Wall clock time and date at job start Mon Mar 30 2020 01:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99636 * 2 1 4 4 C 1.38793 * 120.03040 * 359.73457 * 3 2 1 5 5 C 1.38149 * 120.05544 * 179.73758 * 4 3 2 6 6 C 1.38194 * 120.10789 * 0.50748 * 5 4 3 7 7 C 1.50710 * 119.97481 * 179.74443 * 6 5 4 8 8 C 1.38746 * 120.05620 * 359.76512 * 6 5 4 9 9 O 1.35904 * 120.03033 * 179.97438 * 8 6 5 10 10 C 1.42899 * 117.00057 * 176.72161 * 9 8 6 11 11 H 1.09000 * 109.46745 * 26.88705 * 10 9 8 12 12 C 1.50704 * 109.46791 * 146.88197 * 10 9 8 13 13 H 1.07995 * 120.00099 * 0.02562 * 12 10 9 14 14 C 1.37881 * 119.99670 * 180.02562 * 12 10 9 15 15 N 1.31512 * 120.00254 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99674 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47608 * 59.99891 * 16 14 12 18 18 H 1.48503 * 109.47197 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47323 * 299.99607 * 16 14 12 20 20 C 1.52998 * 109.47498 * 266.88186 * 10 9 8 21 21 Cl 1.80301 * 109.46911 * 64.99819 * 20 10 9 22 22 C 1.38613 * 120.02284 * 179.97438 * 3 2 1 23 23 H 1.09005 * 109.47623 * 59.99784 * 1 2 3 24 24 H 1.09004 * 109.47009 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47546 * 299.99523 * 1 2 3 26 26 H 1.08003 * 119.96932 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.94578 * 180.24724 * 5 4 3 28 28 H 1.09002 * 109.46715 * 270.02601 * 7 6 5 29 29 H 1.09007 * 109.46322 * 30.01967 * 7 6 5 30 30 H 1.08992 * 109.46939 * 150.02224 * 7 6 5 31 31 H 0.96994 * 120.00334 * 180.02562 * 15 14 12 32 32 H 1.08990 * 109.47286 * 185.00092 * 20 10 9 33 33 H 1.09000 * 109.46662 * 305.00556 * 20 10 9 34 34 H 1.07994 * 120.05670 * 0.03265 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3753 -0.0056 5 6 1.9171 3.6065 -0.0001 6 6 3.2969 3.6822 0.0003 7 6 3.9773 5.0269 0.0005 8 6 4.0565 2.5211 0.0002 9 8 5.4135 2.5961 0.0001 10 6 6.1314 1.3627 0.0728 11 1 5.5229 0.5627 -0.3489 12 6 7.4151 1.4820 -0.7077 13 1 7.6585 2.4073 -1.2086 14 6 8.2788 0.4098 -0.7821 15 7 7.9822 -0.7171 -0.1724 16 14 9.8703 0.5579 -1.7488 17 1 10.6995 1.6472 -1.1736 18 1 10.6164 -0.7239 -1.6735 19 1 9.5606 0.8682 -3.1676 20 6 6.4511 1.0439 1.5347 21 17 4.9165 0.7565 2.4365 22 6 3.4301 1.2841 0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.2120 2.3187 -0.0103 27 1 1.3275 4.5114 -0.0004 28 1 4.1412 5.3512 -1.0272 29 1 3.3471 5.7528 0.5145 30 1 4.9354 4.9493 0.5143 31 1 8.5899 -1.4712 -0.2245 32 1 7.0742 0.1511 1.5840 33 1 6.9833 1.8837 1.9816 34 1 4.0196 0.3792 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228725790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:05 Heat of formation + Delta-G solvation = -68.475764 kcal Electronic energy + Delta-G solvation = -18853.491467 eV Core-core repulsion = 15777.831290 eV Total energy + Delta-G solvation = -3075.660177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94782 -38.40194 -36.28943 -34.74092 -33.39060 -31.64373 -29.99811 -29.05027 -27.31030 -25.45995 -25.29697 -22.91918 -20.80401 -20.41151 -18.13874 -16.90903 -15.92780 -15.75917 -15.46547 -14.93038 -14.70769 -14.41084 -13.91801 -13.44895 -13.14760 -12.89711 -12.61883 -12.12370 -11.99195 -11.92178 -11.71931 -11.43503 -11.20338 -11.04660 -10.97269 -10.71322 -10.60529 -10.28496 -10.16342 -9.62252 -9.36877 -9.14938 -8.64753 -7.74940 -7.26838 -6.41256 -4.49103 1.90890 2.02579 3.15851 3.21572 3.23939 3.45060 3.58786 4.05930 4.28444 4.45503 4.94981 5.11912 5.27446 5.30712 5.41737 5.55550 5.57737 5.75625 5.98396 6.11043 6.14731 6.17802 6.31431 6.31827 6.43404 6.73606 6.75787 6.88583 7.06462 7.15619 7.27360 7.55391 7.77434 7.81485 8.34841 8.68900 9.18406 10.65872 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.006366 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.434690 B = 4397.059149 C = 4788.520205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.152 3.848 4 C -0.259 4.259 5 C -0.054 4.054 6 C -0.169 4.169 7 C -0.093 4.093 8 C 0.194 3.806 9 O -0.303 6.303 10 C 0.203 3.797 11 H 0.053 0.947 12 C -0.522 4.522 13 H 0.076 0.924 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.916 3.084 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.036 4.036 21 Cl -0.238 7.238 22 C -0.222 4.222 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.273 0.727 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 4.249 0.990 11.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.231 6.231 3 C 0.107 3.893 4 C -0.278 4.278 5 C -0.073 4.073 6 C -0.170 4.170 7 C -0.150 4.150 8 C 0.146 3.854 9 O -0.215 6.215 10 C 0.148 3.852 11 H 0.071 0.929 12 C -0.560 4.560 13 H 0.094 0.906 14 C -0.139 4.139 15 N -0.525 5.525 16 Si 0.743 3.257 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.099 4.099 21 Cl -0.212 7.212 22 C -0.241 4.241 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.151 0.849 33 H 0.092 0.908 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.987 4.000 1.085 10.813 hybrid contribution 0.424 -0.250 -0.292 0.572 sum -9.564 3.751 0.793 10.303 Atomic orbital electron populations 1.22952 0.79292 1.03227 1.00962 1.86084 1.20608 1.27513 1.88850 1.18656 0.91647 0.83648 0.95308 1.20873 0.99108 0.92357 1.15465 1.20420 0.92885 0.96595 0.97368 1.19100 0.92727 0.94010 1.11186 1.20451 1.00438 0.92587 1.01516 1.18584 0.84311 0.91903 0.90630 1.86144 1.13147 1.36508 1.85737 1.20568 0.92048 0.81358 0.91200 0.92918 1.20972 1.02879 1.00301 1.31818 0.90590 1.24979 0.98960 0.94532 0.95469 1.69792 1.37603 1.02928 1.42210 0.86234 0.81557 0.77612 0.80309 1.19746 1.20872 1.19729 1.25728 0.84916 1.05606 0.93615 1.98651 1.44675 1.97513 1.80390 1.20657 0.92159 0.99008 1.12248 0.93018 0.88808 0.93042 0.86387 0.86167 0.92242 0.92771 0.91250 0.91745 0.84923 0.90787 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.52 10.49 -19.42 -0.20 -5.73 16 3 C 0.15 2.85 6.68 -39.24 -0.26 2.58 16 4 C -0.26 -4.16 9.04 -39.41 -0.36 -4.52 16 5 C -0.05 -0.86 9.69 -39.63 -0.38 -1.25 16 6 C -0.17 -3.08 5.89 -104.45 -0.62 -3.70 16 7 C -0.09 -1.46 9.79 36.01 0.35 -1.11 16 8 C 0.19 4.10 5.94 -39.24 -0.23 3.87 16 9 O -0.30 -7.05 8.77 -19.44 -0.17 -7.22 16 10 C 0.20 5.00 2.19 -27.88 -0.06 4.94 16 11 H 0.05 1.39 5.39 -51.93 -0.28 1.11 16 12 C -0.52 -13.64 8.89 -34.44 -0.31 -13.95 16 13 H 0.08 1.98 7.81 -52.49 -0.41 1.57 16 14 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 15 N -0.89 -23.33 11.30 55.43 0.63 -22.70 16 16 Si 0.92 19.97 29.54 -169.99 -5.02 14.95 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.04 -0.84 6.17 37.16 0.23 -0.61 16 21 Cl -0.24 -5.12 25.61 -51.86 -1.33 -6.45 16 22 C -0.22 -4.68 6.98 -39.29 -0.27 -4.96 16 23 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 26 H 0.12 1.53 6.29 -52.48 -0.33 1.20 16 27 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.07 1.17 7.53 -51.93 -0.39 0.78 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.13 3.29 5.95 -51.93 -0.31 2.98 16 33 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.15 3.35 5.10 -52.49 -0.27 3.08 16 LS Contribution 295.67 15.07 4.46 4.46 Total: -1.00 -27.46 295.67 -6.68 -34.14 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.03 Total: 4.34 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.01 Total: -15.79 kcal Atomic # 7 Polarization: -23.33 SS G_CDS: 0.63 Total: -22.70 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.37 Total: -12.94 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 17 Polarization: -5.12 SS G_CDS: -1.33 Total: -6.45 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.46 -6.68 -34.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228725790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.332 kcal (2) G-P(sol) polarization free energy of solvation -27.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds