Wall clock time and date at job start Mon Mar 30 2020 01:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38148 * 119.99964 * 2 1 4 4 C 1.50701 * 120.00087 * 0.02562 * 3 2 1 5 5 C 1.38680 * 119.99926 * 179.97438 * 3 2 1 6 6 O 1.35977 * 119.99988 * 180.02562 * 5 3 2 7 7 C 1.42894 * 117.00079 * 185.16030 * 6 5 3 8 8 H 1.08997 * 109.47479 * 21.77744 * 7 6 5 9 9 C 1.50707 * 109.47433 * 141.77947 * 7 6 5 10 10 H 1.08002 * 119.99796 * 95.35379 * 9 7 6 11 11 C 1.37869 * 119.99800 * 275.35552 * 9 7 6 12 12 N 1.31514 * 120.00331 * 355.27779 * 11 9 7 13 13 Si 1.86799 * 119.99880 * 175.27365 * 11 9 7 14 14 H 1.48500 * 109.47119 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47034 * 120.00268 * 13 11 9 16 16 H 1.48500 * 109.47332 * 239.99890 * 13 11 9 17 17 C 1.53004 * 109.47330 * 261.77689 * 7 6 5 18 18 Cl 1.80306 * 109.46827 * 64.65416 * 17 7 6 19 19 C 1.38719 * 119.99860 * 0.28363 * 5 3 2 20 20 C 1.38111 * 119.99926 * 359.44386 * 19 5 3 21 21 C 1.38676 * 119.99608 * 179.97438 * 2 1 3 22 22 O 1.35978 * 120.00698 * 359.97438 * 21 2 1 23 23 H 1.08997 * 109.47330 * 89.99635 * 1 2 3 24 24 H 1.09004 * 109.47023 * 209.99618 * 1 2 3 25 25 H 1.09003 * 109.47174 * 329.99743 * 1 2 3 26 26 H 1.08996 * 109.47356 * 269.97516 * 4 3 2 27 27 H 1.09004 * 109.47029 * 29.97914 * 4 3 2 28 28 H 1.09007 * 109.46883 * 149.97478 * 4 3 2 29 29 H 0.97002 * 119.99594 * 5.25398 * 12 11 9 30 30 H 1.08998 * 109.47718 * 184.65281 * 17 7 6 31 31 H 1.08998 * 109.47069 * 304.65574 * 17 7 6 32 32 H 1.07994 * 119.99921 * 179.70120 * 19 5 3 33 33 H 1.07995 * 120.00019 * 180.27811 * 20 19 5 34 34 H 0.96705 * 113.99613 * 90.00031 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1964 0.0000 4 6 1.4442 2.5015 0.0006 5 6 3.5845 1.1964 0.0005 6 8 4.2644 2.3740 0.0011 7 6 5.6870 2.3018 -0.1129 8 1 5.9677 1.3486 -0.5608 9 6 6.1792 3.4299 -0.9827 10 1 6.5254 4.3481 -0.5315 11 6 6.1875 3.2897 -2.3542 12 7 5.8543 2.1404 -2.8998 13 14 6.6719 4.7323 -3.4375 14 1 7.0007 5.9030 -2.5851 15 1 7.8585 4.3639 -4.2510 16 1 5.5422 5.0766 -4.3378 17 6 6.3165 2.4174 1.2768 18 17 5.8363 0.9942 2.2743 19 6 4.2781 -0.0050 -0.0049 20 6 3.5875 -1.2010 0.0008 21 6 2.2003 -1.2010 0.0005 22 8 1.5205 -2.3787 0.0016 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.2625 2.8167 -1.0269 27 1 0.4918 2.3710 0.5145 28 1 2.0334 3.2609 0.5148 29 1 5.5298 1.4153 -2.3432 30 1 7.4021 2.4455 1.1828 31 1 5.9697 3.3319 1.7579 32 1 5.3580 -0.0050 -0.0093 33 1 4.1275 -2.1363 0.0011 34 1 1.3235 -2.7198 -0.8816 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225777647.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:17 Heat of formation + Delta-G solvation = -83.204160 kcal Electronic energy + Delta-G solvation = -19067.467299 eV Core-core repulsion = 15991.168451 eV Total energy + Delta-G solvation = -3076.298848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83681 -37.97572 -35.87812 -35.13232 -33.31710 -32.80764 -30.49841 -29.28646 -26.57293 -25.90990 -24.82814 -22.37797 -21.13253 -20.01611 -17.66533 -17.30765 -17.02363 -15.85818 -14.99635 -14.58538 -14.10965 -14.01736 -13.93311 -13.38078 -13.02916 -12.73527 -12.56872 -12.49626 -12.36531 -12.05612 -11.67314 -11.44950 -11.20886 -10.99898 -10.92705 -10.55695 -10.51000 -10.30850 -9.98121 -9.77605 -9.33796 -9.07360 -8.64841 -8.10226 -7.09971 -6.78693 -4.62193 1.82997 1.95069 2.91066 3.26506 3.30784 3.44308 4.10335 4.20112 4.35373 4.70350 5.15004 5.26989 5.34720 5.48353 5.64602 5.73841 5.76805 5.79543 5.83830 5.97103 6.10839 6.17606 6.21713 6.33099 6.38308 6.53260 6.64349 6.89580 6.97264 7.05672 7.29267 7.54820 7.99841 8.04467 8.38367 8.56895 9.17594 10.58627 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.007206 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.661702 B = 3884.899237 C = 4571.549851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.080 4.080 3 C -0.126 4.126 4 C -0.099 4.099 5 C 0.159 3.841 6 O -0.309 6.309 7 C 0.174 3.826 8 H 0.056 0.944 9 C -0.599 4.599 10 H 0.065 0.935 11 C 0.036 3.964 12 N -0.877 5.877 13 Si 1.081 2.919 14 H -0.284 1.284 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.029 4.029 18 Cl -0.216 7.216 19 C -0.187 4.187 20 C -0.106 4.106 21 C 0.038 3.962 22 O -0.498 6.498 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.275 0.725 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 -2.817 3.913 7.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.081 4.081 3 C -0.127 4.127 4 C -0.155 4.155 5 C 0.111 3.889 6 O -0.222 6.222 7 C 0.120 3.880 8 H 0.074 0.926 9 C -0.635 4.635 10 H 0.083 0.917 11 C -0.173 4.173 12 N -0.511 5.511 13 Si 0.907 3.093 14 H -0.210 1.210 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.092 4.092 18 Cl -0.190 7.190 19 C -0.205 4.205 20 C -0.125 4.125 21 C -0.006 4.006 22 O -0.306 6.306 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.197 -2.215 3.081 6.434 hybrid contribution -0.050 -0.845 1.163 1.438 sum -5.247 -3.060 4.244 7.409 Atomic orbital electron populations 1.20686 0.91305 1.02669 1.01861 1.19667 0.95828 0.91558 1.01004 1.18944 0.90993 0.95069 1.07740 1.20563 0.98736 0.94315 1.01896 1.19033 0.91133 0.86768 0.91990 1.86611 1.23992 1.26556 1.85090 1.20748 0.76378 1.00617 0.90225 0.92647 1.21920 1.46016 1.02523 0.93035 0.91670 1.26151 0.93358 1.01317 0.96510 1.70742 1.37231 1.02818 1.40297 0.83379 0.76987 0.73761 0.75172 1.20995 1.20820 1.20795 1.25243 1.02143 0.88124 0.93709 1.98681 1.93972 1.50877 1.75509 1.21227 1.00756 0.91656 1.06905 1.21024 0.93142 0.97910 1.00412 1.17930 0.89561 0.84375 1.08740 1.84831 1.76642 1.36541 1.32636 0.91676 0.91395 0.91338 0.91815 0.92252 0.91208 0.91301 0.88442 0.89414 0.84951 0.86339 0.77204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.38 36.01 0.34 -1.17 16 2 C -0.08 -1.41 5.89 -104.49 -0.62 -2.03 16 3 C -0.13 -2.49 5.89 -104.49 -0.62 -3.10 16 4 C -0.10 -1.70 9.38 36.01 0.34 -1.36 16 5 C 0.16 3.47 6.16 -39.24 -0.24 3.23 16 6 O -0.31 -7.36 8.72 -19.67 -0.17 -7.53 16 7 C 0.17 4.08 1.87 -27.88 -0.05 4.03 16 8 H 0.06 1.38 4.00 -51.93 -0.21 1.17 16 9 C -0.60 -15.38 8.69 -34.44 -0.30 -15.68 16 10 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.04 0.95 5.45 -17.82 -0.10 0.86 16 12 N -0.88 -24.64 13.63 55.43 0.76 -23.88 16 13 Si 1.08 23.24 29.91 -169.99 -5.08 18.16 16 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 C -0.03 -0.59 6.32 37.16 0.23 -0.35 16 18 Cl -0.22 -4.11 25.72 -51.86 -1.33 -5.44 16 19 C -0.19 -3.88 7.20 -39.45 -0.28 -4.16 16 20 C -0.11 -1.98 9.98 -39.45 -0.39 -2.38 16 21 C 0.04 0.67 6.67 -39.24 -0.26 0.41 16 22 O -0.50 -7.51 12.54 -19.67 -0.25 -7.76 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 25 H 0.07 0.87 5.95 -51.93 -0.31 0.56 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.85 5.95 -51.93 -0.31 0.54 16 28 H 0.07 1.27 7.53 -51.92 -0.39 0.88 16 29 H 0.28 7.76 6.66 -40.82 -0.27 7.49 16 30 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 31 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.13 2.82 4.87 -52.49 -0.26 2.56 16 33 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.37 3.94 9.06 45.56 0.41 4.35 16 LS Contribution 294.70 15.07 4.44 4.44 Total: -1.00 -29.09 294.70 -6.63 -35.72 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -3.04 Total: 7.99 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -1.95 Total: -21.71 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.76 Total: -23.88 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.42 Total: -15.29 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.08 Total: 18.16 kcal Atomic # 17 Polarization: -4.11 SS G_CDS: -1.33 Total: -5.44 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.09 -6.63 -35.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225777647.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.480 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds