Wall clock time and date at job start Mon Mar 30 2020 01:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36011 * 116.99937 * 2 1 4 4 C 1.38707 * 120.02208 * 0.25262 * 3 2 1 5 5 C 1.38768 * 120.53278 * 180.29055 * 4 3 2 6 6 C 1.36490 * 120.58560 * 359.71362 * 5 4 3 7 7 C 1.40773 * 120.02280 * 0.02839 * 6 5 4 8 8 C 1.41174 * 120.26377 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00023 * 152.36283 * 8 7 6 10 10 C 1.39922 * 120.00132 * 332.34851 * 8 7 6 11 11 N 1.30874 * 120.00070 * 160.18485 * 10 8 7 12 12 Si 1.86805 * 120.00165 * 340.19259 * 10 8 7 13 13 H 1.48501 * 109.46743 * 95.12086 * 12 10 8 14 14 H 1.48494 * 109.47041 * 215.12002 * 12 10 8 15 15 H 1.48499 * 109.46717 * 335.12357 * 12 10 8 16 16 C 1.38881 * 120.01907 * 180.02562 * 3 2 1 17 17 O 1.35742 * 120.28414 * 359.97438 * 16 3 2 18 18 C 1.42896 * 117.00111 * 277.76583 * 17 16 3 19 19 H 1.09002 * 109.47421 * 33.28069 * 18 17 16 20 20 C 1.53004 * 109.47578 * 273.27633 * 18 17 16 21 21 C 1.53002 * 109.47094 * 153.27638 * 18 17 16 22 22 Cl 1.80302 * 109.47216 * 295.00282 * 21 18 17 23 23 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47047 * 300.00158 * 1 2 3 25 25 H 1.08994 * 109.47341 * 60.00418 * 1 2 3 26 26 H 1.07993 * 119.73050 * 359.97438 * 4 3 2 27 27 H 1.08009 * 119.70924 * 179.69872 * 5 4 3 28 28 H 1.08004 * 119.98716 * 180.02562 * 6 5 4 29 29 H 0.96996 * 120.00227 * 179.97438 * 11 10 8 30 30 H 1.08999 * 109.47055 * 304.31266 * 20 18 17 31 31 H 1.09005 * 109.46876 * 64.30734 * 20 18 17 32 32 H 1.08996 * 109.47259 * 184.31036 * 20 18 17 33 33 H 1.08997 * 109.47101 * 55.00335 * 21 18 17 34 34 H 1.09000 * 109.47287 * 174.99898 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2914 2.3754 0.0053 5 6 1.9103 3.6175 -0.0007 6 6 3.2717 3.7150 -0.0061 7 6 4.0614 2.5496 -0.0061 8 6 5.4699 2.6445 -0.0111 9 1 6.0659 1.8552 0.4225 10 6 6.0938 3.7613 -0.5780 11 7 7.3287 4.0537 -0.2581 12 14 5.1642 4.8350 -1.7915 13 1 4.5584 5.9843 -1.0723 14 1 6.1021 5.3378 -2.8271 15 1 4.0931 4.0362 -2.4395 16 6 3.4333 1.2850 -0.0005 17 8 4.1786 0.1505 -0.0005 18 6 4.3915 -0.4858 1.2611 19 1 3.5145 -0.3436 1.8924 20 6 5.6157 0.1292 1.9425 21 6 4.6265 -1.9821 1.0443 22 17 3.1304 -2.7349 0.3767 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 0.2132 2.3143 0.0090 27 1 1.3094 4.5150 -0.0014 28 1 3.7433 4.6866 -0.0103 29 1 7.7614 4.8276 -0.6514 30 1 6.4767 0.0550 1.2783 31 1 5.4185 1.1777 2.1660 32 1 5.8237 -0.4069 2.8684 33 1 5.4484 -2.1229 0.3424 34 1 4.8765 -2.4521 1.9954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225841614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:24 Heat of formation + Delta-G solvation = -71.957506 kcal Electronic energy + Delta-G solvation = -19281.958071 eV Core-core repulsion = 16206.146915 eV Total energy + Delta-G solvation = -3075.811156 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.32022 -37.46484 -36.22804 -35.27618 -33.54195 -32.05897 -30.13582 -28.59364 -26.70873 -26.30883 -24.93284 -21.76056 -20.92039 -20.22757 -17.92719 -17.14155 -15.89907 -15.48494 -15.12086 -15.03711 -14.57486 -14.24517 -13.90634 -13.45492 -13.19209 -12.77179 -12.51778 -12.27018 -12.04715 -11.68602 -11.65042 -11.35058 -11.11007 -10.81388 -10.69071 -10.57289 -10.24096 -9.93418 -9.92717 -9.73421 -9.61137 -9.31979 -8.69273 -7.62399 -7.07970 -7.03268 -4.54399 2.41132 2.63714 2.73616 3.07849 3.18255 3.31361 3.93841 4.11900 4.31666 4.61130 5.15892 5.33860 5.51278 5.56959 5.60477 5.65612 5.81262 5.83948 5.94867 6.00357 6.07268 6.30660 6.41233 6.53203 6.66551 6.80076 6.85808 7.08081 7.40938 7.52793 7.64485 7.76616 8.22091 8.26113 8.44932 8.69464 9.01237 9.94021 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.008259 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.552709 B = 3389.295616 C = 4487.538223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.305 6.305 3 C 0.146 3.854 4 C -0.327 4.327 5 C -0.046 4.046 6 C -0.258 4.258 7 C 0.105 3.895 8 C -0.423 4.423 9 H 0.108 0.892 10 C 0.085 3.915 11 N -0.795 5.795 12 Si 0.912 3.088 13 H -0.270 1.270 14 H -0.291 1.291 15 H -0.243 1.243 16 C -0.048 4.048 17 O -0.291 6.291 18 C 0.078 3.922 19 H 0.060 0.940 20 C -0.173 4.173 21 C -0.023 4.023 22 Cl -0.181 7.181 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.287 0.713 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 -5.792 2.473 8.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.218 6.218 3 C 0.100 3.900 4 C -0.347 4.347 5 C -0.065 4.065 6 C -0.277 4.277 7 C 0.101 3.899 8 C -0.450 4.450 9 H 0.126 0.874 10 C -0.136 4.136 11 N -0.418 5.418 12 Si 0.739 3.261 13 H -0.196 1.196 14 H -0.218 1.218 15 H -0.166 1.166 16 C -0.094 4.094 17 O -0.207 6.207 18 C 0.021 3.979 19 H 0.078 0.922 20 C -0.231 4.231 21 C -0.086 4.086 22 Cl -0.154 7.154 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.426 -6.018 2.271 8.415 hybrid contribution -0.672 0.883 -0.261 1.140 sum -6.099 -5.135 2.010 8.222 Atomic orbital electron populations 1.22801 0.80906 1.02022 1.00463 1.86195 1.19191 1.27456 1.88941 1.19327 0.91539 0.83611 0.95493 1.20311 0.97645 0.92070 1.24660 1.20136 0.94395 0.95594 0.96339 1.20605 0.93468 0.97276 1.16325 1.17678 0.93799 0.89404 0.88997 1.19655 0.90396 1.04065 1.30904 0.87449 1.26246 0.94930 0.96372 0.96037 1.69707 1.13097 1.24251 1.34750 0.86312 0.79906 0.79929 0.79958 1.19648 1.21837 1.16555 1.17882 0.84793 0.85550 1.21129 1.86141 1.70882 1.37609 1.26042 1.22429 0.97643 0.89778 0.88092 0.92152 1.22416 0.98567 1.02682 0.99436 1.24450 0.88676 0.94386 1.01108 1.98701 1.43757 1.84358 1.88594 0.89807 0.93724 0.93625 0.87999 0.88623 0.87864 0.90212 0.91459 0.90271 0.93115 0.88680 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.30 -6.11 10.14 -34.32 -0.35 -6.46 16 3 C 0.15 3.25 6.66 -39.17 -0.26 2.99 16 4 C -0.33 -6.88 9.05 -39.21 -0.35 -7.23 16 5 C -0.05 -0.99 9.96 -40.02 -0.40 -1.39 16 6 C -0.26 -6.11 7.17 -39.25 -0.28 -6.39 16 7 C 0.11 2.64 5.16 -106.70 -0.55 2.09 16 8 C -0.42 -10.98 8.55 -37.84 -0.32 -11.30 16 9 H 0.11 2.84 4.91 -52.49 -0.26 2.58 16 10 C 0.08 2.15 5.39 -17.33 -0.09 2.06 16 11 N -0.80 -20.25 13.93 55.55 0.77 -19.48 16 12 Si 0.91 20.48 24.51 -169.99 -4.17 16.31 16 13 H -0.27 -5.84 6.65 56.52 0.38 -5.46 16 14 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.24 -5.69 6.90 56.52 0.39 -5.30 16 16 C -0.05 -1.15 5.59 -38.22 -0.21 -1.37 16 17 O -0.29 -6.62 8.71 -33.47 -0.29 -6.91 16 18 C 0.08 1.44 2.85 -26.73 -0.08 1.36 16 19 H 0.06 1.16 7.92 -51.93 -0.41 0.75 16 20 C -0.17 -3.07 7.95 37.16 0.30 -2.77 16 21 C -0.02 -0.35 6.34 37.16 0.24 -0.12 16 22 Cl -0.18 -2.98 28.86 -51.86 -1.50 -4.47 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 25 H 0.05 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.10 1.86 6.27 -52.49 -0.33 1.54 16 27 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.10 2.42 4.53 -52.48 -0.24 2.18 16 29 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 30 H 0.07 1.23 7.56 -51.93 -0.39 0.84 16 31 H 0.08 1.60 6.98 -51.93 -0.36 1.24 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 293.70 15.07 4.43 4.43 Total: -1.00 -27.70 293.70 -6.20 -33.91 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.07 Total: 3.25 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -1.03 Total: -20.58 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.77 Total: -19.48 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.64 Total: -13.36 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.17 Total: 16.31 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -1.50 Total: -4.47 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.70 -6.20 -33.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.052 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds