Wall clock time and date at job start Mon Mar 30 2020 01:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36011 * 116.99937 * 2 1 4 4 C 1.38707 * 120.02208 * 0.25262 * 3 2 1 5 5 C 1.38768 * 120.53278 * 180.29055 * 4 3 2 6 6 C 1.36490 * 120.58560 * 359.71362 * 5 4 3 7 7 C 1.40773 * 120.02280 * 0.02839 * 6 5 4 8 8 C 1.41174 * 120.26377 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00023 * 152.36283 * 8 7 6 10 10 C 1.39922 * 120.00132 * 332.34851 * 8 7 6 11 11 N 1.30874 * 120.00070 * 160.18485 * 10 8 7 12 12 Si 1.86805 * 120.00165 * 340.19259 * 10 8 7 13 13 H 1.48501 * 109.46743 * 95.12086 * 12 10 8 14 14 H 1.48494 * 109.47041 * 215.12002 * 12 10 8 15 15 H 1.48499 * 109.46717 * 335.12357 * 12 10 8 16 16 C 1.38881 * 120.01907 * 180.02562 * 3 2 1 17 17 O 1.35742 * 120.28414 * 359.97438 * 16 3 2 18 18 C 1.42896 * 117.00111 * 277.76583 * 17 16 3 19 19 H 1.09002 * 109.47421 * 33.28069 * 18 17 16 20 20 C 1.53004 * 109.47578 * 273.27633 * 18 17 16 21 21 C 1.53002 * 109.47094 * 153.27638 * 18 17 16 22 22 Cl 1.80302 * 109.47216 * 295.00282 * 21 18 17 23 23 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47047 * 300.00158 * 1 2 3 25 25 H 1.08994 * 109.47341 * 60.00418 * 1 2 3 26 26 H 1.07993 * 119.73050 * 359.97438 * 4 3 2 27 27 H 1.08009 * 119.70924 * 179.69872 * 5 4 3 28 28 H 1.08004 * 119.98716 * 180.02562 * 6 5 4 29 29 H 0.96996 * 120.00227 * 179.97438 * 11 10 8 30 30 H 1.08999 * 109.47055 * 304.31266 * 20 18 17 31 31 H 1.09005 * 109.46876 * 64.30734 * 20 18 17 32 32 H 1.08996 * 109.47259 * 184.31036 * 20 18 17 33 33 H 1.08997 * 109.47101 * 55.00335 * 21 18 17 34 34 H 1.09000 * 109.47287 * 174.99898 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2914 2.3754 0.0053 5 6 1.9103 3.6175 -0.0007 6 6 3.2717 3.7150 -0.0061 7 6 4.0614 2.5496 -0.0061 8 6 5.4699 2.6445 -0.0111 9 1 6.0659 1.8552 0.4225 10 6 6.0938 3.7613 -0.5780 11 7 7.3287 4.0537 -0.2581 12 14 5.1642 4.8350 -1.7915 13 1 4.5584 5.9843 -1.0723 14 1 6.1021 5.3378 -2.8271 15 1 4.0931 4.0362 -2.4395 16 6 3.4333 1.2850 -0.0005 17 8 4.1786 0.1505 -0.0005 18 6 4.3915 -0.4858 1.2611 19 1 3.5145 -0.3436 1.8924 20 6 5.6157 0.1292 1.9425 21 6 4.6265 -1.9821 1.0443 22 17 3.1304 -2.7349 0.3767 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 0.2132 2.3143 0.0090 27 1 1.3094 4.5150 -0.0014 28 1 3.7433 4.6866 -0.0103 29 1 7.7614 4.8276 -0.6514 30 1 6.4767 0.0550 1.2783 31 1 5.4185 1.1777 2.1660 32 1 5.8237 -0.4069 2.8684 33 1 5.4484 -2.1229 0.3424 34 1 4.8765 -2.4521 1.9954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225841614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:24 Heat of formation + Delta-G solvation = -87.739956 kcal Electronic energy + Delta-G solvation = -19282.642450 eV Core-core repulsion = 16206.146915 eV Total energy + Delta-G solvation = -3076.495535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97575 -39.02591 -37.87823 -36.61087 -35.36356 -33.55357 -31.92342 -30.20763 -28.12344 -27.67228 -26.70186 -23.37573 -22.62747 -21.82453 -19.65479 -18.80470 -17.56257 -17.17411 -16.76518 -16.61324 -16.04038 -15.76510 -15.37625 -15.09335 -14.60926 -14.34033 -14.08118 -13.88981 -13.58014 -13.30970 -13.20196 -12.95155 -12.64215 -12.45078 -12.20809 -12.17306 -11.83339 -11.55143 -11.48227 -11.18307 -11.11248 -11.07711 -10.35382 -9.41596 -8.91672 -8.74438 -6.44082 0.65933 0.86946 1.27619 1.40869 1.48063 1.50964 2.13573 2.55742 2.65996 2.99425 3.53550 3.87228 4.14082 4.25852 4.27237 4.36443 4.48340 4.49168 4.53950 4.60728 4.66653 4.75715 4.83140 4.96642 5.03568 5.06664 5.31787 5.39502 5.66445 5.77817 5.93698 5.98011 6.34909 6.55409 6.71993 6.81383 7.29379 8.13826 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.008259 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.552709 B = 3389.295616 C = 4487.538223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.317 6.317 3 C 0.138 3.862 4 C -0.314 4.314 5 C -0.049 4.049 6 C -0.276 4.276 7 C 0.088 3.912 8 C -0.456 4.456 9 H 0.088 0.912 10 C 0.053 3.947 11 N -0.832 5.832 12 Si 0.959 3.041 13 H -0.256 1.256 14 H -0.280 1.280 15 H -0.260 1.260 16 C -0.062 4.062 17 O -0.313 6.313 18 C 0.077 3.923 19 H 0.052 0.948 20 C -0.164 4.164 21 C -0.017 4.017 22 Cl -0.189 7.189 23 H 0.109 0.891 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.295 0.705 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 -6.322 2.684 10.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.230 6.230 3 C 0.092 3.908 4 C -0.333 4.333 5 C -0.067 4.067 6 C -0.296 4.296 7 C 0.084 3.916 8 C -0.484 4.484 9 H 0.106 0.894 10 C -0.164 4.164 11 N -0.457 5.457 12 Si 0.783 3.217 13 H -0.181 1.181 14 H -0.207 1.207 15 H -0.184 1.184 16 C -0.108 4.108 17 O -0.230 6.230 18 C 0.021 3.979 19 H 0.071 0.929 20 C -0.221 4.221 21 C -0.080 4.080 22 Cl -0.163 7.163 23 H 0.127 0.873 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.154 0.846 27 H 0.149 0.851 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.687 -6.550 2.490 10.402 hybrid contribution -0.183 0.867 -0.263 0.924 sum -7.871 -5.683 2.227 9.960 Atomic orbital electron populations 1.23146 0.78186 1.04214 1.01537 1.86177 1.21936 1.26330 1.88576 1.19422 0.91263 0.85018 0.95135 1.20759 0.99374 0.91343 1.21848 1.20538 0.93810 0.97337 0.94991 1.20748 0.94648 0.96795 1.17376 1.17892 0.93695 0.90619 0.89363 1.19658 0.91092 1.04484 1.33143 0.89427 1.26778 0.95524 0.97164 0.96913 1.69722 1.14121 1.25513 1.36360 0.85604 0.78632 0.78880 0.78547 1.18120 1.20696 1.18421 1.18140 0.86051 0.85720 1.20891 1.86047 1.71070 1.37353 1.28509 1.22563 0.97377 0.91551 0.86438 0.92950 1.22288 0.97778 1.01189 1.00855 1.24539 0.88164 0.92074 1.03219 1.98699 1.44475 1.84242 1.88868 0.87290 0.92343 0.92653 0.84606 0.85089 0.88036 0.89465 0.92721 0.93551 0.89250 0.88266 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.81 113.37 1.11 1.75 16 2 O -0.32 -11.99 10.14 -79.77 -0.81 -12.80 16 3 C 0.14 5.92 6.66 22.54 0.15 6.07 16 4 C -0.31 -12.24 9.05 22.51 0.20 -12.03 16 5 C -0.05 -1.97 9.96 21.99 0.22 -1.75 16 6 C -0.28 -12.98 7.17 22.48 0.16 -12.82 16 7 C 0.09 4.48 5.16 -21.21 -0.11 4.37 16 8 C -0.46 -24.70 8.55 23.40 0.20 -24.50 16 9 H 0.09 4.93 4.91 -2.91 -0.01 4.92 16 10 C 0.05 2.76 5.39 85.24 0.46 3.22 16 11 N -0.83 -43.95 13.93 21.83 0.30 -43.65 16 12 Si 0.96 42.59 24.51 68.60 1.68 44.27 16 13 H -0.26 -10.62 6.65 99.48 0.66 -9.96 16 14 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 15 H -0.26 -12.15 6.90 99.48 0.69 -11.47 16 16 C -0.06 -3.02 5.59 23.15 0.13 -2.89 16 17 O -0.31 -14.42 8.71 -76.76 -0.67 -15.09 16 18 C 0.08 2.84 2.85 30.60 0.09 2.92 16 19 H 0.05 1.99 7.92 -2.39 -0.02 1.97 16 20 C -0.16 -5.85 7.95 71.98 0.57 -5.28 16 21 C -0.02 -0.50 6.34 71.98 0.46 -0.04 16 22 Cl -0.19 -5.91 28.86 -2.72 -0.08 -5.99 16 23 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.06 1.41 7.65 -2.39 -0.02 1.40 16 25 H 0.05 1.39 7.67 -2.39 -0.02 1.37 16 26 H 0.14 4.33 6.27 -2.91 -0.02 4.31 16 27 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 28 H 0.10 4.71 4.53 -2.91 -0.01 4.70 16 29 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 30 H 0.05 2.07 7.56 -2.39 -0.02 2.05 16 31 H 0.05 1.96 6.98 -2.38 -0.02 1.94 16 32 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -61.29 293.70 5.12 -56.17 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.05 Total: 18.05 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 3.64 Total: -40.97 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.30 Total: -43.65 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -1.48 Total: -27.89 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.68 Total: 44.27 kcal Atomic # 17 Polarization: -5.91 SS G_CDS: -0.08 Total: -5.99 kcal Total: -61.29 5.12 -56.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.571 kcal (2) G-P(sol) polarization free energy of solvation -61.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds