Wall clock time and date at job start Mon Mar 30 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99998 * 2 1 4 4 H 1.48507 * 109.46697 * 239.99725 * 3 2 1 5 5 H 1.48495 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47101 * 120.00307 * 3 2 1 7 7 C 1.37876 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00281 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47233 * 299.99869 * 9 7 2 11 11 C 1.53002 * 109.47053 * 59.99686 * 9 7 2 12 12 Cl 1.80300 * 109.47094 * 184.99840 * 11 9 7 13 13 O 1.42904 * 109.47335 * 179.97438 * 9 7 2 14 14 C 1.35992 * 116.99891 * 149.99815 * 13 9 7 15 15 N 1.31342 * 126.01973 * 359.97438 * 14 13 9 16 16 N 1.40279 * 108.24795 * 179.97438 * 15 14 13 17 17 H 0.97006 * 126.04013 * 179.97438 * 16 15 14 18 18 C 1.34344 * 107.92264 * 359.93938 * 16 15 14 19 19 C 1.35708 * 107.90786 * 0.11102 * 18 16 15 20 20 C 1.50833 * 124.13984 * 179.78455 * 19 18 16 21 21 C 1.53362 * 108.38255 * 343.54478 * 20 19 18 22 22 C 1.53108 * 109.50136 * 49.91051 * 21 20 19 23 23 C 1.50839 * 127.99224 * 180.38366 * 18 16 15 24 24 H 0.96998 * 119.99941 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47301 * 304.99992 * 11 9 7 26 26 H 1.09001 * 109.46977 * 65.00588 * 11 9 7 27 27 H 1.09008 * 109.67792 * 103.27053 * 20 19 18 28 28 H 1.08997 * 109.68298 * 223.77841 * 20 19 18 29 29 H 1.09001 * 109.46202 * 169.91468 * 21 20 19 30 30 H 1.08995 * 109.46596 * 289.89402 * 21 20 19 31 31 H 1.08994 * 109.46982 * 49.72042 * 22 21 20 32 32 H 1.09000 * 109.46642 * 169.70482 * 22 21 20 33 33 H 1.09000 * 109.68428 * 283.09973 * 23 18 16 34 34 H 1.09003 * 109.68679 * 43.66104 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5804 -1.2490 12 17 -0.6387 -4.0719 -1.1769 13 8 2.1795 -3.5854 0.0005 14 6 1.7831 -4.7365 0.6064 15 7 0.6256 -4.9421 1.1921 16 7 0.6117 -6.2537 1.6894 17 1 -0.1191 -6.6747 2.1686 18 6 1.7891 -6.8241 1.3840 19 6 2.5352 -5.9088 0.7153 20 6 3.9304 -6.1655 0.2027 21 6 4.4819 -7.4122 0.9052 22 6 3.4588 -8.5473 0.8099 23 6 2.2505 -8.2258 1.6963 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2757 -1.7048 -1.2953 26 1 1.0038 -2.6125 -2.1365 27 1 3.9008 -6.3335 -0.8739 28 1 4.5660 -5.3078 0.4230 29 1 5.4107 -7.7191 0.4242 30 1 4.6741 -7.1834 1.9534 31 1 3.1298 -8.6540 -0.2238 32 1 3.9171 -9.4784 1.1431 33 1 2.5391 -8.2922 2.7453 34 1 1.4456 -8.9316 1.4912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227103645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:47 Heat of formation + Delta-G solvation = -12.582290 kcal Electronic energy + Delta-G solvation = -18873.619238 eV Core-core repulsion = 15832.675536 eV Total energy + Delta-G solvation = -3040.943703 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.37002 -39.31470 -37.19478 -36.50916 -35.36645 -32.91245 -31.17352 -30.28832 -29.73994 -27.29193 -24.43744 -24.01651 -22.64978 -21.56597 -19.67655 -18.87956 -18.16723 -17.75745 -16.75306 -16.58155 -15.70075 -15.35559 -14.85283 -14.72435 -14.53935 -14.29193 -14.13002 -13.88942 -13.74207 -13.39681 -13.00882 -12.84973 -12.68429 -12.46009 -12.16688 -11.75848 -11.59088 -11.55934 -11.34342 -11.23424 -11.07613 -10.98008 -10.60703 -9.47351 -9.04464 -8.36777 -6.54615 1.07206 1.40376 1.42628 1.52672 1.64994 1.93212 1.99963 2.31313 2.81105 2.97792 3.82637 3.93400 4.11100 4.16253 4.32341 4.39942 4.44504 4.57141 4.71921 4.74649 4.84859 4.92856 5.11127 5.13065 5.22228 5.25905 5.37412 5.44833 5.51837 5.57314 5.61767 5.82108 6.48186 6.57283 6.78775 6.98834 7.20043 8.70233 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.005863 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.951304 B = 4774.549018 C = 5426.615875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.067 0.933 9 C 0.224 3.776 10 H 0.018 0.982 11 C -0.024 4.024 12 Cl -0.217 7.217 13 O -0.309 6.309 14 C 0.253 3.747 15 N -0.359 5.359 16 N -0.460 5.460 17 H 0.449 0.551 18 C 0.116 3.884 19 C -0.278 4.278 20 C -0.035 4.035 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.051 4.051 24 H 0.275 0.725 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 -16.088 2.505 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.086 0.914 9 C 0.168 3.832 10 H 0.035 0.965 11 C -0.087 4.087 12 Cl -0.191 7.191 13 O -0.214 6.214 14 C 0.049 3.951 15 N -0.200 5.200 16 N -0.173 5.173 17 H 0.295 0.705 18 C -0.015 4.015 19 C -0.289 4.289 20 C -0.073 4.073 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.089 4.089 24 H 0.085 0.915 25 H 0.132 0.868 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.181 -15.390 2.613 16.161 hybrid contribution -0.026 0.899 -0.097 0.904 sum 4.155 -14.492 2.516 15.284 Atomic orbital electron populations 1.69928 1.07321 1.29023 1.48568 1.25824 0.95975 1.02879 0.93022 0.85220 0.78148 0.76710 0.79331 1.18807 1.19872 1.19462 1.21231 0.94133 0.89357 1.54218 0.91437 1.20055 0.87078 0.82870 0.93192 0.96459 1.25295 0.95211 0.87111 1.01050 1.98625 1.75019 1.46411 1.99076 1.86249 1.43605 1.19393 1.72148 1.20799 0.91966 0.88404 0.93886 1.77832 1.20324 0.97702 1.24107 1.45507 1.14976 1.09329 1.47474 0.70518 1.21420 0.85847 0.97462 0.96808 1.19604 1.01534 0.91790 1.16008 1.19910 0.89738 0.98682 0.99007 1.21583 0.98947 0.93576 1.00771 1.21551 0.94355 0.98996 0.99835 1.20583 0.99483 0.86587 1.02260 0.91506 0.86829 0.90990 0.92353 0.93163 0.89741 0.91676 0.92067 0.87816 0.87622 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.13 11.29 21.45 0.24 -50.88 16 2 C 0.02 1.30 5.29 84.65 0.45 1.75 16 3 Si 0.98 42.48 29.54 68.60 2.03 44.50 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.55 -31.48 8.89 25.60 0.23 -31.25 16 8 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 9 C 0.22 12.45 2.29 29.85 0.07 12.52 16 10 H 0.02 1.08 7.30 -2.39 -0.02 1.07 16 11 C -0.02 -1.21 6.17 71.98 0.44 -0.77 16 12 Cl -0.22 -10.19 26.14 -2.72 -0.07 -10.26 16 13 O -0.31 -16.34 9.83 -93.46 -0.92 -17.26 16 14 C 0.25 11.76 6.89 85.12 0.59 12.35 16 15 N -0.36 -16.04 9.71 -170.63 -1.66 -17.70 16 16 N -0.46 -14.81 7.34 -47.99 -0.35 -15.16 16 17 H 0.45 10.74 8.96 -213.20 -1.91 8.83 16 18 C 0.12 3.32 7.08 41.63 0.29 3.61 16 19 C -0.28 -10.17 5.93 -20.05 -0.12 -10.29 16 20 C -0.03 -1.05 6.28 30.01 0.19 -0.86 16 21 C -0.11 -2.17 5.90 30.75 0.18 -1.99 16 22 C -0.11 -1.65 5.89 30.72 0.18 -1.47 16 23 C -0.05 -0.82 6.30 29.98 0.19 -0.63 16 24 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.11 6.23 5.95 -2.39 -0.01 6.22 16 26 H 0.07 3.59 8.14 -2.39 -0.02 3.57 16 27 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.25 8.11 -2.39 -0.02 1.24 16 31 H 0.06 1.04 8.11 -2.39 -0.02 1.02 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -69.10 293.64 1.17 -67.93 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.79 Total: 15.87 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 2.69 Total: -17.04 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -1.77 Total: -83.75 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.92 Total: -17.26 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 17 Polarization: -10.19 SS G_CDS: -0.07 Total: -10.26 kcal Total: -69.10 1.17 -67.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227103645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.352 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds