Wall clock time and date at job start Mon Mar 30 2020 02:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99742 * 2 1 4 4 C 1.50706 * 109.46737 * 179.97438 * 3 2 1 5 5 C 1.38167 * 120.02662 * 359.97438 * 4 3 2 6 6 C 1.38244 * 120.05288 * 179.97438 * 5 4 3 7 7 C 1.38295 * 120.11037 * 0.02888 * 6 5 4 8 8 C 1.38120 * 120.05605 * 359.97399 * 7 6 5 9 9 C 1.38711 * 120.02665 * 179.72087 * 4 3 2 10 10 O 1.35905 * 120.05474 * 0.02562 * 9 4 3 11 11 C 1.42893 * 116.99697 * 181.64493 * 10 9 4 12 12 H 1.08997 * 109.47594 * 22.41204 * 11 10 9 13 13 C 1.50701 * 109.47128 * 142.41092 * 11 10 9 14 14 H 1.08005 * 120.00356 * 25.65278 * 13 11 10 15 15 C 1.37877 * 120.00266 * 205.65573 * 13 11 10 16 16 N 1.31512 * 120.00464 * 185.08898 * 15 13 11 17 17 Si 1.86810 * 119.99758 * 5.08524 * 15 13 11 18 18 H 1.48500 * 109.46922 * 94.42188 * 17 15 13 19 19 H 1.48502 * 109.46938 * 214.42016 * 17 15 13 20 20 H 1.48493 * 109.46874 * 334.41950 * 17 15 13 21 21 C 1.52999 * 109.47079 * 262.40619 * 11 10 9 22 22 Cl 1.80301 * 109.47101 * 63.11812 * 21 11 10 23 23 H 1.08995 * 109.47329 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47334 * 299.99999 * 1 2 3 25 25 H 1.09006 * 109.47092 * 59.99974 * 1 2 3 26 26 H 1.08996 * 109.47388 * 299.99338 * 3 2 1 27 27 H 1.08993 * 109.47367 * 60.00263 * 3 2 1 28 28 H 1.07995 * 119.97334 * 359.97438 * 5 4 3 29 29 H 1.08001 * 119.94669 * 180.02562 * 6 5 4 30 30 H 1.08004 * 119.97001 * 179.97438 * 7 6 5 31 31 H 1.07998 * 120.02476 * 180.02562 * 8 7 6 32 32 H 0.97001 * 120.00357 * 179.97438 * 16 15 13 33 33 H 1.09007 * 109.47064 * 183.11332 * 21 11 10 34 34 H 1.08998 * 109.47441 * 303.11802 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1073 -0.0606 0.0016 6 6 5.4853 -0.1704 0.0017 7 6 6.2720 0.9670 0.0013 8 6 5.6822 2.2160 0.0004 9 6 4.2993 2.3289 -0.0051 10 8 3.7166 3.5566 -0.0108 11 6 4.5883 4.6881 -0.0530 12 1 5.5520 4.3893 -0.4652 13 6 3.9803 5.7584 -0.9225 14 1 2.9094 5.8018 -1.0563 15 6 4.7910 6.6823 -1.5472 16 7 4.2565 7.6752 -2.2238 17 14 6.6488 6.5235 -1.4323 18 1 7.1567 5.7857 -2.6167 19 1 7.2597 7.8765 -1.3925 20 1 7.0067 5.7823 -0.1964 21 6 4.7860 5.2328 1.3630 22 17 5.5970 3.9838 2.3795 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8464 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 3.4951 -0.9503 0.0024 29 1 5.9484 -1.1461 0.0021 30 1 7.3484 0.8786 0.0018 31 1 6.2970 3.1039 -0.0003 32 1 4.8269 8.3254 -2.6630 33 1 5.4060 6.1285 1.3245 34 1 3.8167 5.4801 1.7958 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229252375.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:52 Heat of formation + Delta-G solvation = -85.497768 kcal Electronic energy + Delta-G solvation = -18772.309576 eV Core-core repulsion = 15695.911269 eV Total energy + Delta-G solvation = -3076.398306 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.19458 -39.05160 -38.09296 -36.72817 -35.22939 -33.14668 -32.13015 -30.62130 -28.04771 -27.23910 -26.29819 -24.33735 -22.45500 -21.83351 -19.59926 -18.69624 -17.53178 -17.25487 -16.90508 -16.56769 -16.18816 -15.84000 -15.42110 -15.37511 -14.88264 -14.73774 -14.54880 -14.02129 -13.54483 -13.46671 -13.28156 -12.99992 -12.83666 -12.57784 -12.32702 -12.03297 -11.91910 -11.87302 -11.46961 -11.21928 -11.10031 -10.84380 -10.79248 -9.63105 -8.87368 -8.50631 -6.63362 0.45612 0.63418 1.23637 1.30386 1.37542 1.38457 2.16586 2.48143 2.75987 2.86050 2.92340 3.92252 3.94389 4.13864 4.14942 4.22783 4.26002 4.37464 4.43877 4.58169 4.60059 4.61050 4.68169 4.82397 4.85099 4.98394 5.13914 5.20468 5.51236 5.56168 5.66911 5.87986 6.08638 6.21133 6.46575 6.73908 7.05273 8.64432 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.006906 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.746731 B = 4053.485407 C = 4587.659994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.124 3.876 4 C -0.152 4.152 5 C -0.066 4.066 6 C -0.164 4.164 7 C -0.084 4.084 8 C -0.214 4.214 9 C 0.129 3.871 10 O -0.320 6.320 11 C 0.185 3.815 12 H 0.054 0.946 13 C -0.537 4.537 14 H 0.045 0.955 15 C 0.038 3.962 16 N -0.919 5.919 17 Si 0.918 3.082 18 H -0.264 1.264 19 H -0.268 1.268 20 H -0.233 1.233 21 C -0.036 4.036 22 Cl -0.206 7.206 23 H 0.109 0.891 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.145 0.855 31 H 0.122 0.878 32 H 0.278 0.722 33 H 0.102 0.898 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -13.371 5.771 14.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.048 3.952 4 C -0.153 4.153 5 C -0.084 4.084 6 C -0.182 4.182 7 C -0.102 4.102 8 C -0.233 4.233 9 C 0.083 3.917 10 O -0.234 6.234 11 C 0.129 3.871 12 H 0.072 0.928 13 C -0.575 4.575 14 H 0.063 0.937 15 C -0.164 4.164 16 N -0.556 5.556 17 Si 0.739 3.261 18 H -0.189 1.189 19 H -0.193 1.193 20 H -0.156 1.156 21 C -0.099 4.099 22 Cl -0.180 7.180 23 H 0.127 0.873 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.163 0.837 29 H 0.170 0.830 30 H 0.163 0.837 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.561 -13.382 5.746 14.647 hybrid contribution 0.393 1.033 -0.220 1.127 sum 1.954 -12.349 5.526 13.670 Atomic orbital electron populations 1.22958 0.79290 1.04200 1.00659 1.87746 1.21516 1.27180 1.95598 1.20796 0.89719 0.84436 1.00254 1.19177 0.94416 0.91892 1.09798 1.20947 0.95186 0.95942 0.96294 1.21316 0.93190 0.99366 1.04300 1.21225 1.00960 0.91170 0.96827 1.21381 0.93379 0.99797 1.08722 1.19091 0.92079 0.85109 0.95418 1.86114 1.37600 1.12351 1.87301 1.20600 0.91650 0.82960 0.91930 0.92824 1.20828 0.95025 1.11886 1.29720 0.93685 1.25693 1.03759 0.93762 0.93161 1.69962 1.38296 1.14126 1.33179 0.86164 0.79360 0.79436 0.81094 1.18898 1.19253 1.15553 1.25654 0.99870 0.92208 0.92149 1.98668 1.83323 1.61879 1.74151 0.87295 0.93440 0.93740 0.93150 0.92632 0.83675 0.82979 0.83698 0.86073 0.91291 0.88008 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 11.01 113.37 1.25 1.77 16 2 O -0.40 -11.51 9.18 -148.98 -1.37 -12.88 16 3 C 0.12 4.13 5.80 71.24 0.41 4.55 16 4 C -0.15 -5.42 5.89 -19.77 -0.12 -5.54 16 5 C -0.07 -1.97 9.37 22.25 0.21 -1.77 16 6 C -0.16 -4.35 10.04 22.28 0.22 -4.12 16 7 C -0.08 -2.45 10.04 22.26 0.22 -2.23 16 8 C -0.21 -7.76 7.25 22.36 0.16 -7.60 16 9 C 0.13 5.13 6.05 22.50 0.14 5.27 16 10 O -0.32 -14.47 9.10 -92.49 -0.84 -15.31 16 11 C 0.18 8.40 1.69 29.85 0.05 8.45 16 12 H 0.05 2.41 2.90 -2.39 -0.01 2.40 16 13 C -0.54 -29.22 9.23 25.60 0.24 -28.98 16 14 H 0.04 2.78 8.06 -2.91 -0.02 2.75 16 15 C 0.04 2.06 5.47 84.66 0.46 2.52 16 16 N -0.92 -53.05 13.96 21.45 0.30 -52.75 16 17 Si 0.92 39.23 26.38 68.60 1.81 41.04 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.23 -8.98 5.98 99.48 0.59 -8.39 16 21 C -0.04 -1.43 5.96 71.98 0.43 -1.00 16 22 Cl -0.21 -7.40 25.88 -2.72 -0.07 -7.47 16 23 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.15 3.85 7.00 -2.91 -0.02 3.83 16 29 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 30 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.12 4.56 5.08 -2.91 -0.01 4.55 16 32 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.10 3.90 6.92 -2.38 -0.02 3.88 16 34 H 0.10 3.75 8.14 -2.39 -0.02 3.74 16 Total: -1.00 -61.30 295.75 4.50 -56.80 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.99 Total: 19.24 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 3.68 Total: -28.67 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.30 Total: -52.75 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -2.21 Total: -28.19 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.81 Total: 41.04 kcal Atomic # 17 Polarization: -7.40 SS G_CDS: -0.07 Total: -7.47 kcal Total: -61.30 4.50 -56.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229252375.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.695 kcal (2) G-P(sol) polarization free energy of solvation -61.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds