Wall clock time and date at job start Mon Mar 30 2020 02:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99998 * 2 1 4 4 H 1.48507 * 109.46697 * 239.99725 * 3 2 1 5 5 H 1.48495 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47101 * 120.00307 * 3 2 1 7 7 C 1.37876 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00281 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47233 * 299.99869 * 9 7 2 11 11 C 1.53002 * 109.47053 * 59.99686 * 9 7 2 12 12 Cl 1.80300 * 109.47094 * 184.99840 * 11 9 7 13 13 O 1.42904 * 109.47335 * 179.97438 * 9 7 2 14 14 C 1.35992 * 116.99891 * 149.99815 * 13 9 7 15 15 N 1.31342 * 126.01973 * 359.97438 * 14 13 9 16 16 N 1.40279 * 108.24795 * 179.97438 * 15 14 13 17 17 H 0.97006 * 126.04013 * 179.97438 * 16 15 14 18 18 C 1.34344 * 107.92264 * 359.93938 * 16 15 14 19 19 C 1.35708 * 107.90786 * 0.11102 * 18 16 15 20 20 C 1.50833 * 124.13984 * 179.78455 * 19 18 16 21 21 C 1.53362 * 108.38255 * 343.54478 * 20 19 18 22 22 C 1.53108 * 109.50136 * 49.91051 * 21 20 19 23 23 C 1.50839 * 127.99224 * 180.38366 * 18 16 15 24 24 H 0.96998 * 119.99941 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47301 * 304.99992 * 11 9 7 26 26 H 1.09001 * 109.46977 * 65.00588 * 11 9 7 27 27 H 1.09008 * 109.67792 * 103.27053 * 20 19 18 28 28 H 1.08997 * 109.68298 * 223.77841 * 20 19 18 29 29 H 1.09001 * 109.46202 * 169.91468 * 21 20 19 30 30 H 1.08995 * 109.46596 * 289.89402 * 21 20 19 31 31 H 1.08994 * 109.46982 * 49.72042 * 22 21 20 32 32 H 1.09000 * 109.46642 * 169.70482 * 22 21 20 33 33 H 1.09000 * 109.68428 * 283.09973 * 23 18 16 34 34 H 1.09003 * 109.68679 * 43.66104 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5804 -1.2490 12 17 -0.6387 -4.0719 -1.1769 13 8 2.1795 -3.5854 0.0005 14 6 1.7831 -4.7365 0.6064 15 7 0.6256 -4.9421 1.1921 16 7 0.6117 -6.2537 1.6894 17 1 -0.1191 -6.6747 2.1686 18 6 1.7891 -6.8241 1.3840 19 6 2.5352 -5.9088 0.7153 20 6 3.9304 -6.1655 0.2027 21 6 4.4819 -7.4122 0.9052 22 6 3.4588 -8.5473 0.8099 23 6 2.2505 -8.2258 1.6963 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2757 -1.7048 -1.2953 26 1 1.0038 -2.6125 -2.1365 27 1 3.9008 -6.3335 -0.8739 28 1 4.5660 -5.3078 0.4230 29 1 5.4107 -7.7191 0.4242 30 1 4.6741 -7.1834 1.9534 31 1 3.1298 -8.6540 -0.2238 32 1 3.9171 -9.4784 1.1431 33 1 2.5391 -8.2922 2.7453 34 1 1.4456 -8.9316 1.4912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227103645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:48 Heat of formation + Delta-G solvation = 7.500022 kcal Electronic energy + Delta-G solvation = -18872.748404 eV Core-core repulsion = 15832.675536 eV Total energy + Delta-G solvation = -3040.072868 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96722 -37.53028 -36.11414 -34.58445 -33.35357 -31.56607 -29.33494 -29.02104 -28.41560 -25.20953 -23.31008 -22.37757 -21.47348 -19.79464 -18.43018 -17.33344 -16.43547 -15.95859 -15.31679 -14.66758 -14.36445 -13.80757 -13.54247 -13.48490 -13.18985 -12.82846 -12.71687 -12.63039 -11.88844 -11.68851 -11.54624 -11.08449 -10.96349 -10.81772 -10.72334 -10.55303 -10.44339 -10.29046 -9.78536 -9.51035 -9.22328 -9.07739 -8.58363 -7.90341 -7.57410 -6.31887 -4.39821 2.39409 3.20881 3.25117 3.26938 3.31771 3.57752 3.62213 4.12221 4.44056 4.86358 4.91365 4.92867 5.04142 5.34099 5.49618 5.56551 5.61396 5.66757 5.83054 5.94052 6.10789 6.21306 6.35703 6.46534 6.47918 6.49938 6.67266 6.77960 7.12982 7.34097 7.62771 7.81405 7.87480 8.32346 8.51971 8.84050 9.27328 10.75140 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.005863 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.951304 B = 4774.549018 C = 5426.615875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.074 0.926 9 C 0.214 3.786 10 H 0.054 0.946 11 C -0.033 4.033 12 Cl -0.235 7.235 13 O -0.291 6.291 14 C 0.289 3.711 15 N -0.316 5.316 16 N -0.472 5.472 17 H 0.433 0.567 18 C 0.089 3.911 19 C -0.247 4.247 20 C -0.033 4.033 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.053 4.053 24 H 0.271 0.729 25 H 0.130 0.870 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.406 -14.098 1.952 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.093 0.907 9 C 0.158 3.842 10 H 0.072 0.928 11 C -0.096 4.096 12 Cl -0.209 7.209 13 O -0.195 6.195 14 C 0.084 3.916 15 N -0.156 5.156 16 N -0.182 5.182 17 H 0.275 0.725 18 C -0.041 4.041 19 C -0.259 4.259 20 C -0.072 4.072 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.092 4.092 24 H 0.081 0.919 25 H 0.148 0.852 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.351 -13.368 2.052 13.933 hybrid contribution 0.306 0.423 0.013 0.522 sum 3.656 -12.945 2.065 13.609 Atomic orbital electron populations 1.69825 1.05979 1.27919 1.48744 1.24966 0.95145 0.99685 0.94144 0.86253 0.79290 0.81161 0.79076 1.19774 1.20914 1.19785 1.20986 0.94218 0.88099 1.52687 0.90748 1.20398 0.87221 0.82273 0.94287 0.92801 1.25617 0.95499 0.86915 1.01592 1.98637 1.75599 1.47579 1.99076 1.86327 1.43571 1.18542 1.71063 1.20352 0.90414 0.88248 0.92580 1.77989 1.19824 0.94817 1.23017 1.45496 1.13783 1.10759 1.48147 0.72475 1.20614 0.87576 0.95862 1.00034 1.19128 0.99806 0.92582 1.14381 1.19846 0.91362 0.97130 0.98818 1.21599 0.97717 0.95110 1.01086 1.21509 0.95101 0.98296 1.00113 1.20277 0.98337 0.89944 1.00627 0.91915 0.85238 0.91307 0.91840 0.91122 0.91810 0.91915 0.91438 0.91475 0.90178 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 11.29 55.43 0.63 -23.73 16 2 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 3 Si 0.92 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.52 -14.33 8.89 -34.44 -0.31 -14.64 16 8 H 0.07 2.03 7.81 -52.48 -0.41 1.62 16 9 C 0.21 5.65 2.29 -27.88 -0.06 5.59 16 10 H 0.05 1.57 7.30 -51.93 -0.38 1.19 16 11 C -0.03 -0.83 6.17 37.16 0.23 -0.60 16 12 Cl -0.23 -5.39 26.14 -51.86 -1.36 -6.74 16 13 O -0.29 -7.30 9.83 -19.72 -0.19 -7.50 16 14 C 0.29 6.48 6.89 -17.21 -0.12 6.36 16 15 N -0.32 -6.88 9.71 30.48 0.30 -6.59 16 16 N -0.47 -7.81 7.34 33.48 0.25 -7.57 16 17 H 0.43 5.53 8.96 -182.46 -1.64 3.90 16 18 C 0.09 1.36 7.08 -82.33 -0.58 0.78 16 19 C -0.25 -4.51 5.93 -104.91 -0.62 -5.13 16 20 C -0.03 -0.50 6.28 -27.63 -0.17 -0.68 16 21 C -0.12 -1.31 5.90 -26.49 -0.16 -1.47 16 22 C -0.11 -1.09 5.89 -26.53 -0.16 -1.25 16 23 C -0.05 -0.54 6.30 -27.67 -0.17 -0.72 16 24 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.13 3.42 5.95 -51.93 -0.31 3.11 16 26 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 27 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.70 8.11 -51.93 -0.42 0.27 16 31 H 0.07 0.70 8.11 -51.93 -0.42 0.27 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 293.64 15.07 4.43 4.43 Total: -1.00 -30.34 293.64 -8.87 -39.21 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.67 Total: 3.07 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.22 Total: -10.15 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 1.17 Total: -37.89 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.19 Total: -7.50 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -5.39 SS G_CDS: -1.36 Total: -6.74 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.34 -8.87 -39.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227103645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.706 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds