Wall clock time and date at job start Mon Mar 30 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99742 * 2 1 4 4 C 1.50706 * 109.46737 * 179.97438 * 3 2 1 5 5 C 1.38167 * 120.02662 * 359.97438 * 4 3 2 6 6 C 1.38244 * 120.05288 * 179.97438 * 5 4 3 7 7 C 1.38295 * 120.11037 * 0.02888 * 6 5 4 8 8 C 1.38120 * 120.05605 * 359.97399 * 7 6 5 9 9 C 1.38711 * 120.02665 * 179.72087 * 4 3 2 10 10 O 1.35905 * 120.05474 * 0.02562 * 9 4 3 11 11 C 1.42893 * 116.99697 * 181.64493 * 10 9 4 12 12 H 1.08997 * 109.47594 * 22.41204 * 11 10 9 13 13 C 1.50701 * 109.47128 * 142.41092 * 11 10 9 14 14 H 1.08005 * 120.00356 * 25.65278 * 13 11 10 15 15 C 1.37877 * 120.00266 * 205.65573 * 13 11 10 16 16 N 1.31512 * 120.00464 * 185.08898 * 15 13 11 17 17 Si 1.86810 * 119.99758 * 5.08524 * 15 13 11 18 18 H 1.48500 * 109.46922 * 94.42188 * 17 15 13 19 19 H 1.48502 * 109.46938 * 214.42016 * 17 15 13 20 20 H 1.48493 * 109.46874 * 334.41950 * 17 15 13 21 21 C 1.52999 * 109.47079 * 262.40619 * 11 10 9 22 22 Cl 1.80301 * 109.47101 * 63.11812 * 21 11 10 23 23 H 1.08995 * 109.47329 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47334 * 299.99999 * 1 2 3 25 25 H 1.09006 * 109.47092 * 59.99974 * 1 2 3 26 26 H 1.08996 * 109.47388 * 299.99338 * 3 2 1 27 27 H 1.08993 * 109.47367 * 60.00263 * 3 2 1 28 28 H 1.07995 * 119.97334 * 359.97438 * 5 4 3 29 29 H 1.08001 * 119.94669 * 180.02562 * 6 5 4 30 30 H 1.08004 * 119.97001 * 179.97438 * 7 6 5 31 31 H 1.07998 * 120.02476 * 180.02562 * 8 7 6 32 32 H 0.97001 * 120.00357 * 179.97438 * 16 15 13 33 33 H 1.09007 * 109.47064 * 183.11332 * 21 11 10 34 34 H 1.08998 * 109.47441 * 303.11802 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1073 -0.0606 0.0016 6 6 5.4853 -0.1704 0.0017 7 6 6.2720 0.9670 0.0013 8 6 5.6822 2.2160 0.0004 9 6 4.2993 2.3289 -0.0051 10 8 3.7166 3.5566 -0.0108 11 6 4.5883 4.6881 -0.0530 12 1 5.5520 4.3893 -0.4652 13 6 3.9803 5.7584 -0.9225 14 1 2.9094 5.8018 -1.0563 15 6 4.7910 6.6823 -1.5472 16 7 4.2565 7.6752 -2.2238 17 14 6.6488 6.5235 -1.4323 18 1 7.1567 5.7857 -2.6167 19 1 7.2597 7.8765 -1.3925 20 1 7.0067 5.7823 -0.1964 21 6 4.7860 5.2328 1.3630 22 17 5.5970 3.9838 2.3795 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8464 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 3.4951 -0.9503 0.0024 29 1 5.9484 -1.1461 0.0021 30 1 7.3484 0.8786 0.0018 31 1 6.2970 3.1039 -0.0003 32 1 4.8269 8.3254 -2.6630 33 1 5.4060 6.1285 1.3245 34 1 3.8167 5.4801 1.7958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229252375.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:53 Heat of formation + Delta-G solvation = -69.362267 kcal Electronic energy + Delta-G solvation = -18771.609888 eV Core-core repulsion = 15695.911269 eV Total energy + Delta-G solvation = -3075.698618 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.74575 -37.74273 -36.75352 -35.15979 -33.31821 -31.73154 -30.49265 -29.21326 -26.96363 -25.35969 -25.11546 -22.80025 -21.10908 -20.24509 -17.93641 -16.92031 -16.25718 -15.83344 -15.69807 -15.10316 -14.68480 -14.29425 -14.24724 -13.87140 -13.30042 -13.08497 -12.86274 -12.70682 -12.36191 -12.02131 -11.67744 -11.48499 -11.40535 -11.11014 -10.81054 -10.74882 -10.48774 -10.10282 -9.85594 -9.66500 -9.60284 -9.35663 -8.91676 -8.30309 -7.43882 -6.48952 -4.55411 1.78254 1.98637 2.93800 3.05436 3.10079 3.14648 3.88319 4.03749 4.06896 4.23796 4.83855 5.16975 5.35681 5.39747 5.41961 5.48394 5.65689 5.67283 5.71023 5.78465 5.84475 5.86835 5.90666 6.10008 6.26125 6.44938 6.54907 6.77301 6.85921 6.96455 7.13898 7.29867 7.38424 7.88361 8.33418 8.64677 9.07544 10.61772 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.006906 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.746731 B = 4053.485407 C = 4587.659994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.118 3.882 4 C -0.138 4.138 5 C -0.065 4.065 6 C -0.177 4.177 7 C -0.084 4.084 8 C -0.200 4.200 9 C 0.161 3.839 10 O -0.300 6.300 11 C 0.177 3.823 12 H 0.051 0.949 13 C -0.526 4.526 14 H 0.091 0.909 15 C 0.086 3.914 16 N -0.871 5.871 17 Si 0.858 3.142 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.255 1.255 21 C -0.039 4.039 22 Cl -0.227 7.227 23 H 0.082 0.918 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.129 0.871 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.273 0.727 33 H 0.095 0.905 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 -10.992 4.843 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.042 3.958 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.196 4.196 7 C -0.102 4.102 8 C -0.219 4.219 9 C 0.114 3.886 10 O -0.212 6.212 11 C 0.122 3.878 12 H 0.069 0.931 13 C -0.563 4.563 14 H 0.109 0.891 15 C -0.120 4.120 16 N -0.506 5.506 17 Si 0.683 3.317 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.180 1.180 21 C -0.102 4.102 22 Cl -0.201 7.201 23 H 0.101 0.899 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.147 0.853 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.295 -10.976 4.799 11.983 hybrid contribution 1.086 0.472 0.056 1.185 sum 0.791 -10.504 4.855 11.598 Atomic orbital electron populations 1.22692 0.81244 1.02272 1.00138 1.87781 1.19415 1.28422 1.95560 1.20987 0.90002 0.83680 1.01139 1.18883 0.93701 0.91552 1.09710 1.20664 0.94238 0.96333 0.97052 1.20873 0.93738 0.97959 1.06986 1.20855 0.99240 0.92047 0.98045 1.21325 0.94000 0.98825 1.07703 1.18806 0.91079 0.85705 0.92996 1.86182 1.37248 1.11533 1.86279 1.20846 0.92043 0.83598 0.91344 0.93109 1.20725 0.96883 1.10302 1.28401 0.89134 1.24902 0.98784 0.94499 0.93832 1.69836 1.36233 1.12897 1.31624 0.87129 0.85617 0.78844 0.80153 1.19180 1.20099 1.17956 1.26012 0.99248 0.91976 0.92933 1.98673 1.83810 1.62585 1.75049 0.89940 0.94138 0.94025 0.91790 0.92129 0.85284 0.86734 0.86673 0.85118 0.91633 0.88666 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.39 -5.87 9.18 -35.23 -0.32 -6.19 16 3 C 0.12 1.95 5.80 36.01 0.21 2.16 16 4 C -0.14 -2.50 5.89 -104.47 -0.62 -3.12 16 5 C -0.06 -1.06 9.37 -39.61 -0.37 -1.43 16 6 C -0.18 -2.71 10.04 -39.56 -0.40 -3.10 16 7 C -0.08 -1.36 10.04 -39.60 -0.40 -1.76 16 8 C -0.20 -3.79 7.25 -39.44 -0.29 -4.08 16 9 C 0.16 3.23 6.05 -39.22 -0.24 3.00 16 10 O -0.30 -6.61 9.10 -19.44 -0.18 -6.79 16 11 C 0.18 4.00 1.69 -27.88 -0.05 3.95 16 12 H 0.05 1.16 2.90 -51.93 -0.15 1.01 16 13 C -0.53 -13.73 9.23 -34.44 -0.32 -14.05 16 14 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 15 C 0.09 2.26 5.47 -17.82 -0.10 2.16 16 16 N -0.87 -24.31 13.96 55.43 0.77 -23.54 16 17 Si 0.86 19.15 26.38 -169.99 -4.48 14.67 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 20 H -0.26 -5.35 5.98 56.52 0.34 -5.02 16 21 C -0.04 -0.78 5.96 37.16 0.22 -0.56 16 22 Cl -0.23 -4.26 25.88 -51.86 -1.34 -5.60 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.13 1.91 7.00 -52.49 -0.37 1.54 16 29 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.13 2.57 5.08 -52.49 -0.27 2.30 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 33 H 0.09 1.88 6.92 -51.92 -0.36 1.52 16 34 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 LS Contribution 295.75 15.07 4.46 4.46 Total: -1.00 -27.71 295.75 -6.47 -34.18 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.15 Total: 4.16 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.23 Total: -15.35 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.77 Total: -23.54 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.50 Total: -12.98 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.48 Total: 14.67 kcal Atomic # 17 Polarization: -4.26 SS G_CDS: -1.34 Total: -5.60 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.71 -6.47 -34.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229252375.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.179 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds