Wall clock time and date at job start Mon Mar 30 2020 01:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36003 * 117.00178 * 2 1 4 4 C 1.38703 * 120.02438 * 359.97438 * 3 2 1 5 5 C 1.38772 * 120.53917 * 180.02562 * 4 3 2 6 6 C 1.36489 * 120.58439 * 0.02562 * 5 4 3 7 7 C 1.40779 * 120.01552 * 359.69838 * 6 5 4 8 8 C 1.41186 * 120.25868 * 180.27996 * 7 6 5 9 9 H 1.07995 * 119.99486 * 154.60400 * 8 7 6 10 10 C 1.39915 * 120.00179 * 334.60384 * 8 7 6 11 11 N 1.30870 * 120.00325 * 342.81354 * 10 8 7 12 12 Si 1.86797 * 119.99887 * 162.81263 * 10 8 7 13 13 H 1.48509 * 109.47221 * 90.00272 * 12 10 8 14 14 H 1.48506 * 109.47301 * 209.99952 * 12 10 8 15 15 H 1.48498 * 109.47167 * 330.00156 * 12 10 8 16 16 C 1.38887 * 120.01979 * 180.02562 * 3 2 1 17 17 O 1.35737 * 120.28456 * 359.95378 * 16 3 2 18 18 C 1.42905 * 116.99596 * 90.00353 * 17 16 3 19 19 H 1.09005 * 109.47386 * 329.99583 * 18 17 16 20 20 C 1.53000 * 109.47422 * 89.99877 * 18 17 16 21 21 C 1.52998 * 109.46945 * 209.99857 * 18 17 16 22 22 Cl 1.80310 * 109.47256 * 64.99788 * 21 18 17 23 23 H 1.09000 * 109.46615 * 299.99778 * 1 2 3 24 24 H 1.08994 * 109.47234 * 59.99430 * 1 2 3 25 25 H 1.09001 * 109.47578 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.72781 * 0.04128 * 4 3 2 27 27 H 1.08000 * 119.70678 * 179.97438 * 5 4 3 28 28 H 1.07997 * 119.99110 * 180.02562 * 6 5 4 29 29 H 0.96998 * 120.00250 * 179.97438 * 11 10 8 30 30 H 1.08990 * 109.47308 * 179.97438 * 20 18 17 31 31 H 1.09000 * 109.46940 * 299.99719 * 20 18 17 32 32 H 1.09000 * 109.46723 * 59.99818 * 20 18 17 33 33 H 1.08997 * 109.47351 * 184.99576 * 21 18 17 34 34 H 1.09005 * 109.47553 * 305.00159 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2916 2.3754 -0.0005 5 6 1.9105 3.6174 -0.0011 6 6 3.2719 3.7150 -0.0016 7 6 4.0614 2.5494 0.0048 8 6 5.4701 2.6444 0.0102 9 1 6.0639 1.8388 0.4160 10 6 6.0966 3.7821 -0.5100 11 7 5.4331 4.5944 -1.2927 12 14 7.8803 4.1416 -0.0874 13 1 8.7661 3.4991 -1.0914 14 1 8.1050 5.6096 -0.0965 15 1 8.1878 3.6021 1.2615 16 6 3.4334 1.2849 -0.0005 17 8 4.1787 0.1504 -0.0001 18 6 4.5345 -0.3925 -1.2733 19 1 3.7599 -0.1501 -2.0010 20 6 5.8670 0.2058 -1.7285 21 6 4.6700 -1.9122 -1.1598 22 17 3.0639 -2.6312 -0.7665 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 0.2132 2.3142 -0.0003 27 1 1.3096 4.5148 -0.0019 28 1 3.7435 4.6865 -0.0016 29 1 5.8673 5.3833 -1.6531 30 1 6.1386 -0.2086 -2.6993 31 1 5.7705 1.2885 -1.8094 32 1 6.6415 -0.0366 -1.0009 33 1 5.0271 -2.3169 -2.1067 34 1 5.3803 -2.1557 -0.3696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842445.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:27 Heat of formation + Delta-G solvation = -88.268630 kcal Electronic energy + Delta-G solvation = -19291.200711 eV Core-core repulsion = 16214.682251 eV Total energy + Delta-G solvation = -3076.518460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80184 -38.95821 -37.69914 -36.56765 -35.31345 -33.44954 -31.27257 -30.00942 -28.07070 -27.55208 -26.78434 -23.13967 -22.55985 -21.73677 -19.56178 -18.45701 -17.51203 -17.15529 -16.59287 -16.41007 -15.92130 -15.60252 -15.34744 -14.83959 -14.52395 -14.37837 -13.83355 -13.54115 -13.49467 -13.28777 -13.00641 -12.66837 -12.57107 -12.34455 -12.27604 -12.03984 -11.84240 -11.60563 -11.48182 -11.15628 -11.07831 -10.90826 -10.28784 -9.27948 -8.71712 -8.54085 -6.29567 0.85139 1.10590 1.40701 1.49692 1.51691 1.56087 2.20532 2.68184 2.78821 3.09281 3.72047 3.96717 4.20584 4.35178 4.35598 4.47173 4.48628 4.54043 4.62872 4.69970 4.76671 4.92201 5.05820 5.10031 5.17533 5.30315 5.40872 5.60215 5.80870 5.96142 6.08638 6.16666 6.54275 6.72777 6.85879 6.95386 7.41741 8.30216 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.008244 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.262397 B = 3395.726164 C = 4697.142481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.131 3.869 4 C -0.322 4.322 5 C -0.078 4.078 6 C -0.207 4.207 7 C 0.101 3.899 8 C -0.452 4.452 9 H 0.080 0.920 10 C 0.042 3.958 11 N -0.812 5.812 12 Si 0.970 3.030 13 H -0.259 1.259 14 H -0.267 1.267 15 H -0.262 1.262 16 C -0.079 4.079 17 O -0.313 6.313 18 C 0.081 3.919 19 H 0.038 0.962 20 C -0.170 4.170 21 C -0.018 4.018 22 Cl -0.192 7.192 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.108 0.892 26 H 0.124 0.876 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.290 0.710 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.130 0.870 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 -6.699 -1.718 6.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.085 3.915 4 C -0.342 4.342 5 C -0.097 4.097 6 C -0.227 4.227 7 C 0.098 3.902 8 C -0.480 4.480 9 H 0.098 0.902 10 C -0.175 4.175 11 N -0.437 5.437 12 Si 0.791 3.209 13 H -0.183 1.183 14 H -0.192 1.192 15 H -0.186 1.186 16 C -0.125 4.125 17 O -0.230 6.230 18 C 0.025 3.975 19 H 0.057 0.943 20 C -0.227 4.227 21 C -0.081 4.081 22 Cl -0.166 7.166 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.126 0.874 26 H 0.142 0.858 27 H 0.133 0.867 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.893 -6.838 -1.690 7.100 hybrid contribution 0.173 0.747 -0.131 0.778 sum -0.719 -6.092 -1.821 6.399 Atomic orbital electron populations 1.23073 0.78758 1.03882 1.01157 1.86162 1.21443 1.26612 1.88889 1.19350 0.91388 0.84589 0.96162 1.20626 0.98719 0.91739 1.23084 1.20511 0.94597 0.96518 0.98050 1.20918 0.93059 0.98303 1.10422 1.17962 0.94490 0.89874 0.87897 1.19535 0.91444 1.02725 1.34301 0.90232 1.26668 1.04483 0.94289 0.92052 1.69893 1.40250 1.11742 1.21779 0.85364 0.77002 0.78448 0.80042 1.18300 1.19182 1.18552 1.18049 0.85839 0.86382 1.22227 1.85990 1.70584 1.39039 1.27357 1.22479 0.96435 0.91980 0.86650 0.94349 1.22380 0.96454 1.02771 1.01099 1.24600 0.85567 0.92488 1.05425 1.98701 1.36407 1.85603 1.95872 0.92869 0.93018 0.87372 0.85787 0.86743 0.87475 0.89942 0.90525 0.91999 0.91947 0.85240 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.81 113.37 1.11 1.92 16 2 O -0.32 -13.18 9.88 -79.68 -0.79 -13.97 16 3 C 0.13 6.14 6.69 22.54 0.15 6.29 16 4 C -0.32 -14.23 9.05 22.51 0.20 -14.03 16 5 C -0.08 -3.61 9.96 21.99 0.22 -3.39 16 6 C -0.21 -10.72 8.63 22.48 0.19 -10.53 16 7 C 0.10 5.36 5.55 -21.21 -0.12 5.24 16 8 C -0.45 -23.09 5.85 23.40 0.14 -22.95 16 9 H 0.08 4.07 7.22 -2.91 -0.02 4.05 16 10 C 0.04 1.98 5.14 85.24 0.44 2.42 16 11 N -0.81 -40.03 10.98 21.82 0.24 -39.79 16 12 Si 0.97 36.46 29.59 68.60 2.03 38.49 16 13 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 14 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 15 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 16 C -0.08 -4.03 5.61 23.15 0.13 -3.90 16 17 O -0.31 -14.66 8.70 -76.70 -0.67 -15.33 16 18 C 0.08 3.12 2.86 30.59 0.09 3.21 16 19 H 0.04 1.61 7.91 -2.38 -0.02 1.60 16 20 C -0.17 -6.15 8.44 71.98 0.61 -5.54 16 21 C -0.02 -0.54 6.34 71.98 0.46 -0.09 16 22 Cl -0.19 -6.29 28.59 -2.72 -0.08 -6.37 16 23 H 0.05 1.53 7.66 -2.39 -0.02 1.51 16 24 H 0.05 1.49 7.66 -2.39 -0.02 1.47 16 25 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.12 4.67 6.27 -2.91 -0.02 4.66 16 27 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 28 H 0.11 5.70 6.20 -2.91 -0.02 5.68 16 29 H 0.29 12.92 8.30 -92.71 -0.77 12.15 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 2.74 5.79 -2.39 -0.01 2.72 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 Total: -1.00 -59.29 298.76 5.46 -53.83 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 1.10 Total: 24.47 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 3.62 Total: -41.34 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.24 Total: -39.79 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.45 Total: -29.29 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Atomic # 17 Polarization: -6.29 SS G_CDS: -0.08 Total: -6.37 kcal Total: -59.29 5.46 -53.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842445.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.443 kcal (2) G-P(sol) polarization free energy of solvation -59.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds