Wall clock time and date at job start Mon Mar 30 2020 01:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38148 * 119.99964 * 2 1 4 4 C 1.50701 * 120.00087 * 0.02562 * 3 2 1 5 5 C 1.38680 * 119.99926 * 179.97438 * 3 2 1 6 6 O 1.35977 * 119.99988 * 180.02562 * 5 3 2 7 7 C 1.42894 * 117.00079 * 185.16030 * 6 5 3 8 8 H 1.08997 * 109.47479 * 21.77744 * 7 6 5 9 9 C 1.50707 * 109.47433 * 141.77947 * 7 6 5 10 10 H 1.08002 * 119.99796 * 95.35379 * 9 7 6 11 11 C 1.37869 * 119.99800 * 275.35552 * 9 7 6 12 12 N 1.31514 * 120.00331 * 355.27779 * 11 9 7 13 13 Si 1.86799 * 119.99880 * 175.27365 * 11 9 7 14 14 H 1.48500 * 109.47119 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47034 * 120.00268 * 13 11 9 16 16 H 1.48500 * 109.47332 * 239.99890 * 13 11 9 17 17 C 1.53004 * 109.47330 * 261.77689 * 7 6 5 18 18 Cl 1.80306 * 109.46827 * 64.65416 * 17 7 6 19 19 C 1.38719 * 119.99860 * 0.28363 * 5 3 2 20 20 C 1.38111 * 119.99926 * 359.44386 * 19 5 3 21 21 C 1.38676 * 119.99608 * 179.97438 * 2 1 3 22 22 O 1.35978 * 120.00698 * 359.97438 * 21 2 1 23 23 H 1.08997 * 109.47330 * 89.99635 * 1 2 3 24 24 H 1.09004 * 109.47023 * 209.99618 * 1 2 3 25 25 H 1.09003 * 109.47174 * 329.99743 * 1 2 3 26 26 H 1.08996 * 109.47356 * 269.97516 * 4 3 2 27 27 H 1.09004 * 109.47029 * 29.97914 * 4 3 2 28 28 H 1.09007 * 109.46883 * 149.97478 * 4 3 2 29 29 H 0.97002 * 119.99594 * 5.25398 * 12 11 9 30 30 H 1.08998 * 109.47718 * 184.65281 * 17 7 6 31 31 H 1.08998 * 109.47069 * 304.65574 * 17 7 6 32 32 H 1.07994 * 119.99921 * 179.70120 * 19 5 3 33 33 H 1.07995 * 120.00019 * 180.27811 * 20 19 5 34 34 H 0.96705 * 113.99613 * 90.00031 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1964 0.0000 4 6 1.4442 2.5015 0.0006 5 6 3.5845 1.1964 0.0005 6 8 4.2644 2.3740 0.0011 7 6 5.6870 2.3018 -0.1129 8 1 5.9677 1.3486 -0.5608 9 6 6.1792 3.4299 -0.9827 10 1 6.5254 4.3481 -0.5315 11 6 6.1875 3.2897 -2.3542 12 7 5.8543 2.1404 -2.8998 13 14 6.6719 4.7323 -3.4375 14 1 7.0007 5.9030 -2.5851 15 1 7.8585 4.3639 -4.2510 16 1 5.5422 5.0766 -4.3378 17 6 6.3165 2.4174 1.2768 18 17 5.8363 0.9942 2.2743 19 6 4.2781 -0.0050 -0.0049 20 6 3.5875 -1.2010 0.0008 21 6 2.2003 -1.2010 0.0005 22 8 1.5205 -2.3787 0.0016 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.2625 2.8167 -1.0269 27 1 0.4918 2.3710 0.5145 28 1 2.0334 3.2609 0.5148 29 1 5.5298 1.4153 -2.3432 30 1 7.4021 2.4455 1.1828 31 1 5.9697 3.3319 1.7579 32 1 5.3580 -0.0050 -0.0093 33 1 4.1275 -2.1363 0.0011 34 1 1.3235 -2.7198 -0.8816 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225777647.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:16 Heat of formation + Delta-G solvation = -100.997812 kcal Electronic energy + Delta-G solvation = -19068.238890 eV Core-core repulsion = 15991.168451 eV Total energy + Delta-G solvation = -3077.070438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.34530 -39.51077 -37.31590 -36.69144 -35.19947 -34.22601 -32.13007 -30.77876 -27.99068 -27.27641 -26.73550 -24.05389 -22.58615 -21.58824 -19.34104 -18.78629 -18.67226 -17.38499 -16.49400 -16.14622 -15.83292 -15.63245 -15.50074 -14.70945 -14.53777 -14.14361 -14.03033 -13.96393 -13.89202 -13.52221 -13.29889 -12.81234 -12.69390 -12.63697 -12.30668 -12.15345 -12.07749 -11.92656 -11.42050 -11.37000 -11.03696 -10.81419 -10.56741 -9.53932 -8.84090 -8.65969 -6.67578 0.35636 0.47409 1.30974 1.53432 1.60183 1.78217 2.40511 2.59566 2.72191 3.27476 3.39407 3.88302 3.92551 4.02094 4.07878 4.14798 4.28302 4.45737 4.53789 4.65017 4.72929 4.82212 4.84808 4.90555 4.95181 5.15463 5.26813 5.40556 5.50657 5.60042 5.68624 5.88091 5.96555 6.32346 6.81128 6.95422 7.20429 8.53372 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.007206 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.661702 B = 3884.899237 C = 4571.549851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.094 4.094 5 C 0.124 3.876 6 O -0.327 6.327 7 C 0.174 3.826 8 H 0.037 0.963 9 C -0.612 4.612 10 H 0.067 0.933 11 C -0.010 4.010 12 N -0.908 5.908 13 Si 1.124 2.876 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.282 1.282 17 C -0.023 4.023 18 Cl -0.206 7.206 19 C -0.197 4.197 20 C -0.117 4.117 21 C 0.049 3.951 22 O -0.497 6.497 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.262 0.738 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 -3.014 4.194 8.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.151 4.151 5 C 0.078 3.922 6 O -0.242 6.242 7 C 0.120 3.880 8 H 0.054 0.946 9 C -0.649 4.649 10 H 0.085 0.915 11 C -0.213 4.213 12 N -0.543 5.543 13 Si 0.944 3.056 14 H -0.189 1.189 15 H -0.199 1.199 16 H -0.208 1.208 17 C -0.086 4.086 18 Cl -0.179 7.179 19 C -0.216 4.216 20 C -0.136 4.136 21 C 0.005 3.995 22 O -0.308 6.308 23 H 0.101 0.899 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -6.638 -2.433 3.373 7.833 hybrid contribution 0.282 -0.944 1.148 1.513 sum -6.356 -3.377 4.521 8.500 Atomic orbital electron populations 1.20758 0.88172 1.03826 1.03317 1.20096 0.98040 0.90655 0.99524 1.19337 0.90403 0.96920 1.07501 1.20570 0.99687 0.92763 1.02045 1.19328 0.92188 0.86269 0.94445 1.86463 1.23654 1.27865 1.86189 1.20605 0.76645 0.98965 0.91758 0.94551 1.22255 1.45913 1.03058 0.93656 0.91501 1.27498 0.92797 1.02599 0.98366 1.70853 1.39759 1.03532 1.40201 0.82860 0.76950 0.71696 0.74107 1.18936 1.19918 1.20752 1.25049 1.02533 0.88727 0.92268 1.98676 1.93997 1.50369 1.74904 1.21168 1.00179 0.92342 1.07940 1.21257 0.94083 0.97804 1.00446 1.18004 0.89284 0.85431 1.06826 1.84764 1.75995 1.35285 1.34748 0.89893 0.90332 0.90083 0.91904 0.88963 0.92908 0.92711 0.87185 0.88732 0.86413 0.84711 0.74340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.50 9.38 71.24 0.67 -1.84 16 2 C -0.08 -2.74 5.89 -19.78 -0.12 -2.86 16 3 C -0.14 -5.44 5.89 -19.78 -0.12 -5.56 16 4 C -0.09 -3.15 9.38 71.24 0.67 -2.49 16 5 C 0.12 5.53 6.16 22.49 0.14 5.67 16 6 O -0.33 -16.02 8.72 -93.30 -0.81 -16.83 16 7 C 0.17 8.41 1.87 29.85 0.06 8.47 16 8 H 0.04 1.91 4.00 -2.39 -0.01 1.90 16 9 C -0.61 -32.02 8.69 25.60 0.22 -31.80 16 10 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 11 C -0.01 -0.52 5.45 84.65 0.46 -0.06 16 12 N -0.91 -52.47 13.63 21.44 0.29 -52.18 16 13 Si 1.12 46.79 29.91 68.60 2.05 48.84 16 14 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 15 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 16 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 17 C -0.02 -0.93 6.32 71.98 0.45 -0.47 16 18 Cl -0.21 -7.80 25.72 -2.72 -0.07 -7.87 16 19 C -0.20 -8.36 7.20 22.35 0.16 -8.20 16 20 C -0.12 -4.31 9.98 22.36 0.22 -4.09 16 21 C 0.05 1.64 6.67 22.49 0.15 1.79 16 22 O -0.50 -13.35 12.54 -93.31 -1.17 -14.52 16 23 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.08 1.74 7.52 -2.38 -0.02 1.72 16 25 H 0.08 1.74 5.95 -2.39 -0.01 1.73 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.09 2.40 5.95 -2.38 -0.01 2.38 16 28 H 0.05 1.92 7.53 -2.38 -0.02 1.90 16 29 H 0.26 15.45 6.66 -92.71 -0.62 14.84 16 30 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 31 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 32 H 0.12 5.24 4.87 -2.91 -0.01 5.23 16 33 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 34 H 0.40 6.93 9.06 -74.05 -0.67 6.26 16 Total: -1.00 -63.30 294.70 3.88 -59.42 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.62 Total: 24.56 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 2.97 Total: -41.43 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.29 Total: -52.18 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.98 Total: -31.35 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.05 Total: 48.84 kcal Atomic # 17 Polarization: -7.80 SS G_CDS: -0.07 Total: -7.87 kcal Total: -63.30 3.88 -59.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225777647.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.574 kcal (2) G-P(sol) polarization free energy of solvation -63.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds