Wall clock time and date at job start Mon Mar 30 2020 01:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99636 * 2 1 4 4 C 1.38793 * 120.03040 * 359.73457 * 3 2 1 5 5 C 1.38149 * 120.05544 * 179.73758 * 4 3 2 6 6 C 1.38194 * 120.10789 * 0.50748 * 5 4 3 7 7 C 1.50710 * 119.97481 * 179.74443 * 6 5 4 8 8 C 1.38746 * 120.05620 * 359.76512 * 6 5 4 9 9 O 1.35904 * 120.03033 * 179.97438 * 8 6 5 10 10 C 1.42899 * 117.00057 * 176.72161 * 9 8 6 11 11 H 1.09000 * 109.46745 * 26.88705 * 10 9 8 12 12 C 1.50704 * 109.46791 * 146.88197 * 10 9 8 13 13 H 1.07995 * 120.00099 * 0.02562 * 12 10 9 14 14 C 1.37881 * 119.99670 * 180.02562 * 12 10 9 15 15 N 1.31512 * 120.00254 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99674 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47608 * 59.99891 * 16 14 12 18 18 H 1.48503 * 109.47197 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47323 * 299.99607 * 16 14 12 20 20 C 1.52998 * 109.47498 * 266.88186 * 10 9 8 21 21 Cl 1.80301 * 109.46911 * 64.99819 * 20 10 9 22 22 C 1.38613 * 120.02284 * 179.97438 * 3 2 1 23 23 H 1.09005 * 109.47623 * 59.99784 * 1 2 3 24 24 H 1.09004 * 109.47009 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47546 * 299.99523 * 1 2 3 26 26 H 1.08003 * 119.96932 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.94578 * 180.24724 * 5 4 3 28 28 H 1.09002 * 109.46715 * 270.02601 * 7 6 5 29 29 H 1.09007 * 109.46322 * 30.01967 * 7 6 5 30 30 H 1.08992 * 109.46939 * 150.02224 * 7 6 5 31 31 H 0.96994 * 120.00334 * 180.02562 * 15 14 12 32 32 H 1.08990 * 109.47286 * 185.00092 * 20 10 9 33 33 H 1.09000 * 109.46662 * 305.00556 * 20 10 9 34 34 H 1.07994 * 120.05670 * 0.03265 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3753 -0.0056 5 6 1.9171 3.6065 -0.0001 6 6 3.2969 3.6822 0.0003 7 6 3.9773 5.0269 0.0005 8 6 4.0565 2.5211 0.0002 9 8 5.4135 2.5961 0.0001 10 6 6.1314 1.3627 0.0728 11 1 5.5229 0.5627 -0.3489 12 6 7.4151 1.4820 -0.7077 13 1 7.6585 2.4073 -1.2086 14 6 8.2788 0.4098 -0.7821 15 7 7.9822 -0.7171 -0.1724 16 14 9.8703 0.5579 -1.7488 17 1 10.6995 1.6472 -1.1736 18 1 10.6164 -0.7239 -1.6735 19 1 9.5606 0.8682 -3.1676 20 6 6.4511 1.0439 1.5347 21 17 4.9165 0.7565 2.4365 22 6 3.4301 1.2841 0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.2120 2.3187 -0.0103 27 1 1.3275 4.5114 -0.0004 28 1 4.1412 5.3512 -1.0272 29 1 3.3471 5.7528 0.5145 30 1 4.9354 4.9493 0.5143 31 1 8.5899 -1.4712 -0.2245 32 1 7.0742 0.1511 1.5840 33 1 6.9833 1.8837 1.9816 34 1 4.0196 0.3792 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228725790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:04 Heat of formation + Delta-G solvation = -83.636970 kcal Electronic energy + Delta-G solvation = -18854.148906 eV Core-core repulsion = 15777.831290 eV Total energy + Delta-G solvation = -3076.317616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37587 -39.87086 -37.76839 -36.52493 -35.30498 -32.99496 -31.63965 -30.65597 -28.42834 -27.28329 -26.68267 -24.54881 -22.19581 -22.05979 -19.58502 -18.74769 -17.58837 -17.17542 -16.67087 -16.52245 -16.27799 -16.01580 -15.44250 -14.91921 -14.62632 -14.34521 -14.21493 -13.79875 -13.45495 -13.26812 -13.02424 -13.01270 -12.77065 -12.64951 -12.52809 -12.34313 -12.07038 -11.80872 -11.59786 -11.41051 -11.16246 -10.93673 -10.57152 -9.22672 -8.71151 -8.37086 -6.53699 0.52044 0.60905 1.40789 1.43106 1.52940 1.60963 2.26263 2.41969 2.75257 2.88594 2.98244 3.93777 4.12857 4.20014 4.29907 4.33533 4.40436 4.42865 4.51607 4.67416 4.69223 4.73157 4.86830 4.94866 4.98578 5.17759 5.24200 5.40856 5.51535 5.53534 5.71257 5.81568 5.89560 6.45409 6.55851 6.83479 7.18944 8.69562 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.006366 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.434690 B = 4397.059149 C = 4788.520205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.143 3.857 4 C -0.246 4.246 5 C -0.044 4.044 6 C -0.180 4.180 7 C -0.090 4.090 8 C 0.159 3.841 9 O -0.317 6.317 10 C 0.211 3.789 11 H 0.026 0.974 12 C -0.548 4.548 13 H 0.069 0.931 14 C 0.025 3.975 15 N -0.911 5.911 16 Si 0.980 3.020 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.270 1.270 20 C -0.026 4.026 21 Cl -0.222 7.222 22 C -0.246 4.246 23 H 0.069 0.931 24 H 0.115 0.885 25 H 0.066 0.934 26 H 0.157 0.843 27 H 0.166 0.834 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.276 0.724 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 5.655 0.815 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C 0.098 3.902 4 C -0.265 4.265 5 C -0.062 4.062 6 C -0.180 4.180 7 C -0.147 4.147 8 C 0.113 3.887 9 O -0.231 6.231 10 C 0.155 3.845 11 H 0.044 0.956 12 C -0.586 4.586 13 H 0.087 0.913 14 C -0.176 4.176 15 N -0.548 5.548 16 Si 0.803 3.197 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.195 1.195 20 C -0.089 4.089 21 Cl -0.196 7.196 22 C -0.265 4.265 23 H 0.087 0.913 24 H 0.133 0.867 25 H 0.085 0.915 26 H 0.175 0.825 27 H 0.183 0.817 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.095 0.905 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.849 5.407 0.918 13.057 hybrid contribution 0.767 -0.713 -0.219 1.070 sum -11.082 4.694 0.699 12.055 Atomic orbital electron populations 1.23342 0.76280 1.05350 1.02469 1.86052 1.23771 1.27346 1.88695 1.18789 0.91043 0.85185 0.95217 1.21316 1.00907 0.91277 1.12978 1.20941 0.92004 0.98281 0.94928 1.19540 0.93901 0.93913 1.10694 1.20477 0.99908 0.92134 1.02171 1.18963 0.83425 0.93268 0.93062 1.86076 1.14781 1.35392 1.86836 1.20259 0.91321 0.81398 0.91488 0.95630 1.21221 1.04011 1.00466 1.32853 0.91314 1.25776 1.01832 0.93951 0.96080 1.69896 1.38638 1.03452 1.42861 0.85266 0.77696 0.77950 0.78809 1.18917 1.20094 1.19526 1.25395 0.85330 1.04712 0.93414 1.98640 1.43666 1.97469 1.79859 1.20509 0.93528 0.97847 1.14658 0.91262 0.86681 0.91530 0.82516 0.81652 0.91523 0.89356 0.93377 0.91485 0.86622 0.90488 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.34 -11.75 10.49 -92.41 -0.97 -12.72 16 3 C 0.14 5.24 6.68 22.49 0.15 5.39 16 4 C -0.25 -7.09 9.04 22.38 0.20 -6.89 16 5 C -0.04 -1.23 9.69 22.24 0.22 -1.01 16 6 C -0.18 -6.28 5.89 -19.75 -0.12 -6.40 16 7 C -0.09 -2.67 9.79 71.24 0.70 -1.97 16 8 C 0.16 6.90 5.94 22.49 0.13 7.04 16 9 O -0.32 -15.45 8.77 -92.47 -0.81 -16.26 16 10 C 0.21 10.95 2.19 29.85 0.07 11.02 16 11 H 0.03 1.48 5.39 -2.39 -0.01 1.47 16 12 C -0.55 -29.81 8.89 25.60 0.23 -29.58 16 13 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 14 C 0.02 1.29 5.29 84.66 0.45 1.74 16 15 N -0.91 -49.31 11.30 21.45 0.24 -49.07 16 16 Si 0.98 41.32 29.54 68.60 2.03 43.35 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 18 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 C -0.03 -1.24 6.17 71.98 0.44 -0.80 16 21 Cl -0.22 -9.85 25.61 -2.72 -0.07 -9.92 16 22 C -0.25 -10.77 6.98 22.46 0.16 -10.61 16 23 H 0.07 1.19 7.65 -2.38 -0.02 1.17 16 24 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 25 H 0.07 1.18 7.67 -2.39 -0.02 1.16 16 26 H 0.16 3.25 6.29 -2.91 -0.02 3.23 16 27 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.09 1.96 8.09 -2.38 -0.02 1.95 16 30 H 0.05 1.61 7.53 -2.39 -0.02 1.59 16 31 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.12 6.01 5.95 -2.39 -0.01 6.00 16 33 H 0.08 3.60 8.14 -2.39 -0.02 3.59 16 34 H 0.11 5.55 5.10 -2.91 -0.01 5.53 16 Total: -1.00 -62.13 295.67 5.27 -56.86 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 1.11 Total: 18.31 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 3.74 Total: -30.54 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.24 Total: -49.07 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -1.78 Total: -28.98 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 17 Polarization: -9.85 SS G_CDS: -0.07 Total: -9.92 kcal Total: -62.13 5.27 -56.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228725790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.777 kcal (2) G-P(sol) polarization free energy of solvation -62.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds