.00399 * 359.97438 * 11 9 8 13 13 C 1.37882 * 119.99888 * 180.02562 * 11 9 8 14 14 N 1.31507 * 119.99974 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99915 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46947 * 90.00427 * 15 13 11 17 17 H 1.48505 * 109.47355 * 210.00147 * 15 13 11 18 18 H 1.48502 * 109.47496 * 330.00139 * 15 13 11 19 19 C 1.53004 * 109.47125 * 267.01387 * 9 8 7 20 20 Cl 1.80303 * 109.46761 * 64.99713 * 19 9 8 21 21 C 1.38694 * 119.99890 * 0.55721 * 7 6 5 22 22 C 1.38128 * 120.00253 * 359.71879 * 21 7 6 23 23 H 1.09001 * 109.47754 * 59.99443 * 1 2 3 24 24 H 1.08998 * 109.47344 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47072 * 299.99642 * 1 2 3 26 26 H 1.09009 * 109.46853 * 240.00608 * 2 1 3 27 27 H 1.09001 * 109.47754 * 120.00556 * 2 1 3 28 28 H 1.07992 * 120.00619 * 0.02562 * 5 4 3 29 29 H 1.08000 * 119.99895 * 179.70418 * 6 5 4 30 30 H 0.97008 * 120.00299 * 179.97438 * 14 13 11 31 31 H 1.08996 * 109.47244 * 184.99605 * 19 9 8 32 32 H 1.08994 * 109.46819 * 304.99966 * 19 9 8 33 33 H 1.08001 * 119.99969 * 179.70074 * 21 7 6 34 34 H 1.08002 * 120.00103 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 3.8845 2.8071 0.0000 6 6 5.2539 2.9880 -0.0068 7 6 6.0988 1.8881 -0.0025 8 8 7.4469 2.0663 -0.0030 9 6 8.2567 0.8913 0.0737 10 1 7.7116 0.0464 -0.3472 11 6 9.5290 1.1064 -0.7045 12 1 9.7020 2.0462 -1.2079 13 6 10.4721 0.1030 -0.7749 14 7 10.2609 -1.0419 -0.1633 15 14 12.0490 0.3694 -1.7402 16 1 13.0866 0.9416 -0.8451 17 1 12.5237 -0.9296 -2.2812 18 1 11.7905 1.3078 -2.8617 19 6 8.5967 0.6010 1.5370 20 17 7.0866 0.1993 2.4365 21 6 5.5687 0.6065 -0.0030 22 6 4.1993 0.4255 -0.0020 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.2267 3.6636 0.0012 29 1 5.6667 3.9860 -0.0113 30 1 10.9242 -1.7480 -0.2131 31 1 9.2860 -0.2417 1.5895 32 1 9.0625 1.4797 1.9829 33 1 6.2265 -0.2500 -0.0045 34 1 3.7865 -0.5726 -0.0028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225256090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:01 Heat of formation + Delta-G solvation = -68.588968 kcal Electronic energy + Delta-G solvation = -18365.124981 eV Core-core repulsion = 15289.459895 eV Total energy + Delta-G solvation = -3075.665086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.86792 -38.47326 -36.04674 -34.78362 -33.40732 -31.69732 -30.63761 -29.53754 -27.77770 -25.33767 -23.92001 -22.73537 -21.21352 -20.42086 -18.10203 -17.04537 -16.82976 -15.93224 -15.56843 -14.80648 -14.49620 -14.25225 -13.75104 -13.34164 -13.27642 -13.09295 -12.75800 -12.55627 -12.08135 -11.98129 -11.88165 -11.57007 -11.29257 -11.14872 -11.01537 -10.82703 -10.53344 -10.24791 -10.14957 -9.58024 -9.36827 -9.03852 -8.67298 -8.49591 -6.99407 -6.44493 -4.51830 1.79713 2.07292 3.12071 3.20089 3.24094 3.40394 3.46333 4.05489 4.30396 4.48640 4.90960 4.92138 4.97361 5.20570 5.28828 5.37451 5.47865 5.73096 5.78131 5.84583 5.96649 5.98854 6.20445 6.28007 6.39753 6.54877 6.73332 6.85558 6.98864 7.08237 7.21702 7.53890 7.76252 7.76756 8.36532 8.69332 9.16197 10.62628 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.004759 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.577593 B = 5881.844452 C = 6062.115047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.069 3.931 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.125 3.875 8 O -0.312 6.312 9 C 0.205 3.795 10 H 0.050 0.950 11 C -0.521 4.521 12 H 0.076 0.924 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.916 3.084 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.035 4.035 20 Cl -0.241 7.241 21 C -0.153 4.153 22 C -0.168 4.168 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.272 0.728 31 H 0.133 0.867 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 1.047 0.937 11.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.239 6.239 4 C 0.025 3.975 5 C -0.137 4.137 6 C -0.151 4.151 7 C 0.078 3.922 8 O -0.226 6.226 9 C 0.150 3.850 10 H 0.067 0.933 11 C -0.559 4.559 12 H 0.095 0.905 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.743 3.257 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.098 4.098 20 Cl -0.215 7.215 21 C -0.172 4.172 22 C -0.187 4.187 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.591 1.142 1.024 11.692 hybrid contribution 0.914 -0.569 -0.260 1.108 sum -10.676 0.573 0.764 10.719 Atomic orbital electron populations 1.21753 0.93288 1.02457 1.03209 1.22650 0.95291 0.82849 1.01198 1.85994 1.19544 1.28296 1.90017 1.18721 0.81724 0.94118 1.02939 1.20015 0.94020 0.94464 1.05191 1.20162 0.91247 0.97864 1.05807 1.19015 0.84790 0.92930 0.95431 1.86139 1.12454 1.37194 1.86798 1.20493 0.90124 0.83373 0.90975 0.93254 1.21040 1.01204 1.01990 1.31638 0.90543 1.24982 0.99077 0.94435 0.95474 1.69796 1.35966 1.04561 1.42382 0.86178 0.81649 0.77892 0.80019 1.20152 1.20781 1.19373 1.25770 0.85719 1.04586 0.93728 1.98643 1.46689 1.95697 1.80515 1.21321 0.95118 0.97624 1.03128 1.20933 0.93693 0.97484 1.06561 0.91729 0.90739 0.91748 0.92404 0.92420 0.85573 0.85228 0.91829 0.84959 0.90739 0.84294 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.15 0.38 -0.95 16 2 C 0.06 0.65 5.46 37.15 0.20 0.86 16 3 O -0.32 -4.91 10.14 -19.69 -0.20 -5.11 16 4 C 0.07 1.16 6.69 -39.24 -0.26 0.90 16 5 C -0.12 -1.95 9.98 -39.45 -0.39 -2.35 16 6 C -0.13 -2.38 9.98 -39.45 -0.39 -2.78 16 7 C 0.13 2.60 5.96 -39.24 -0.23 2.36 16 8 O -0.31 -7.28 9.73 -19.68 -0.19 -7.47 16 9 C 0.21 4.99 2.19 -27.88 -0.06 4.93 16 10 H 0.05 1.26 5.39 -51.93 -0.28 0.98 16 11 C -0.52 -13.54 8.89 -34.44 -0.31 -13.85 16 12 H 0.08 2.00 7.81 -52.48 -0.41 1.59 16 13 C 0.06 1.61 5.29 -17.82 -0.09 1.51 16 14 N -0.89 -23.00 11.30 55.43 0.63 -22.37 16 15 Si 0.92 19.79 29.54 -169.99 -5.02 14.77 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 C -0.04 -0.81 6.17 37.16 0.23 -0.58 16 20 Cl -0.24 -5.02 25.61 -51.86 -1.33 -6.35 16 21 C -0.15 -3.04 7.04 -39.45 -0.28 -3.32 16 22 C -0.17 -2.92 9.03 -39.45 -0.36 -3.28 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.65 7.66 -51.92 -0.40 0.25 16 27 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 28 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.13 2.11 8.06 -52.49 -0.42 1.68 16 30 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.13 3.22 5.96 -51.93 -0.31 2.91 16 32 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.14 2.94 5.11 -52.49 -0.27 2.67 16 34 H 0.12 1.81 6.29 -52.49 -0.33 1.48 16 LS Contribution 297.47 15.07 4.48 4.48 Total: -1.00 -26.75 297.47 -7.26 -34.01 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.06 Total: 4.58 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.56 Total: -16.55 kcal Atomic # 7 Polarization: -23.00 SS G_CDS: 0.63 Total: -22.37 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.39 Total: -12.58 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 17 Polarization: -5.02 SS G_CDS: -1.33 Total: -6.35 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.75 -7.26 -34.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225256090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.581 kcal (2) G-P(sol) polarization free energy of solvation -26.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds