Wall clock time and date at job start Mon Mar 30 2020 01:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35994 * 116.99978 * 2 1 4 4 C 1.38561 * 120.07166 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.00035 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14282 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.14864 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00209 * 180.02562 * 7 6 5 9 9 C 1.38565 * 120.00029 * 0.02562 * 7 6 5 10 10 O 1.35992 * 120.07388 * 180.02562 * 9 7 6 11 11 C 1.42902 * 117.00010 * 107.12202 * 10 9 7 12 12 H 1.09001 * 109.46908 * 36.74924 * 11 10 9 13 13 C 1.50696 * 109.47405 * 156.74928 * 11 10 9 14 14 H 1.08011 * 119.99738 * 0.02562 * 13 11 10 15 15 C 1.37867 * 120.00363 * 179.97438 * 13 11 10 16 16 N 1.31520 * 120.00030 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00418 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47036 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46932 * 120.00261 * 17 15 13 20 20 H 1.48504 * 109.47384 * 240.00328 * 17 15 13 21 21 C 1.52996 * 109.46909 * 276.75119 * 11 10 9 22 22 Cl 1.80309 * 109.47352 * 67.37452 * 21 11 10 23 23 H 1.08993 * 109.46798 * 299.99512 * 1 2 3 24 24 H 1.08999 * 109.46920 * 59.99999 * 1 2 3 25 25 H 1.09001 * 109.46842 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00315 * 0.25062 * 4 3 2 27 27 H 1.07993 * 119.92811 * 180.02562 * 5 4 3 28 28 H 1.08000 * 119.92428 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47101 * 83.74604 * 8 7 6 30 30 H 1.08996 * 109.47121 * 203.74998 * 8 7 6 31 31 H 1.09007 * 109.46729 * 323.75176 * 8 7 6 32 32 H 0.96991 * 120.00273 * 179.97438 * 16 15 13 33 33 H 1.09002 * 109.47478 * 187.37468 * 21 11 10 34 34 H 1.09009 * 109.47431 * 307.37701 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3747 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3029 3.6798 0.0016 7 6 4.0603 2.5233 0.0021 8 6 5.5649 2.6079 0.0033 9 6 3.4360 1.2863 0.0016 10 8 4.1796 0.1477 0.0027 11 6 4.2190 -0.6003 1.2197 12 1 3.2435 -0.5576 1.7041 13 6 4.5670 -2.0349 0.9166 14 1 4.7411 -2.3444 -0.1034 15 6 4.6642 -2.9520 1.9414 16 7 4.4527 -2.5750 3.1835 17 14 5.0949 -4.7304 1.5657 18 1 5.2820 -4.8957 0.1018 19 1 6.3510 -5.0947 2.2692 20 1 3.9946 -5.6144 2.0275 21 6 5.2771 -0.0045 2.1503 22 17 4.7517 1.6350 2.6862 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2146 2.3196 0.0050 27 1 1.3342 4.5114 0.0019 28 1 3.7908 4.6434 0.0024 29 1 5.9206 2.7401 1.0251 30 1 5.9808 1.6892 -0.4103 31 1 5.8816 3.4559 -0.6041 32 1 4.5207 -3.2202 3.9045 33 1 5.4001 -0.6491 3.0207 34 1 6.2258 0.0737 1.6191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227164421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:01 Heat of formation + Delta-G solvation = -81.691817 kcal Electronic energy + Delta-G solvation = -19375.861859 eV Core-core repulsion = 16299.628592 eV Total energy + Delta-G solvation = -3076.233268 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34738 -39.11788 -38.00268 -36.49591 -35.26783 -33.07840 -31.54105 -30.12009 -28.32163 -27.23832 -27.21206 -23.89116 -22.38165 -22.05143 -18.93420 -18.69874 -18.03868 -17.42880 -16.95126 -16.50009 -15.83120 -15.50174 -15.37035 -14.91602 -14.66240 -14.41606 -13.96352 -13.86635 -13.63449 -13.06684 -12.93465 -12.90113 -12.76837 -12.60938 -12.54621 -12.20813 -11.97699 -11.80297 -11.65294 -11.12839 -10.98738 -10.64844 -10.42778 -9.25737 -8.84740 -8.31484 -6.46269 0.40694 0.55788 1.38829 1.41658 1.55401 1.65857 2.32459 2.49365 2.71401 3.00568 3.40033 3.97190 4.07134 4.25735 4.37153 4.38037 4.45555 4.47343 4.49403 4.59675 4.68389 4.78008 4.91937 4.93564 5.05037 5.30217 5.35754 5.47774 5.54548 5.59100 5.69749 5.95708 5.96596 6.44824 6.62342 7.06864 7.29226 8.75261 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.007920 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.684399 B = 3534.368068 C = 4297.778514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.338 6.338 3 C 0.074 3.926 4 C -0.210 4.210 5 C -0.089 4.089 6 C -0.151 4.151 7 C -0.060 4.060 8 C -0.113 4.113 9 C 0.048 3.952 10 O -0.344 6.344 11 C 0.238 3.762 12 H 0.001 0.999 13 C -0.537 4.537 14 H 0.060 0.940 15 C 0.023 3.977 16 N -0.913 5.913 17 Si 0.976 3.024 18 H -0.269 1.269 19 H -0.269 1.269 20 H -0.275 1.275 21 C -0.028 4.028 22 Cl -0.218 7.218 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.150 0.850 27 H 0.160 0.840 28 H 0.151 0.849 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.273 0.727 33 H 0.109 0.891 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 10.209 -4.117 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.252 6.252 3 C 0.028 3.972 4 C -0.229 4.229 5 C -0.107 4.107 6 C -0.169 4.169 7 C -0.060 4.060 8 C -0.170 4.170 9 C 0.004 3.996 10 O -0.262 6.262 11 C 0.183 3.817 12 H 0.019 0.981 13 C -0.574 4.574 14 H 0.078 0.922 15 C -0.177 4.177 16 N -0.551 5.551 17 Si 0.800 3.200 18 H -0.194 1.194 19 H -0.194 1.194 20 H -0.200 1.200 21 C -0.091 4.091 22 Cl -0.192 7.192 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.123 0.877 26 H 0.167 0.833 27 H 0.178 0.822 28 H 0.169 0.831 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.367 9.975 -4.030 11.611 hybrid contribution -0.208 -0.979 0.318 1.050 sum -4.575 8.996 -3.712 10.754 Atomic orbital electron populations 1.23265 0.77192 1.04818 1.02073 1.86253 1.23014 1.27181 1.88721 1.19884 0.92315 0.85728 0.99231 1.21355 1.00706 0.91527 1.09269 1.21232 0.94566 0.97382 0.97530 1.21104 0.94050 0.97586 1.04154 1.20017 0.97468 0.90960 0.97576 1.20902 0.90256 1.02551 1.03257 1.18456 0.87152 0.87738 1.06280 1.85999 1.68627 1.34592 1.36964 1.19866 0.92951 0.88978 0.79885 0.98135 1.21222 1.49515 0.92215 0.94482 0.92223 1.25732 0.94044 1.03613 0.94361 1.69928 1.48651 1.36669 0.99814 0.85228 0.78250 0.77964 0.78575 1.19383 1.19420 1.20032 1.25451 1.00207 0.80983 1.02446 1.98608 1.92860 1.35266 1.92419 0.92100 0.90920 0.87669 0.83265 0.82249 0.83092 0.90376 0.93066 0.89382 0.91753 0.87255 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 16 2 O -0.34 -14.40 9.55 -79.61 -0.76 -15.16 16 3 C 0.07 3.01 6.42 22.57 0.14 3.16 16 4 C -0.21 -6.51 9.04 22.35 0.20 -6.31 16 5 C -0.09 -2.37 10.04 22.27 0.22 -2.15 16 6 C -0.15 -4.36 9.72 22.27 0.22 -4.14 16 7 C -0.06 -2.16 4.26 -19.79 -0.08 -2.25 16 8 C -0.11 -3.74 9.16 71.24 0.65 -3.09 16 9 C 0.05 2.12 4.65 22.57 0.11 2.22 16 10 O -0.34 -17.63 8.48 -79.59 -0.68 -18.31 16 11 C 0.24 12.82 2.19 29.85 0.07 12.88 16 12 H 0.00 0.06 7.23 -2.39 -0.02 0.04 16 13 C -0.54 -30.52 8.89 25.60 0.23 -30.29 16 14 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 15 C 0.02 1.22 5.28 84.65 0.45 1.67 16 16 N -0.91 -50.55 11.29 21.44 0.24 -50.31 16 17 Si 0.98 42.72 29.54 68.60 2.03 44.75 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 C -0.03 -1.36 6.16 71.98 0.44 -0.92 16 22 Cl -0.22 -9.21 23.10 -2.72 -0.06 -9.28 16 23 H 0.06 1.56 7.66 -2.39 -0.02 1.54 16 24 H 0.07 1.67 7.67 -2.39 -0.02 1.66 16 25 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.15 3.64 6.30 -2.91 -0.02 3.63 16 27 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 28 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.08 2.61 5.91 -2.39 -0.01 2.59 16 30 H 0.05 1.90 7.34 -2.39 -0.02 1.88 16 31 H 0.09 2.25 8.13 -2.38 -0.02 2.23 16 32 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.11 5.78 5.91 -2.39 -0.01 5.77 16 34 H 0.08 3.57 8.14 -2.38 -0.02 3.55 16 Total: -1.00 -65.44 293.56 5.63 -59.81 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.10 Total: 15.99 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 3.76 Total: -27.50 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.24 Total: -50.31 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.44 Total: -33.47 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 17 Polarization: -9.21 SS G_CDS: -0.06 Total: -9.28 kcal Total: -65.44 5.63 -59.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227164421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.879 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds