Wall clock time and date at job start Mon Mar 30 2020 01:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35994 * 116.99978 * 2 1 4 4 C 1.38561 * 120.07166 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.00035 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14282 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.14864 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00209 * 180.02562 * 7 6 5 9 9 C 1.38565 * 120.00029 * 0.02562 * 7 6 5 10 10 O 1.35992 * 120.07388 * 180.02562 * 9 7 6 11 11 C 1.42902 * 117.00010 * 107.12202 * 10 9 7 12 12 H 1.09001 * 109.46908 * 36.74924 * 11 10 9 13 13 C 1.50696 * 109.47405 * 156.74928 * 11 10 9 14 14 H 1.08011 * 119.99738 * 0.02562 * 13 11 10 15 15 C 1.37867 * 120.00363 * 179.97438 * 13 11 10 16 16 N 1.31520 * 120.00030 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00418 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47036 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46932 * 120.00261 * 17 15 13 20 20 H 1.48504 * 109.47384 * 240.00328 * 17 15 13 21 21 C 1.52996 * 109.46909 * 276.75119 * 11 10 9 22 22 Cl 1.80309 * 109.47352 * 67.37452 * 21 11 10 23 23 H 1.08993 * 109.46798 * 299.99512 * 1 2 3 24 24 H 1.08999 * 109.46920 * 59.99999 * 1 2 3 25 25 H 1.09001 * 109.46842 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00315 * 0.25062 * 4 3 2 27 27 H 1.07993 * 119.92811 * 180.02562 * 5 4 3 28 28 H 1.08000 * 119.92428 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47101 * 83.74604 * 8 7 6 30 30 H 1.08996 * 109.47121 * 203.74998 * 8 7 6 31 31 H 1.09007 * 109.46729 * 323.75176 * 8 7 6 32 32 H 0.96991 * 120.00273 * 179.97438 * 16 15 13 33 33 H 1.09002 * 109.47478 * 187.37468 * 21 11 10 34 34 H 1.09009 * 109.47431 * 307.37701 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3747 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3029 3.6798 0.0016 7 6 4.0603 2.5233 0.0021 8 6 5.5649 2.6079 0.0033 9 6 3.4360 1.2863 0.0016 10 8 4.1796 0.1477 0.0027 11 6 4.2190 -0.6003 1.2197 12 1 3.2435 -0.5576 1.7041 13 6 4.5670 -2.0349 0.9166 14 1 4.7411 -2.3444 -0.1034 15 6 4.6642 -2.9520 1.9414 16 7 4.4527 -2.5750 3.1835 17 14 5.0949 -4.7304 1.5657 18 1 5.2820 -4.8957 0.1018 19 1 6.3510 -5.0947 2.2692 20 1 3.9946 -5.6144 2.0275 21 6 5.2771 -0.0045 2.1503 22 17 4.7517 1.6350 2.6862 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2146 2.3196 0.0050 27 1 1.3342 4.5114 0.0019 28 1 3.7908 4.6434 0.0024 29 1 5.9206 2.7401 1.0251 30 1 5.9808 1.6892 -0.4103 31 1 5.8816 3.4559 -0.6041 32 1 4.5207 -3.2202 3.9045 33 1 5.4001 -0.6491 3.0207 34 1 6.2258 0.0737 1.6191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227164421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:02 Heat of formation + Delta-G solvation = -65.574881 kcal Electronic energy + Delta-G solvation = -19375.162977 eV Core-core repulsion = 16299.628592 eV Total energy + Delta-G solvation = -3075.534385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.91645 -37.56402 -36.49892 -34.70704 -33.30426 -31.71125 -29.81879 -28.54633 -27.07498 -25.89912 -25.19726 -22.28123 -20.83487 -20.56281 -17.40711 -16.77179 -16.48078 -16.00443 -15.29865 -14.94397 -14.27865 -14.06408 -13.78063 -13.37095 -13.27650 -12.80887 -12.32455 -12.19779 -11.86057 -11.73670 -11.45398 -11.32280 -11.18998 -11.07329 -10.88912 -10.59793 -10.48524 -10.34474 -9.93541 -9.25249 -9.17207 -8.85141 -8.50522 -7.88755 -7.37120 -6.29210 -4.34811 1.77707 1.91699 3.18469 3.27178 3.33328 3.51883 3.76795 4.05401 4.27041 4.92699 5.06974 5.20263 5.30245 5.40225 5.46692 5.66834 5.75935 5.78894 5.86177 6.13618 6.19267 6.28289 6.35250 6.47073 6.61794 6.79088 6.82708 6.95655 7.03297 7.24640 7.39370 7.66838 7.85722 7.97104 8.58376 8.90646 9.32106 10.77969 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.007920 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.684399 B = 3534.368068 C = 4297.778514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.295 6.295 3 C 0.097 3.903 4 C -0.210 4.210 5 C -0.103 4.103 6 C -0.150 4.150 7 C -0.051 4.051 8 C -0.117 4.117 9 C 0.099 3.901 10 O -0.327 6.327 11 C 0.225 3.775 12 H 0.040 0.960 13 C -0.507 4.507 14 H 0.074 0.926 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.912 3.088 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.039 4.039 22 Cl -0.242 7.242 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.268 0.732 33 H 0.129 0.871 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 8.527 -3.881 10.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.207 6.207 3 C 0.051 3.949 4 C -0.229 4.229 5 C -0.121 4.121 6 C -0.169 4.169 7 C -0.051 4.051 8 C -0.173 4.173 9 C 0.054 3.946 10 O -0.244 6.244 11 C 0.171 3.829 12 H 0.057 0.943 13 C -0.545 4.545 14 H 0.093 0.907 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.739 3.261 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.101 4.101 22 Cl -0.216 7.216 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.114 0.886 26 H 0.139 0.861 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.666 8.269 -3.794 9.809 hybrid contribution -0.306 -0.615 0.259 0.734 sum -3.972 7.654 -3.535 9.320 Atomic orbital electron populations 1.22979 0.79780 1.03502 1.00407 1.86324 1.20050 1.25985 1.88379 1.19581 0.92243 0.84704 0.98359 1.20982 0.99330 0.92213 1.10337 1.20683 0.94460 0.96420 1.00533 1.20673 0.93480 0.97237 1.05480 1.19744 0.96571 0.91066 0.97762 1.20926 0.90992 1.02292 1.03098 1.17976 0.86256 0.87844 1.02574 1.86045 1.67650 1.33065 1.37633 1.20273 0.94683 0.88917 0.79040 0.94274 1.21023 1.48168 0.90515 0.94818 0.90749 1.24962 0.94703 0.99790 0.94713 1.69834 1.48691 1.35293 0.99129 0.86192 0.78056 0.83003 0.78820 1.19340 1.20699 1.20677 1.25879 1.00602 0.79950 1.03716 1.98622 1.92946 1.37369 1.92668 0.93237 0.93366 0.88579 0.86088 0.86592 0.86462 0.89965 0.90835 0.92667 0.92183 0.85269 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.29 -6.10 9.55 -34.22 -0.33 -6.43 16 3 C 0.10 1.97 6.42 -39.12 -0.25 1.72 16 4 C -0.21 -3.50 9.04 -39.46 -0.36 -3.86 16 5 C -0.10 -1.57 10.04 -39.57 -0.40 -1.97 16 6 C -0.15 -2.42 9.72 -39.58 -0.38 -2.80 16 7 C -0.05 -0.95 4.26 -104.50 -0.45 -1.39 16 8 C -0.12 -1.97 9.16 36.01 0.33 -1.64 16 9 C 0.10 2.13 4.65 -39.12 -0.18 1.95 16 10 O -0.33 -7.98 8.48 -34.22 -0.29 -8.27 16 11 C 0.23 5.78 2.19 -27.89 -0.06 5.72 16 12 H 0.04 1.12 7.23 -51.93 -0.38 0.74 16 13 C -0.51 -13.80 8.89 -34.45 -0.31 -14.11 16 14 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 15 C 0.06 1.60 5.28 -17.82 -0.09 1.50 16 16 N -0.89 -24.14 11.29 55.43 0.63 -23.52 16 17 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.04 -0.92 6.16 37.16 0.23 -0.69 16 22 Cl -0.24 -5.11 23.10 -51.86 -1.20 -6.30 16 23 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 24 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 25 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.12 1.68 6.30 -52.48 -0.33 1.35 16 27 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.08 1.41 5.91 -51.93 -0.31 1.10 16 30 H 0.07 1.34 7.34 -51.93 -0.38 0.96 16 31 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 33 H 0.13 3.30 5.91 -51.93 -0.31 2.99 16 34 H 0.07 1.61 8.14 -51.92 -0.42 1.19 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -28.95 293.56 -6.87 -35.82 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.15 Total: 2.88 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -0.93 Total: -14.16 kcal Atomic # 7 Polarization: -24.14 SS G_CDS: 0.63 Total: -23.52 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.62 Total: -14.70 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -5.11 SS G_CDS: -1.20 Total: -6.30 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.95 -6.87 -35.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227164421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.755 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds