Wall clock time and date at job start Mon Mar 30 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35980 * 116.99860 * 2 1 4 4 C 1.38713 * 120.00267 * 0.02562 * 3 2 1 5 5 C 1.38115 * 120.00523 * 179.69784 * 4 3 2 6 6 C 1.38717 * 119.99506 * 0.30639 * 5 4 3 7 7 O 1.35983 * 119.99886 * 179.97438 * 6 5 4 8 8 C 1.42901 * 116.99734 * 356.73045 * 7 6 5 9 9 H 1.09001 * 109.47283 * 26.90651 * 8 7 6 10 10 C 1.50700 * 109.47235 * 146.90576 * 8 7 6 11 11 H 1.08010 * 119.99847 * 359.97438 * 10 8 7 12 12 C 1.37877 * 120.00462 * 179.97438 * 10 8 7 13 13 N 1.31519 * 119.99869 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00145 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47016 * 60.00773 * 14 12 10 16 16 H 1.48498 * 109.47007 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47472 * 300.00240 * 14 12 10 18 18 C 1.53003 * 109.47278 * 266.90529 * 8 7 6 19 19 Cl 1.80299 * 109.47091 * 65.00020 * 18 8 7 20 20 C 1.38672 * 120.00437 * 359.97438 * 6 5 4 21 21 C 1.50698 * 120.00426 * 180.02562 * 20 6 5 22 22 C 1.38156 * 119.99908 * 359.97438 * 20 6 5 23 23 H 1.09004 * 109.47403 * 299.99613 * 1 2 3 24 24 H 1.08995 * 109.47760 * 59.99941 * 1 2 3 25 25 H 1.09007 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08007 * 119.99909 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.99978 * 180.27555 * 5 4 3 28 28 H 0.96994 * 120.00441 * 180.02562 * 13 12 10 29 29 H 1.09000 * 109.47362 * 185.00139 * 18 8 7 30 30 H 1.08998 * 109.46691 * 304.99860 * 18 8 7 31 31 H 1.08992 * 109.47135 * 90.00115 * 21 20 6 32 32 H 1.09000 * 109.47383 * 210.00682 * 21 20 6 33 33 H 1.08998 * 109.46812 * 330.00370 * 21 20 6 34 34 H 1.08001 * 120.00277 * 179.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9177 3.6056 0.0068 6 6 3.3030 3.6782 0.0062 7 8 3.9203 4.8898 0.0119 8 6 3.0821 6.0453 -0.0543 9 1 2.1049 5.8099 0.3673 10 6 3.7107 7.1676 0.7308 11 1 4.6557 7.0137 1.2307 12 6 3.0796 8.3908 0.8109 13 7 1.9287 8.5781 0.2027 14 14 3.8586 9.7817 1.7846 15 1 5.1903 10.1021 1.2111 16 1 2.9876 10.9824 1.7158 17 1 4.0168 9.3661 3.2015 18 6 2.9180 6.4734 -1.5140 19 17 2.0339 5.1903 -2.4210 20 6 4.0583 2.5153 -0.0002 21 6 5.5632 2.5941 -0.0003 22 6 3.4312 1.2843 -0.0054 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2122 2.3184 0.0005 27 1 1.3294 4.5113 0.0118 28 1 1.4848 9.4387 0.2587 29 1 2.3530 7.4045 -1.5582 30 1 3.9007 6.6232 -1.9613 31 1 5.9264 2.6077 1.0273 32 1 5.9725 1.7272 -0.5190 33 1 5.8793 3.5046 -0.5094 34 1 4.0194 0.3785 -0.0109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227131302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:58 Heat of formation + Delta-G solvation = -82.283308 kcal Electronic energy + Delta-G solvation = -18724.144081 eV Core-core repulsion = 15647.885165 eV Total energy + Delta-G solvation = -3076.258917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33486 -39.86042 -37.61085 -36.49803 -35.26243 -33.48706 -31.49905 -30.40390 -27.96394 -27.36037 -27.24125 -24.50192 -22.15205 -22.06304 -19.05666 -18.68469 -18.29946 -17.38830 -16.65339 -16.56539 -16.09398 -15.69051 -15.38304 -14.85447 -14.59864 -14.29316 -14.08979 -13.80119 -13.65513 -13.35052 -13.01325 -13.00417 -12.78066 -12.70259 -12.58932 -12.43211 -12.17527 -11.78761 -11.65908 -11.34276 -11.11265 -10.71419 -10.52989 -9.68616 -8.44640 -8.34767 -6.51753 0.37615 0.64511 1.41434 1.44023 1.53265 1.61830 2.28626 2.46420 2.78166 2.86344 2.99664 3.90378 3.91107 4.22996 4.30727 4.38009 4.39824 4.42114 4.47477 4.59034 4.69483 4.74701 4.90048 4.96644 4.98726 5.11512 5.22994 5.41815 5.44461 5.53353 5.64552 5.77589 5.88636 6.44379 6.55854 6.89528 7.21395 8.70191 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.005687 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.446712 B = 4922.342157 C = 5209.572838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.078 3.922 4 C -0.177 4.177 5 C -0.163 4.163 6 C 0.089 3.911 7 O -0.322 6.322 8 C 0.212 3.788 9 H 0.029 0.971 10 C -0.547 4.547 11 H 0.067 0.933 12 C 0.027 3.973 13 N -0.910 5.910 14 Si 0.976 3.024 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.271 1.271 18 C -0.025 4.025 19 Cl -0.223 7.223 20 C -0.101 4.101 21 C -0.096 4.096 22 C -0.121 4.121 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.124 0.876 26 H 0.141 0.859 27 H 0.119 0.881 28 H 0.275 0.725 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 -11.352 -0.868 11.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.033 3.967 4 C -0.196 4.196 5 C -0.181 4.181 6 C 0.044 3.956 7 O -0.237 6.237 8 C 0.156 3.844 9 H 0.046 0.954 10 C -0.584 4.584 11 H 0.085 0.915 12 C -0.174 4.174 13 N -0.548 5.548 14 Si 0.800 3.200 15 H -0.191 1.191 16 H -0.201 1.201 17 H -0.196 1.196 18 C -0.088 4.088 19 Cl -0.197 7.197 20 C -0.101 4.101 21 C -0.153 4.153 22 C -0.140 4.140 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.142 0.858 26 H 0.158 0.842 27 H 0.137 0.863 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.619 -11.437 -0.969 11.495 hybrid contribution -0.544 1.253 0.228 1.385 sum -1.163 -10.184 -0.741 10.277 Atomic orbital electron populations 1.23261 0.77144 1.05358 1.01658 1.85999 1.22815 1.26117 1.89584 1.18872 0.92464 0.84241 1.01119 1.21093 1.00502 0.91209 1.06808 1.21190 0.94023 0.98614 1.04303 1.19137 0.91338 0.86393 0.98756 1.86066 1.37408 1.12424 1.87762 1.20218 0.91264 0.81629 0.91264 0.95369 1.21223 1.08482 0.96130 1.32572 0.91514 1.25715 0.95014 1.00615 0.96095 1.69879 1.16053 1.25917 1.42938 0.85311 0.78522 0.77304 0.78861 1.19114 1.20128 1.19598 1.25421 0.97507 0.92486 0.93414 1.98634 1.80951 1.60501 1.79631 1.19312 0.97371 0.89523 1.03941 1.20572 0.88982 1.02970 1.02749 1.20226 0.91418 0.97317 1.05027 0.92409 0.92664 0.85803 0.84180 0.86338 0.91519 0.86595 0.90730 0.90767 0.89325 0.92546 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.33 -9.12 10.50 -93.32 -0.98 -10.10 16 3 C 0.08 2.49 6.69 22.49 0.15 2.64 16 4 C -0.18 -6.05 9.03 22.35 0.20 -5.85 16 5 C -0.16 -6.58 7.04 22.36 0.16 -6.42 16 6 C 0.09 3.75 5.94 22.49 0.13 3.89 16 7 O -0.32 -15.23 8.77 -93.36 -0.82 -16.05 16 8 C 0.21 10.59 2.19 29.85 0.07 10.65 16 9 H 0.03 1.53 5.39 -2.39 -0.01 1.52 16 10 C -0.55 -28.99 8.89 25.60 0.23 -28.76 16 11 H 0.07 3.56 7.81 -2.91 -0.02 3.54 16 12 C 0.03 1.36 5.29 84.65 0.45 1.81 16 13 N -0.91 -47.75 11.29 21.45 0.24 -47.51 16 14 Si 0.98 40.52 29.54 68.60 2.03 42.55 16 15 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 16 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 18 C -0.03 -1.19 6.17 71.98 0.44 -0.74 16 19 Cl -0.22 -9.36 25.60 -2.72 -0.07 -9.43 16 20 C -0.10 -3.57 5.89 -19.78 -0.12 -3.69 16 21 C -0.10 -2.86 9.79 71.24 0.70 -2.16 16 22 C -0.12 -3.83 9.64 22.36 0.22 -3.61 16 23 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 24 H 0.05 1.04 7.66 -2.39 -0.02 1.02 16 25 H 0.12 1.61 8.14 -2.38 -0.02 1.60 16 26 H 0.14 4.06 6.29 -2.91 -0.02 4.04 16 27 H 0.12 5.25 5.10 -2.91 -0.01 5.23 16 28 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 29 H 0.12 5.81 5.95 -2.39 -0.01 5.80 16 30 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 33 H 0.06 1.86 7.52 -2.39 -0.02 1.85 16 34 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -57.53 295.66 5.25 -52.28 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 1.11 Total: 19.01 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 3.74 Total: -30.74 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.24 Total: -47.51 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -1.80 Total: -26.15 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 17 Polarization: -9.36 SS G_CDS: -0.07 Total: -9.43 kcal Total: -57.53 5.25 -52.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227131302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.006 kcal (2) G-P(sol) polarization free energy of solvation -57.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds