Wall clock time and date at job start Mon Mar 30 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38134 * 120.00197 * 2 1 4 4 C 1.38697 * 119.99984 * 179.97438 * 3 2 1 5 5 O 1.35985 * 119.99914 * 179.97438 * 4 3 2 6 6 C 1.38697 * 119.99856 * 0.26372 * 4 3 2 7 7 C 1.38135 * 120.00185 * 359.48759 * 6 4 3 8 8 C 1.50698 * 120.00118 * 180.26002 * 7 6 4 9 9 C 1.38697 * 119.99729 * 0.48301 * 7 6 4 10 10 O 1.35977 * 119.99911 * 179.76792 * 9 7 6 11 11 C 1.42900 * 117.00227 * 287.71034 * 10 9 7 12 12 H 1.08998 * 109.46999 * 33.07796 * 11 10 9 13 13 C 1.50704 * 109.47266 * 153.07464 * 11 10 9 14 14 H 1.08005 * 119.99550 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00368 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99278 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00231 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46965 * 60.00429 * 17 15 13 19 19 H 1.48500 * 109.47067 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47317 * 300.00419 * 17 15 13 21 21 C 1.53001 * 109.47383 * 273.07497 * 11 10 9 22 22 Cl 1.80298 * 109.46710 * 67.44048 * 21 11 10 23 23 H 1.09000 * 109.47214 * 84.86667 * 1 2 3 24 24 H 1.08997 * 109.47368 * 204.86913 * 1 2 3 25 25 H 1.09000 * 109.46450 * 324.86927 * 1 2 3 26 26 H 1.07997 * 120.00176 * 359.97438 * 3 2 1 27 27 H 0.96701 * 113.99648 * 90.00569 * 5 4 3 28 28 H 1.08002 * 120.00153 * 179.72208 * 6 4 3 29 29 H 1.09004 * 109.46784 * 270.23253 * 8 7 6 30 30 H 1.09002 * 109.47257 * 30.22712 * 8 7 6 31 31 H 1.08995 * 109.47218 * 150.23074 * 8 7 6 32 32 H 0.97008 * 119.99409 * 179.97438 * 16 15 13 33 33 H 1.08993 * 109.47233 * 187.43567 * 21 11 10 34 34 H 1.08992 * 109.47062 * 307.44212 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1962 0.0000 4 6 3.5847 1.1962 0.0005 5 8 4.2647 2.3739 0.0000 6 6 4.2781 -0.0050 -0.0045 7 6 3.5874 -1.2013 0.0007 8 6 4.3409 -2.5064 0.0012 9 6 2.2005 -1.2012 0.0008 10 8 1.5206 -2.3788 0.0012 11 6 1.5315 -3.1346 -1.2115 12 1 2.4836 -2.9890 -1.7218 13 6 1.3502 -4.5966 -0.8939 14 1 1.2375 -4.9165 0.1315 15 6 1.3273 -5.5257 -1.9124 16 7 1.4640 -5.1361 -3.1610 17 14 1.1019 -7.3378 -1.5187 18 1 -0.1953 -7.5356 -0.8234 19 1 1.1134 -8.1232 -2.7789 20 1 2.2089 -7.7950 -0.6408 21 6 0.3908 -2.6641 -2.1162 22 17 0.7209 -0.9815 -2.6735 23 1 -0.3633 0.0919 -1.0235 24 1 -0.3634 -0.9323 0.4322 25 1 -0.3632 0.8405 0.5914 26 1 1.6578 2.1316 -0.0004 27 1 4.4610 2.7150 0.8833 28 1 5.3581 -0.0051 -0.0086 29 1 4.5226 -2.8213 -1.0264 30 1 5.2933 -2.3759 0.5150 31 1 3.7518 -3.2658 0.5153 32 1 1.4482 -5.7898 -3.8776 33 1 0.3159 -3.3247 -2.9798 34 1 -0.5463 -2.6853 -1.5600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225964110.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:47 Heat of formation + Delta-G solvation = -81.152776 kcal Electronic energy + Delta-G solvation = -19203.999213 eV Core-core repulsion = 16127.789320 eV Total energy + Delta-G solvation = -3076.209893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.82201 -37.84142 -35.73707 -34.74757 -33.34286 -33.07202 -29.85506 -29.07758 -26.35550 -26.19478 -25.24419 -21.92003 -20.79410 -20.43345 -17.50215 -17.02863 -16.75213 -16.06525 -15.08497 -14.85807 -14.19201 -13.67684 -13.42038 -13.13636 -12.84323 -12.61786 -12.56672 -12.30993 -12.02839 -11.98012 -11.74814 -11.35053 -11.17421 -11.05965 -10.92951 -10.60881 -10.47885 -10.26458 -9.89163 -9.38266 -9.21130 -8.85647 -8.60221 -8.15315 -7.51277 -6.39288 -4.47235 1.64658 1.76000 3.15070 3.21339 3.23482 3.45570 3.86346 4.16303 4.47527 4.87288 4.98149 5.25194 5.27751 5.56980 5.85477 5.89232 6.01320 6.12989 6.21682 6.24157 6.27095 6.29346 6.39882 6.51970 6.77453 6.78028 6.81987 6.88859 7.08419 7.17819 7.26791 7.57221 7.83693 7.90538 8.45461 8.77870 9.21124 10.67266 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.006709 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.677434 B = 4172.640564 C = 4693.393945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.143 4.143 4 C 0.080 3.920 5 O -0.502 6.502 6 C -0.141 4.141 7 C -0.099 4.099 8 C -0.111 4.111 9 C 0.121 3.879 10 O -0.334 6.334 11 C 0.223 3.777 12 H 0.040 0.960 13 C -0.518 4.518 14 H 0.074 0.926 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.913 3.087 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.039 4.039 22 Cl -0.239 7.239 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.121 0.879 27 H 0.380 0.620 28 H 0.122 0.878 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.271 0.729 33 H 0.130 0.870 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 7.895 5.334 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.069 4.069 3 C -0.161 4.161 4 C 0.036 3.964 5 O -0.311 6.311 6 C -0.160 4.160 7 C -0.099 4.099 8 C -0.167 4.167 9 C 0.076 3.924 10 O -0.251 6.251 11 C 0.169 3.831 12 H 0.058 0.942 13 C -0.556 4.556 14 H 0.092 0.908 15 C -0.140 4.140 16 N -0.526 5.526 17 Si 0.740 3.260 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.102 4.102 22 Cl -0.213 7.213 23 H 0.102 0.898 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.139 0.861 27 H 0.234 0.766 28 H 0.140 0.860 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.480 7.774 4.613 9.160 hybrid contribution 0.049 -0.634 0.284 0.697 sum 1.529 7.139 4.897 8.792 Atomic orbital electron populations 1.20973 0.90921 1.02203 1.03370 1.19787 0.96598 0.91464 0.99010 1.20967 0.93111 0.97612 1.04448 1.18257 0.89787 0.84708 1.03602 1.84850 1.76661 1.36658 1.32896 1.21000 0.99666 0.91132 1.04185 1.20154 0.93596 0.95571 1.00629 1.20733 0.98853 0.94308 1.02838 1.18486 0.89202 0.86676 0.98035 1.85993 1.71584 1.29572 1.37970 1.20332 0.94153 0.89317 0.79278 0.94223 1.20973 1.51577 0.88420 0.94610 0.90752 1.24973 0.94227 1.00091 0.94675 1.69815 1.48429 1.35244 0.99089 0.86289 0.79155 0.82757 0.77813 1.19815 1.20954 1.19774 1.25833 1.01770 0.79211 1.03367 1.98628 1.96651 1.33930 1.92091 0.89758 0.90880 0.92928 0.86086 0.76562 0.86042 0.90976 0.92478 0.89963 0.91873 0.85200 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.11 36.01 0.33 -1.65 16 2 C -0.07 -1.24 4.44 -104.49 -0.46 -1.71 16 3 C -0.14 -2.37 9.66 -39.45 -0.38 -2.76 16 4 C 0.08 1.31 6.70 -39.24 -0.26 1.05 16 5 O -0.50 -6.99 13.51 -19.69 -0.27 -7.26 16 6 C -0.14 -2.38 9.64 -39.45 -0.38 -2.76 16 7 C -0.10 -1.87 5.71 -104.49 -0.60 -2.46 16 8 C -0.11 -1.99 8.67 36.00 0.31 -1.68 16 9 C 0.12 2.45 4.76 -39.24 -0.19 2.26 16 10 O -0.33 -7.52 7.91 -19.67 -0.16 -7.67 16 11 C 0.22 5.34 1.79 -27.88 -0.05 5.29 16 12 H 0.04 1.03 6.45 -51.93 -0.34 0.70 16 13 C -0.52 -13.18 8.89 -34.44 -0.31 -13.48 16 14 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 15 C 0.06 1.59 5.28 -17.82 -0.09 1.50 16 16 N -0.89 -23.10 11.29 55.43 0.63 -22.47 16 17 Si 0.91 19.69 29.54 -169.99 -5.02 14.67 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 21 C -0.04 -0.89 6.19 37.16 0.23 -0.66 16 22 Cl -0.24 -4.97 23.13 -51.86 -1.20 -6.17 16 23 H 0.08 1.45 5.63 -51.93 -0.29 1.16 16 24 H 0.07 1.29 7.37 -51.93 -0.38 0.91 16 25 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 26 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.38 3.27 9.06 45.56 0.41 3.68 16 28 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.07 1.36 7.61 -51.93 -0.40 0.97 16 30 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 31 H 0.08 1.60 7.42 -51.93 -0.39 1.22 16 32 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.13 3.20 5.90 -51.93 -0.31 2.90 16 34 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -27.30 293.56 -6.78 -34.08 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.34 Total: 7.45 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -1.85 Total: -17.06 kcal Atomic # 7 Polarization: -23.10 SS G_CDS: 0.63 Total: -22.47 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.42 Total: -14.93 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 17 Polarization: -4.97 SS G_CDS: -1.20 Total: -6.17 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.30 -6.78 -34.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225964110.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.069 kcal (2) G-P(sol) polarization free energy of solvation -27.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds