Wall clock time and date at job start Mon Mar 30 2020 01:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42899 * 109.47120 * 2 1 4 4 C 1.35985 * 116.99860 * 180.02562 * 3 2 1 5 5 C 1.38699 * 119.99649 * 180.02562 * 4 3 2 6 6 C 1.38136 * 119.99504 * 180.29980 * 5 4 3 7 7 C 1.38699 * 120.00019 * 359.44266 * 6 5 4 8 8 O 1.35980 * 119.99689 * 180.30000 * 7 6 5 9 9 C 1.42906 * 116.99927 * 176.75198 * 8 7 6 10 10 H 1.09001 * 109.46665 * 27.01302 * 9 8 7 11 11 C 1.50694 * 109.47209 * 147.01467 * 9 8 7 12 12 H 1.08006 * 120.00399 * 359.97438 * 11 9 8 13 13 C 1.37882 * 119.99888 * 180.02562 * 11 9 8 14 14 N 1.31507 * 119.99974 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99915 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46947 * 90.00427 * 15 13 11 17 17 H 1.48505 * 109.47355 * 210.00147 * 15 13 11 18 18 H 1.48502 * 109.47496 * 330.00139 * 15 13 11 19 19 C 1.53004 * 109.47125 * 267.01387 * 9 8 7 20 20 Cl 1.80303 * 109.46761 * 64.99713 * 19 9 8 21 21 C 1.38694 * 119.99890 * 0.55721 * 7 6 5 22 22 C 1.38128 * 120.00253 * 359.71879 * 21 7 6 23 23 H 1.09001 * 109.47754 * 59.99443 * 1 2 3 24 24 H 1.08998 * 109.47344 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47072 * 299.99642 * 1 2 3 26 26 H 1.09009 * 109.46853 * 240.00608 * 2 1 3 27 27 H 1.09001 * 109.47754 * 120.00556 * 2 1 3 28 28 H 1.07992 * 120.00619 * 0.02562 * 5 4 3 29 29 H 1.08000 * 119.99895 * 179.70418 * 6 5 4 30 30 H 0.97008 * 120.00299 * 179.97438 * 14 13 11 31 31 H 1.08996 * 109.47244 * 184.99605 * 19 9 8 32 32 H 1.08994 * 109.46819 * 304.99966 * 19 9 8 33 33 H 1.08001 * 119.99969 * 179.70074 * 21 7 6 34 34 H 1.08002 * 120.00103 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 3.8845 2.8071 0.0000 6 6 5.2539 2.9880 -0.0068 7 6 6.0988 1.8881 -0.0025 8 8 7.4469 2.0663 -0.0030 9 6 8.2567 0.8913 0.0737 10 1 7.7116 0.0464 -0.3472 11 6 9.5290 1.1064 -0.7045 12 1 9.7020 2.0462 -1.2079 13 6 10.4721 0.1030 -0.7749 14 7 10.2609 -1.0419 -0.1633 15 14 12.0490 0.3694 -1.7402 16 1 13.0866 0.9416 -0.8451 17 1 12.5237 -0.9296 -2.2812 18 1 11.7905 1.3078 -2.8617 19 6 8.5967 0.6010 1.5370 20 17 7.0866 0.1993 2.4365 21 6 5.5687 0.6065 -0.0030 22 6 4.1993 0.4255 -0.0020 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.2267 3.6636 0.0012 29 1 5.6667 3.9860 -0.0113 30 1 10.9242 -1.7480 -0.2131 31 1 9.2860 -0.2417 1.5895 32 1 9.0625 1.4797 1.9829 33 1 6.2265 -0.2500 -0.0045 34 1 3.7865 -0.5726 -0.0028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225256090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:00 Heat of formation + Delta-G solvation = -82.265496 kcal Electronic energy + Delta-G solvation = -18365.718039 eV Core-core repulsion = 15289.459895 eV Total energy + Delta-G solvation = -3076.258144 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.26491 -39.93018 -37.51528 -36.51301 -35.28681 -32.66797 -32.11129 -31.22994 -29.22213 -27.27331 -25.07081 -24.25126 -22.46137 -22.05084 -19.50708 -18.71495 -18.50033 -17.16775 -16.97134 -16.47977 -16.11337 -15.77149 -15.31568 -14.78597 -14.63718 -14.27864 -14.18785 -13.84050 -13.75572 -13.31384 -13.17257 -13.04899 -12.89918 -12.71245 -12.48079 -12.30652 -12.10938 -11.74322 -11.56688 -11.34124 -11.11945 -10.73568 -10.54033 -9.91060 -8.48990 -8.36220 -6.52795 0.38920 0.63213 1.40395 1.43668 1.54536 1.61123 2.27766 2.35716 2.76760 2.89561 2.98711 3.88591 3.92650 4.08400 4.21878 4.26499 4.33062 4.39614 4.43844 4.53829 4.56650 4.81808 4.92927 4.97528 5.01063 5.19449 5.22592 5.25432 5.43014 5.51326 5.60804 5.73440 5.86940 6.44397 6.55547 6.88070 7.20441 8.69484 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.004759 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.577593 B = 5881.844452 C = 6062.115047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 O -0.328 6.328 4 C 0.076 3.924 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.089 3.911 8 O -0.329 6.329 9 C 0.212 3.788 10 H 0.031 0.969 11 C -0.549 4.549 12 H 0.066 0.934 13 C 0.027 3.973 14 N -0.910 5.910 15 Si 0.978 3.022 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.269 1.269 19 C -0.026 4.026 20 Cl -0.222 7.222 21 C -0.164 4.164 22 C -0.171 4.171 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.156 0.844 29 H 0.145 0.855 30 H 0.276 0.724 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.861 1.280 0.822 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 O -0.243 6.243 4 C 0.032 3.968 5 C -0.133 4.133 6 C -0.148 4.148 7 C 0.044 3.956 8 O -0.244 6.244 9 C 0.156 3.844 10 H 0.048 0.952 11 C -0.586 4.586 12 H 0.084 0.916 13 C -0.174 4.174 14 N -0.547 5.547 15 Si 0.801 3.199 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.194 1.194 19 C -0.089 4.089 20 Cl -0.196 7.196 21 C -0.183 4.183 22 C -0.189 4.189 23 H 0.085 0.915 24 H 0.116 0.884 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.174 0.826 29 H 0.163 0.837 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.931 1.370 0.918 13.036 hybrid contribution 1.105 -0.667 -0.203 1.306 sum -11.826 0.703 0.716 11.869 Atomic orbital electron populations 1.21776 0.90949 1.04090 1.03346 1.23003 0.97181 0.81305 1.01658 1.86015 1.18179 1.30555 1.89529 1.18873 0.82621 0.94052 1.01297 1.20348 0.93674 0.95525 1.03795 1.20415 0.91696 0.97855 1.04860 1.19342 0.83937 0.94263 0.98075 1.86072 1.13948 1.36576 1.87818 1.20239 0.89580 0.83239 0.91327 0.95177 1.21267 1.02541 1.02045 1.32792 0.91565 1.25720 1.01680 0.93981 0.96042 1.69882 1.36899 1.05064 1.42845 0.85242 0.78032 0.77908 0.78699 1.19334 1.20107 1.19389 1.25425 0.86182 1.03806 0.93481 1.98634 1.45489 1.95601 1.79923 1.21197 0.95954 0.96707 1.04411 1.21106 0.92739 0.98942 1.06158 0.91535 0.88377 0.91664 0.91821 0.92084 0.82600 0.83700 0.91479 0.86516 0.90676 0.86299 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.04 0.91 5.46 71.98 0.39 1.30 16 3 O -0.33 -9.12 10.14 -93.38 -0.95 -10.07 16 4 C 0.08 2.42 6.69 22.49 0.15 2.57 16 5 C -0.12 -3.55 9.98 22.36 0.22 -3.33 16 6 C -0.13 -4.55 9.98 22.36 0.22 -4.33 16 7 C 0.09 3.74 5.96 22.49 0.13 3.88 16 8 O -0.33 -15.78 9.73 -93.33 -0.91 -16.69 16 9 C 0.21 10.63 2.19 29.85 0.07 10.69 16 10 H 0.03 1.63 5.39 -2.39 -0.01 1.62 16 11 C -0.55 -29.29 8.89 25.60 0.23 -29.06 16 12 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 13 C 0.03 1.38 5.29 84.66 0.45 1.83 16 14 N -0.91 -47.63 11.30 21.45 0.24 -47.39 16 15 Si 0.98 40.58 29.54 68.60 2.03 42.60 16 16 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 17 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 19 C -0.03 -1.22 6.17 71.98 0.44 -0.77 16 20 Cl -0.22 -9.31 25.61 -2.72 -0.07 -9.38 16 21 C -0.16 -6.58 7.04 22.35 0.16 -6.43 16 22 C -0.17 -5.78 9.03 22.35 0.20 -5.58 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.27 7.66 -2.38 -0.02 1.25 16 27 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 28 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 29 H 0.15 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.28 13.56 8.31 -92.70 -0.77 12.79 16 31 H 0.12 5.84 5.96 -2.39 -0.01 5.83 16 32 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 33 H 0.12 5.22 5.11 -2.91 -0.01 5.21 16 34 H 0.14 4.03 6.29 -2.91 -0.02 4.01 16 Total: -1.00 -57.13 297.47 4.86 -52.27 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.11 Total: 19.30 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 3.41 Total: -30.65 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.24 Total: -47.39 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -1.85 Total: -26.76 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 17 Polarization: -9.31 SS G_CDS: -0.07 Total: -9.38 kcal Total: -57.13 4.86 -52.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225256090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.991 kcal (2) G-P(sol) polarization free energy of solvation -57.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds