Wall clock time and date at job start Mon Mar 30 2020 00:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35995 * 116.99899 * 2 1 4 4 C 1.38573 * 120.07588 * 0.02562 * 3 2 1 5 5 C 1.38240 * 119.99798 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14940 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.92478 * 180.27710 * 6 5 4 8 8 C 1.38242 * 120.14748 * 0.02562 * 6 5 4 9 9 C 1.38559 * 119.99715 * 359.97438 * 8 6 5 10 10 O 1.35993 * 120.07178 * 180.02562 * 9 8 6 11 11 C 1.42897 * 116.99956 * 356.72899 * 10 9 8 12 12 H 1.09000 * 109.46985 * 26.85158 * 11 10 9 13 13 C 1.50701 * 109.47277 * 146.85115 * 11 10 9 14 14 H 1.07998 * 120.00109 * 0.02562 * 13 11 10 15 15 C 1.37882 * 120.00345 * 180.02562 * 13 11 10 16 16 N 1.31518 * 119.99401 * 359.97438 * 15 13 11 17 17 Si 1.86790 * 120.00236 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47308 * 90.00047 * 17 15 13 19 19 H 1.48494 * 109.47408 * 210.00339 * 17 15 13 20 20 H 1.48506 * 109.47134 * 330.00409 * 17 15 13 21 21 C 1.53000 * 109.47313 * 266.85010 * 11 10 9 22 22 Cl 1.80300 * 109.47135 * 64.99854 * 21 11 10 23 23 H 1.09002 * 109.46813 * 300.00623 * 1 2 3 24 24 H 1.08998 * 109.46779 * 60.00159 * 1 2 3 25 25 H 1.08990 * 109.46968 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99762 * 359.96061 * 4 3 2 27 27 H 1.07999 * 119.92223 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47538 * 269.72904 * 7 6 5 29 29 H 1.08996 * 109.47258 * 29.73083 * 7 6 5 30 30 H 1.08996 * 109.46781 * 149.72963 * 7 6 5 31 31 H 1.07998 * 119.99778 * 180.02562 * 8 6 5 32 32 H 0.96995 * 119.99205 * 179.97438 * 16 15 13 33 33 H 1.08998 * 109.47522 * 185.00237 * 21 11 10 34 34 H 1.09003 * 109.47532 * 305.00039 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3749 0.0005 5 6 1.9225 3.6058 0.0011 6 6 3.3030 3.6799 0.0016 7 6 3.9837 5.0244 0.0085 8 6 4.0603 2.5234 0.0011 9 6 3.4360 1.2864 0.0005 10 8 4.1795 0.1478 0.0005 11 6 5.5986 0.2996 -0.0715 12 1 5.8827 1.2639 0.3500 13 6 6.2624 -0.8052 0.7094 14 1 5.6608 -1.5492 1.2103 15 6 7.6378 -0.8662 0.7844 16 7 8.3704 0.0395 0.1740 17 14 8.4605 -2.2360 1.7518 18 1 8.7061 -3.3955 0.8570 19 1 9.7530 -1.7495 2.2974 20 1 7.5765 -2.6524 2.8700 21 6 6.0454 0.2305 -1.5332 22 17 5.3687 1.6371 -2.4357 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.2147 2.3197 0.0003 27 1 1.3342 4.5115 0.0019 28 1 4.1523 5.3516 -1.0174 29 1 3.3516 5.7490 0.5217 30 1 4.9395 4.9449 0.5262 31 1 5.1386 2.5841 0.0019 32 1 9.3380 -0.0032 0.2272 33 1 7.1339 0.2571 -1.5821 34 1 5.6842 -0.6957 -1.9802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225323635.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:52 Heat of formation + Delta-G solvation = -81.838761 kcal Electronic energy + Delta-G solvation = -18894.526942 eV Core-core repulsion = 15818.287303 eV Total energy + Delta-G solvation = -3076.239640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37763 -39.43593 -38.08313 -36.58176 -35.36847 -32.77240 -31.63443 -30.53501 -28.63978 -27.28736 -26.70076 -24.38866 -22.23718 -22.05008 -19.44836 -18.66784 -17.91306 -17.34187 -16.74368 -16.53129 -15.87600 -15.56501 -15.40377 -15.08075 -14.51971 -14.50097 -14.31176 -13.85371 -13.65092 -13.16576 -13.03155 -12.93812 -12.75783 -12.62855 -12.36417 -12.30852 -11.99461 -11.85355 -11.68662 -11.42260 -11.18080 -10.93848 -10.57761 -9.35292 -8.51597 -8.37147 -6.53498 0.46804 0.61941 1.38850 1.41607 1.52981 1.60052 2.27767 2.52676 2.73330 2.88721 2.97005 3.96038 4.05590 4.17932 4.25297 4.33490 4.43448 4.45948 4.51291 4.61067 4.72767 4.76866 4.86328 4.88551 4.97074 5.15088 5.21432 5.40162 5.44765 5.54454 5.74953 5.86343 5.96822 6.35663 6.57237 6.94931 7.20087 8.69002 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018573 B = 0.006815 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.235880 B = 4107.518335 C = 4743.078617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.060 3.940 4 C -0.167 4.167 5 C -0.126 4.126 6 C -0.095 4.095 7 C -0.104 4.104 8 C -0.173 4.173 9 C 0.089 3.911 10 O -0.326 6.326 11 C 0.212 3.788 12 H 0.031 0.969 13 C -0.550 4.550 14 H 0.061 0.939 15 C 0.027 3.973 16 N -0.909 5.909 17 Si 0.978 3.022 18 H -0.267 1.267 19 H -0.272 1.272 20 H -0.271 1.271 21 C -0.025 4.025 22 Cl -0.220 7.220 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.111 0.889 26 H 0.163 0.837 27 H 0.158 0.842 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.277 0.723 33 H 0.119 0.881 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.529 6.354 -0.851 13.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.015 3.985 4 C -0.186 4.186 5 C -0.144 4.144 6 C -0.095 4.095 7 C -0.161 4.161 8 C -0.191 4.191 9 C 0.043 3.957 10 O -0.241 6.241 11 C 0.157 3.843 12 H 0.048 0.952 13 C -0.587 4.587 14 H 0.079 0.921 15 C -0.174 4.174 16 N -0.546 5.546 17 Si 0.801 3.199 18 H -0.193 1.193 19 H -0.197 1.197 20 H -0.196 1.196 21 C -0.087 4.087 22 Cl -0.194 7.194 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.129 0.871 26 H 0.180 0.820 27 H 0.176 0.824 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.356 6.119 -0.948 12.934 hybrid contribution 0.736 -0.600 0.196 0.970 sum -10.620 5.519 -0.752 11.992 Atomic orbital electron populations 1.23302 0.76826 1.05129 1.02195 1.86152 1.23155 1.26646 1.89599 1.18547 0.88956 0.86182 1.04816 1.21283 1.00751 0.90642 1.05901 1.21003 0.93260 0.97870 1.02236 1.19947 0.94269 0.95100 1.00208 1.20737 1.00264 0.92369 1.02690 1.21122 1.00343 0.91430 1.06243 1.18804 0.89389 0.86981 1.00487 1.86148 1.20974 1.29175 1.87813 1.20239 0.74381 0.98368 0.91351 0.95159 1.21243 0.92066 1.12578 1.32839 0.92054 1.25726 0.96857 0.98723 0.96075 1.69881 1.06863 1.35050 1.42794 0.85244 0.77618 0.78374 0.78658 1.19258 1.19724 1.19576 1.25394 1.02983 0.86935 0.93436 1.98627 1.88625 1.52424 1.79736 0.91495 0.91576 0.87055 0.82000 0.82396 0.90869 0.89065 0.92519 0.86313 0.91392 0.86346 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.57 16 2 O -0.34 -12.78 10.28 -79.63 -0.82 -13.60 16 3 C 0.06 2.32 6.70 22.57 0.15 2.47 16 4 C -0.17 -4.91 9.04 22.35 0.20 -4.70 16 5 C -0.13 -3.47 9.69 22.27 0.22 -3.25 16 6 C -0.09 -3.09 5.88 -19.86 -0.12 -3.21 16 7 C -0.10 -2.65 10.01 71.24 0.71 -1.93 16 8 C -0.17 -7.14 6.70 22.35 0.15 -6.99 16 9 C 0.09 4.04 5.98 22.57 0.14 4.18 16 10 O -0.33 -17.06 9.51 -79.61 -0.76 -17.82 16 11 C 0.21 11.22 2.19 29.85 0.07 11.28 16 12 H 0.03 1.71 5.40 -2.39 -0.01 1.70 16 13 C -0.55 -30.75 8.89 25.60 0.23 -30.52 16 14 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 15 C 0.03 1.44 5.29 84.66 0.45 1.89 16 16 N -0.91 -48.73 11.29 21.45 0.24 -48.48 16 17 Si 0.98 41.85 29.54 68.60 2.03 43.88 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 C -0.02 -1.20 6.17 71.98 0.44 -0.76 16 22 Cl -0.22 -9.55 25.62 -2.72 -0.07 -9.62 16 23 H 0.07 1.27 7.66 -2.39 -0.02 1.26 16 24 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 25 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.16 3.41 6.30 -2.91 -0.02 3.39 16 27 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.09 1.74 8.08 -2.39 -0.02 1.72 16 30 H 0.06 1.53 8.08 -2.39 -0.02 1.51 16 31 H 0.12 5.40 5.10 -2.91 -0.01 5.39 16 32 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.12 6.13 5.95 -2.39 -0.01 6.12 16 34 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -63.68 296.77 5.48 -58.20 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 1.11 Total: 17.43 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 3.75 Total: -29.99 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.24 Total: -48.48 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -1.58 Total: -31.42 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 17 Polarization: -9.55 SS G_CDS: -0.07 Total: -9.62 kcal Total: -63.68 5.48 -58.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225323635.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.641 kcal (2) G-P(sol) polarization free energy of solvation -63.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds