Wall clock time and date at job start Mon Mar 30 2020 00:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 117.00725 * 2 1 4 4 C 1.38790 * 120.03344 * 180.02562 * 3 2 1 5 5 C 1.38149 * 120.05799 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.94866 * 179.97438 * 5 4 3 7 7 C 1.38202 * 120.10972 * 359.74335 * 5 4 3 8 8 C 1.38752 * 120.05274 * 0.51103 * 7 5 4 9 9 O 1.35902 * 120.03080 * 179.76732 * 8 7 5 10 10 C 1.42903 * 116.99482 * 355.70523 * 9 8 7 11 11 H 1.08997 * 109.47066 * 27.29910 * 10 9 8 12 12 C 1.50698 * 109.46564 * 147.29585 * 10 9 8 13 13 H 1.08000 * 120.00339 * 34.55379 * 12 10 9 14 14 C 1.37875 * 120.00119 * 214.54807 * 12 10 9 15 15 N 1.31513 * 120.00186 * 184.21657 * 14 12 10 16 16 Si 1.86802 * 120.00069 * 4.21630 * 14 12 10 17 17 H 1.48500 * 109.47065 * 94.07769 * 16 14 12 18 18 H 1.48495 * 109.47329 * 214.08424 * 16 14 12 19 19 H 1.48505 * 109.46981 * 334.08479 * 16 14 12 20 20 C 1.52992 * 109.47286 * 267.29750 * 10 9 8 21 21 Cl 1.80298 * 109.47397 * 64.87324 * 20 10 9 22 22 C 1.38624 * 120.02222 * 359.97438 * 3 2 1 23 23 H 1.08999 * 109.46701 * 300.00649 * 1 2 3 24 24 H 1.09000 * 109.47022 * 59.99887 * 1 2 3 25 25 H 1.08992 * 109.47610 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.97045 * 359.95471 * 4 3 2 27 27 H 1.09000 * 109.46889 * 89.99588 * 6 5 4 28 28 H 1.09002 * 109.47191 * 209.99894 * 6 5 4 29 29 H 1.09000 * 109.46935 * 330.00217 * 6 5 4 30 30 H 1.07991 * 119.97650 * 180.25316 * 7 5 4 31 31 H 0.96999 * 119.99932 * 179.97438 * 15 14 12 32 32 H 1.09004 * 109.47534 * 304.87313 * 20 10 9 33 33 H 1.09004 * 109.47087 * 184.87524 * 20 10 9 34 34 H 1.07995 * 120.05222 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 3.4321 1.2840 -0.0005 5 6 4.0599 2.5146 -0.0011 6 6 5.5650 2.5913 -0.0011 7 6 3.3101 3.6755 -0.0064 8 6 1.9243 3.6076 -0.0006 9 8 1.1874 4.7495 -0.0011 10 6 1.9029 5.9833 0.0876 11 1 2.9012 5.8552 -0.3308 12 6 1.1671 7.0473 -0.6853 13 1 0.0875 7.0429 -0.7165 14 6 1.8719 8.0265 -1.3526 15 7 1.2302 9.0020 -1.9577 16 14 3.7385 7.9676 -1.3972 17 1 4.1825 7.2753 -2.6336 18 1 4.2779 9.3511 -1.3835 19 1 4.2389 7.2294 -0.2097 20 6 2.0148 6.4037 1.5544 21 17 3.0173 5.2019 2.4494 22 6 1.2917 2.3737 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 4.0203 0.3782 -0.0002 27 1 5.9279 2.6092 -1.0287 28 1 5.8826 3.4988 0.5124 29 1 5.9731 1.7211 0.5131 30 1 3.8032 4.6363 -0.0110 31 1 1.7262 9.6911 -2.4269 32 1 1.0195 6.4479 1.9967 33 1 2.4836 7.3859 1.6161 34 1 0.2132 2.3187 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225338097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:55 Heat of formation + Delta-G solvation = -83.494819 kcal Electronic energy + Delta-G solvation = -18813.700601 eV Core-core repulsion = 15737.389150 eV Total energy + Delta-G solvation = -3076.311452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.42440 -39.96442 -37.89280 -36.73121 -35.26881 -33.27588 -31.97913 -30.71404 -28.43135 -27.37716 -27.28020 -24.27523 -22.33888 -21.93090 -19.58585 -18.97801 -17.62989 -17.37978 -16.98980 -16.74592 -16.48853 -15.99459 -15.27107 -14.86173 -14.76512 -14.59832 -14.34678 -14.27649 -13.84508 -13.47651 -13.07457 -12.96395 -12.90548 -12.73159 -12.53009 -12.33156 -12.04573 -11.88402 -11.80835 -11.41239 -11.15284 -10.98485 -10.76050 -9.36926 -8.81527 -8.52282 -6.66565 0.42157 0.58561 1.23037 1.29649 1.37599 1.39214 2.16019 2.26202 2.51399 2.80212 2.92790 3.86693 3.93881 4.09969 4.16958 4.23167 4.27764 4.36085 4.39044 4.44141 4.56219 4.69408 4.72717 4.84147 4.85219 4.87814 5.09731 5.17736 5.35165 5.47064 5.66818 5.73800 5.93530 6.39974 6.46187 6.73886 7.03361 8.62629 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.006766 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.992394 B = 4137.111094 C = 4414.503828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.324 6.324 3 C 0.160 3.840 4 C -0.203 4.203 5 C -0.014 4.014 6 C -0.112 4.112 7 C -0.247 4.247 8 C 0.165 3.835 9 O -0.325 6.325 10 C 0.180 3.820 11 H 0.059 0.941 12 C -0.537 4.537 13 H 0.044 0.956 14 C 0.039 3.961 15 N -0.917 5.917 16 Si 0.921 3.079 17 H -0.263 1.263 18 H -0.266 1.266 19 H -0.234 1.234 20 C -0.036 4.036 21 Cl -0.205 7.205 22 C -0.269 4.269 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.129 0.871 26 H 0.149 0.851 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.279 0.721 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 -13.781 5.065 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.237 6.237 3 C 0.114 3.886 4 C -0.222 4.222 5 C -0.015 4.015 6 C -0.169 4.169 7 C -0.266 4.266 8 C 0.119 3.881 9 O -0.238 6.238 10 C 0.124 3.876 11 H 0.076 0.924 12 C -0.574 4.574 13 H 0.063 0.937 14 C -0.164 4.164 15 N -0.553 5.553 16 Si 0.741 3.259 17 H -0.188 1.188 18 H -0.191 1.191 19 H -0.157 1.157 20 C -0.099 4.099 21 Cl -0.179 7.179 22 C -0.289 4.289 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.147 0.853 26 H 0.166 0.834 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.245 -13.844 5.021 15.996 hybrid contribution -0.033 0.871 -0.214 0.897 sum 6.212 -12.973 4.807 15.166 Atomic orbital electron populations 1.23319 0.76763 1.05590 1.01882 1.86022 1.23197 1.25972 1.88520 1.18706 0.92323 0.83393 0.94131 1.20303 0.90965 0.98457 1.12443 1.19730 0.97349 0.90906 0.93469 1.20874 0.88614 1.03796 1.03568 1.21180 0.92721 0.99714 1.13003 1.19065 0.90662 0.86726 0.91675 1.86196 1.37534 1.13418 1.86685 1.20715 0.94349 0.80469 0.92042 0.92364 1.20781 0.94465 1.09499 1.32661 0.93734 1.25756 1.03799 0.93914 0.92887 1.69959 1.38744 1.13043 1.33590 0.86112 0.79322 0.79411 0.81007 1.18782 1.19070 1.15686 1.25590 0.97267 0.93409 0.93637 1.98671 1.74867 1.64617 1.79702 1.20457 1.00735 0.89878 1.17801 0.92411 0.92528 0.85337 0.83377 0.89599 0.91437 0.89183 0.86153 0.91188 0.88729 0.87643 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.32 -8.90 10.50 -92.34 -0.97 -9.87 16 3 C 0.16 5.10 6.68 22.49 0.15 5.25 16 4 C -0.20 -5.99 9.63 22.38 0.22 -5.77 16 5 C -0.01 -0.44 5.88 -19.89 -0.12 -0.55 16 6 C -0.11 -2.54 10.01 71.24 0.71 -1.82 16 7 C -0.25 -9.20 6.70 22.38 0.15 -9.05 16 8 C 0.17 6.73 5.93 22.49 0.13 6.86 16 9 O -0.32 -15.14 9.73 -92.45 -0.90 -16.04 16 10 C 0.18 8.30 1.80 29.84 0.05 8.36 16 11 H 0.06 2.64 2.38 -2.39 -0.01 2.64 16 12 C -0.54 -29.47 9.24 25.60 0.24 -29.24 16 13 H 0.04 2.76 8.06 -2.91 -0.02 2.74 16 14 C 0.04 2.10 5.47 84.65 0.46 2.57 16 15 N -0.92 -53.04 13.96 21.45 0.30 -52.74 16 16 Si 0.92 39.51 27.26 68.60 1.87 41.38 16 17 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.23 -9.11 6.44 99.48 0.64 -8.47 16 20 C -0.04 -1.44 6.32 71.98 0.45 -0.99 16 21 Cl -0.20 -7.38 25.63 -2.72 -0.07 -7.44 16 22 C -0.27 -9.67 8.98 22.46 0.20 -9.47 16 23 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 24 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 25 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16 29 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 30 H 0.12 4.65 5.14 -2.92 -0.01 4.64 16 31 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.09 3.72 8.14 -2.38 -0.02 3.70 16 33 H 0.11 4.02 8.14 -2.38 -0.02 4.00 16 34 H 0.13 4.51 6.30 -2.91 -0.02 4.49 16 Total: -1.00 -62.70 296.47 5.04 -57.66 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.04 Total: 19.43 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 3.77 Total: -32.37 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.30 Total: -52.74 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -1.87 Total: -25.91 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.87 Total: 41.38 kcal Atomic # 17 Polarization: -7.38 SS G_CDS: -0.07 Total: -7.44 kcal Total: -62.70 5.04 -57.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225338097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.836 kcal (2) G-P(sol) polarization free energy of solvation -62.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds