Wall clock time and date at job start Mon Mar 30 2020 00:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38134 * 120.00197 * 2 1 4 4 C 1.38697 * 119.99984 * 179.97438 * 3 2 1 5 5 O 1.35985 * 119.99914 * 179.97438 * 4 3 2 6 6 C 1.38697 * 119.99856 * 0.26372 * 4 3 2 7 7 C 1.38135 * 120.00185 * 359.48759 * 6 4 3 8 8 C 1.50698 * 120.00118 * 180.26002 * 7 6 4 9 9 C 1.38697 * 119.99729 * 0.48301 * 7 6 4 10 10 O 1.35977 * 119.99911 * 179.76792 * 9 7 6 11 11 C 1.42900 * 117.00227 * 287.71034 * 10 9 7 12 12 H 1.08998 * 109.46999 * 33.07796 * 11 10 9 13 13 C 1.50704 * 109.47266 * 153.07464 * 11 10 9 14 14 H 1.08005 * 119.99550 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00368 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99278 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00231 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46965 * 60.00429 * 17 15 13 19 19 H 1.48500 * 109.47067 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47317 * 300.00419 * 17 15 13 21 21 C 1.53001 * 109.47383 * 273.07497 * 11 10 9 22 22 Cl 1.80298 * 109.46710 * 67.44048 * 21 11 10 23 23 H 1.09000 * 109.47214 * 84.86667 * 1 2 3 24 24 H 1.08997 * 109.47368 * 204.86913 * 1 2 3 25 25 H 1.09000 * 109.46450 * 324.86927 * 1 2 3 26 26 H 1.07997 * 120.00176 * 359.97438 * 3 2 1 27 27 H 0.96701 * 113.99648 * 90.00569 * 5 4 3 28 28 H 1.08002 * 120.00153 * 179.72208 * 6 4 3 29 29 H 1.09004 * 109.46784 * 270.23253 * 8 7 6 30 30 H 1.09002 * 109.47257 * 30.22712 * 8 7 6 31 31 H 1.08995 * 109.47218 * 150.23074 * 8 7 6 32 32 H 0.97008 * 119.99409 * 179.97438 * 16 15 13 33 33 H 1.08993 * 109.47233 * 187.43567 * 21 11 10 34 34 H 1.08992 * 109.47062 * 307.44212 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1962 0.0000 4 6 3.5847 1.1962 0.0005 5 8 4.2647 2.3739 0.0000 6 6 4.2781 -0.0050 -0.0045 7 6 3.5874 -1.2013 0.0007 8 6 4.3409 -2.5064 0.0012 9 6 2.2005 -1.2012 0.0008 10 8 1.5206 -2.3788 0.0012 11 6 1.5315 -3.1346 -1.2115 12 1 2.4836 -2.9890 -1.7218 13 6 1.3502 -4.5966 -0.8939 14 1 1.2375 -4.9165 0.1315 15 6 1.3273 -5.5257 -1.9124 16 7 1.4640 -5.1361 -3.1610 17 14 1.1019 -7.3378 -1.5187 18 1 -0.1953 -7.5356 -0.8234 19 1 1.1134 -8.1232 -2.7789 20 1 2.2089 -7.7950 -0.6408 21 6 0.3908 -2.6641 -2.1162 22 17 0.7209 -0.9815 -2.6735 23 1 -0.3633 0.0919 -1.0235 24 1 -0.3634 -0.9323 0.4322 25 1 -0.3632 0.8405 0.5914 26 1 1.6578 2.1316 -0.0004 27 1 4.4610 2.7150 0.8833 28 1 5.3581 -0.0051 -0.0086 29 1 4.5226 -2.8213 -1.0264 30 1 5.2933 -2.3759 0.5150 31 1 3.7518 -3.2658 0.5153 32 1 1.4482 -5.7898 -3.8776 33 1 0.3159 -3.3247 -2.9798 34 1 -0.5463 -2.6853 -1.5600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225964110.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:46 Heat of formation + Delta-G solvation = -97.173873 kcal Electronic energy + Delta-G solvation = -19204.693940 eV Core-core repulsion = 16127.789320 eV Total energy + Delta-G solvation = -3076.904620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23755 -39.25103 -37.18069 -36.45073 -35.18353 -34.47357 -31.49168 -30.62667 -27.76399 -27.60535 -27.14117 -23.52528 -22.31631 -21.83598 -18.84732 -18.71469 -18.41159 -17.48575 -16.89851 -16.08919 -15.82336 -15.30033 -14.91550 -14.73156 -14.33773 -14.04490 -13.92365 -13.80598 -13.67013 -13.61862 -13.27774 -13.00038 -12.78950 -12.63218 -12.47303 -12.26369 -12.02044 -11.73071 -11.44356 -11.13194 -10.95909 -10.59965 -10.42016 -9.51152 -8.96305 -8.31731 -6.47168 0.27111 0.40105 1.42624 1.44874 1.53893 1.66249 2.31143 2.53976 3.00719 3.26249 3.39404 3.90758 3.94545 4.29402 4.39290 4.48220 4.52579 4.58656 4.69109 4.74546 4.77867 4.90616 4.93234 5.01826 5.19944 5.31033 5.42342 5.46159 5.48042 5.58748 5.74872 5.85089 5.93696 6.56735 6.90110 7.02714 7.27581 8.74184 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.006709 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.677434 B = 4172.640564 C = 4693.393945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 C -0.145 4.145 4 C 0.095 3.905 5 O -0.504 6.504 6 C -0.145 4.145 7 C -0.113 4.113 8 C -0.104 4.104 9 C 0.082 3.918 10 O -0.344 6.344 11 C 0.234 3.766 12 H 0.012 0.988 13 C -0.539 4.539 14 H 0.065 0.935 15 C 0.026 3.974 16 N -0.911 5.911 17 Si 0.973 3.027 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.270 1.270 21 C -0.031 4.031 22 Cl -0.220 7.220 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.146 0.854 27 H 0.408 0.592 28 H 0.144 0.856 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.273 0.727 33 H 0.110 0.890 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 9.217 5.942 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.164 4.164 4 C 0.051 3.949 5 O -0.317 6.317 6 C -0.164 4.164 7 C -0.113 4.113 8 C -0.160 4.160 9 C 0.038 3.962 10 O -0.262 6.262 11 C 0.179 3.821 12 H 0.030 0.970 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.175 4.175 16 N -0.549 5.549 17 Si 0.797 3.203 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.195 1.195 21 C -0.094 4.094 22 Cl -0.194 7.194 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.164 0.836 27 H 0.267 0.733 28 H 0.162 0.838 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.918 9.126 5.247 10.700 hybrid contribution 0.000 -0.846 0.123 0.855 sum 1.918 8.280 5.370 10.053 Atomic orbital electron populations 1.20940 0.90174 1.02648 1.03343 1.19975 0.97342 0.91387 0.98747 1.21232 0.93544 0.97840 1.03766 1.18306 0.89824 0.85311 1.01449 1.84782 1.76166 1.35380 1.35323 1.21221 1.00821 0.90588 1.03728 1.20317 0.93407 0.96565 1.01046 1.20641 0.99959 0.93620 1.01787 1.18802 0.90022 0.86437 1.00982 1.85965 1.72216 1.30789 1.37226 1.19986 0.92968 0.89169 0.79931 0.97022 1.21184 1.52230 0.89800 0.94404 0.91635 1.25691 0.93596 1.03795 0.94392 1.69915 1.48785 1.36442 0.99774 0.85370 0.79186 0.78052 0.77730 1.19253 1.20392 1.19473 1.25494 1.01524 0.80004 1.02337 1.98618 1.96651 1.32243 1.91931 0.90380 0.92523 0.89903 0.83637 0.73341 0.83834 0.92695 0.89280 0.92355 0.91727 0.87155 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.71 9.11 71.24 0.65 -3.06 16 2 C -0.07 -2.62 4.44 -19.78 -0.09 -2.71 16 3 C -0.15 -4.45 9.66 22.35 0.22 -4.23 16 4 C 0.10 2.83 6.70 22.49 0.15 2.98 16 5 O -0.50 -12.02 13.51 -93.39 -1.26 -13.28 16 6 C -0.15 -4.60 9.64 22.35 0.22 -4.38 16 7 C -0.11 -4.22 5.71 -19.78 -0.11 -4.34 16 8 C -0.10 -3.77 8.67 71.24 0.62 -3.15 16 9 C 0.08 3.32 4.76 22.49 0.11 3.43 16 10 O -0.34 -15.97 7.91 -93.29 -0.74 -16.71 16 11 C 0.23 11.58 1.79 29.85 0.05 11.63 16 12 H 0.01 0.65 6.45 -2.39 -0.02 0.64 16 13 C -0.54 -28.23 8.89 25.60 0.23 -28.00 16 14 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 15 C 0.03 1.33 5.28 84.66 0.45 1.78 16 16 N -0.91 -48.28 11.29 21.45 0.24 -48.04 16 17 Si 0.97 40.56 29.54 68.60 2.03 42.59 16 18 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 C -0.03 -1.43 6.19 71.98 0.45 -0.98 16 22 Cl -0.22 -9.15 23.13 -2.72 -0.06 -9.22 16 23 H 0.08 2.61 5.63 -2.39 -0.01 2.59 16 24 H 0.06 2.00 7.37 -2.39 -0.02 1.98 16 25 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 26 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 27 H 0.41 5.19 9.06 -74.06 -0.67 4.52 16 28 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.05 2.15 7.61 -2.39 -0.02 2.13 16 30 H 0.09 2.56 8.09 -2.39 -0.02 2.54 16 31 H 0.06 2.37 7.42 -2.39 -0.02 2.35 16 32 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 33 H 0.11 5.60 5.90 -2.39 -0.01 5.58 16 34 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -58.74 293.56 3.59 -55.15 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.45 Total: 20.54 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 2.93 Total: -31.03 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.24 Total: -48.04 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -2.00 Total: -30.00 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 17 Polarization: -9.15 SS G_CDS: -0.06 Total: -9.22 kcal Total: -58.74 3.59 -55.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225964110.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.024 kcal (2) G-P(sol) polarization free energy of solvation -58.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds