Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00032 * 2 1 4 4 C 1.53004 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46906 * 184.99977 * 4 3 2 6 6 C 1.53001 * 109.46696 * 304.99830 * 4 3 2 7 7 Cl 1.80301 * 109.46828 * 185.00107 * 6 4 3 8 8 O 1.42895 * 109.47000 * 64.99415 * 4 3 2 9 9 C 1.35648 * 116.99610 * 141.58735 * 8 4 3 10 10 C 1.38443 * 120.26548 * 5.35285 * 9 8 4 11 11 C 1.38312 * 120.05251 * 179.74625 * 10 9 8 12 12 C 1.38822 * 120.58775 * 0.55045 * 11 10 9 13 13 C 1.36491 * 120.53856 * 359.70361 * 12 11 10 14 14 C 1.40732 * 119.92985 * 0.02562 * 13 12 11 15 15 C 1.41148 * 120.28848 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00211 * 151.42229 * 15 14 13 17 17 C 1.39932 * 119.99893 * 331.41392 * 15 14 13 18 18 N 1.30860 * 120.00270 * 348.89663 * 17 15 14 19 19 Si 1.86802 * 119.99866 * 168.89492 * 17 15 14 20 20 H 1.48503 * 109.47127 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47459 * 120.00027 * 19 17 15 22 22 H 1.48506 * 109.47304 * 240.00141 * 19 17 15 23 23 H 1.09002 * 109.47475 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47356 * 60.00466 * 1 2 3 25 25 H 1.09005 * 109.47536 * 300.00414 * 1 2 3 26 26 H 1.09001 * 109.46975 * 299.99620 * 3 2 1 27 27 H 1.09004 * 109.47542 * 59.99772 * 3 2 1 28 28 H 1.09005 * 109.47176 * 304.99707 * 6 4 3 29 29 H 1.08996 * 109.47619 * 64.99820 * 6 4 3 30 30 H 1.08008 * 119.97774 * 0.02562 * 10 9 8 31 31 H 1.08000 * 119.70760 * 180.27640 * 11 10 9 32 32 H 1.07999 * 119.73271 * 179.71865 * 12 11 10 33 33 H 1.07998 * 120.03617 * 179.97438 * 13 12 11 34 34 H 0.97002 * 120.00213 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9784 2.1765 0.0889 6 6 3.9789 0.3193 1.1807 7 17 5.7797 0.2972 1.2668 8 8 3.9648 0.5795 -1.2219 9 6 5.1042 1.0598 -1.7797 10 6 5.8579 2.0129 -1.1164 11 6 7.0217 2.4957 -1.6869 12 6 7.4402 2.0414 -2.9302 13 6 6.7129 1.1060 -3.6076 14 6 5.5281 0.5954 -3.0453 15 6 4.7704 -0.3725 -3.7390 16 1 4.1716 -1.0845 -3.1904 17 6 4.7949 -0.4096 -5.1376 18 7 5.3375 0.5741 -5.8089 19 14 4.0531 -1.8632 -6.0466 20 1 3.5079 -2.8349 -5.0649 21 1 2.9603 -1.3878 -6.9325 22 1 5.1021 -2.5230 -6.8650 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 3.5760 0.7328 2.1054 29 1 3.6091 -0.6970 1.0458 30 1 5.5393 2.3765 -0.1505 31 1 7.6078 3.2359 -1.1625 32 1 8.3488 2.4312 -3.3648 33 1 7.0458 0.7586 -4.5745 34 1 5.3548 0.5482 -6.7784 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = -69.379797 kcal Electronic energy + Delta-G solvation = -18849.293559 eV Core-core repulsion = 15773.594180 eV Total energy + Delta-G solvation = -3075.699378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.13026 -37.63847 -36.15526 -35.35128 -33.47085 -31.73856 -29.47468 -28.40461 -27.08397 -25.52044 -25.00847 -22.27176 -20.67991 -19.78320 -17.65339 -16.85080 -16.15786 -15.73979 -15.46943 -15.01192 -14.37696 -14.17305 -14.07742 -13.51562 -13.24372 -12.74599 -12.54554 -12.27275 -11.92559 -11.78954 -11.36962 -11.11175 -11.07287 -10.95351 -10.70856 -10.49234 -10.32711 -10.04737 -9.71238 -9.58915 -9.44157 -9.23822 -9.10598 -7.30186 -6.86272 -6.54645 -4.15001 2.62156 2.84715 3.09820 3.16469 3.24059 3.27987 3.83544 4.06845 4.12134 4.76695 4.85701 5.07298 5.21846 5.30199 5.37199 5.42678 5.61251 5.69202 5.71241 5.79236 5.95517 6.21901 6.41110 6.56189 7.03558 7.18876 7.23525 7.41232 7.48329 7.83947 7.89010 8.17231 8.33576 8.50563 8.82991 8.98828 9.17762 10.36966 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.008169 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.630203 B = 3426.658164 C = 4795.499149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.065 3.935 4 C 0.075 3.925 5 H 0.094 0.906 6 C -0.048 4.048 7 Cl -0.172 7.172 8 O -0.283 6.283 9 C 0.014 3.986 10 C -0.167 4.167 11 C -0.209 4.209 12 C -0.130 4.130 13 C -0.140 4.140 14 C 0.099 3.901 15 C -0.444 4.444 16 H 0.081 0.919 17 C 0.070 3.930 18 N -0.809 5.809 19 Si 0.908 3.092 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.275 1.275 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 1.144 9.921 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C -0.012 4.012 4 C 0.017 3.983 5 H 0.111 0.889 6 C -0.112 4.112 7 Cl -0.145 7.145 8 O -0.198 6.198 9 C -0.030 4.030 10 C -0.186 4.186 11 C -0.229 4.229 12 C -0.149 4.149 13 C -0.159 4.159 14 C 0.096 3.904 15 C -0.474 4.474 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.436 5.436 19 Si 0.733 3.267 20 H -0.184 1.184 21 H -0.202 1.202 22 H -0.200 1.200 23 H 0.103 0.897 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.471 0.881 9.604 11.614 hybrid contribution -0.400 -0.081 -0.292 0.502 sum -6.870 0.800 9.312 11.600 Atomic orbital electron populations 1.22727 0.81495 1.02670 0.99658 1.87987 1.19212 1.27103 1.95300 1.22717 0.91911 0.85607 1.00958 1.22506 0.92499 0.97662 0.85631 0.88859 1.24820 0.81419 1.05063 0.99861 1.98736 1.17691 1.99196 1.98888 1.86158 1.40361 1.58216 1.35022 1.19206 0.88081 0.99247 0.96455 1.20624 0.97785 1.01129 0.99039 1.20120 0.99259 1.05837 0.97662 1.20386 0.99338 0.99777 0.95407 1.20917 0.94264 0.99848 1.00910 1.17041 0.91976 0.93198 0.88181 1.19433 1.23909 1.13407 0.90692 0.90127 1.25851 0.94255 0.96201 0.98155 1.69820 1.36357 1.28932 1.08531 0.86259 0.79100 0.81859 0.79465 1.18444 1.20240 1.19997 0.89728 0.93958 0.94543 0.91616 0.92199 0.88997 0.87635 0.88409 0.89610 0.89554 0.85791 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.73 9.89 -40.09 -0.40 -6.13 16 3 C 0.07 0.92 5.81 37.16 0.22 1.13 16 4 C 0.08 1.27 2.56 -26.73 -0.07 1.20 16 5 H 0.09 1.52 5.48 -51.93 -0.28 1.24 16 6 C -0.05 -0.72 6.05 37.16 0.22 -0.50 16 7 Cl -0.17 -2.99 25.72 -51.86 -1.33 -4.32 16 8 O -0.28 -6.42 9.01 -23.50 -0.21 -6.63 16 9 C 0.01 0.35 6.25 -38.34 -0.24 0.11 16 10 C -0.17 -3.76 7.22 -39.48 -0.29 -4.05 16 11 C -0.21 -4.79 10.04 -39.34 -0.39 -5.18 16 12 C -0.13 -3.15 9.97 -40.00 -0.40 -3.55 16 13 C -0.14 -3.73 8.61 -39.27 -0.34 -4.07 16 14 C 0.10 2.71 5.56 -106.68 -0.59 2.12 16 15 C -0.44 -12.31 8.69 -37.84 -0.33 -12.64 16 16 H 0.08 2.25 7.69 -52.49 -0.40 1.85 16 17 C 0.07 1.83 5.25 -17.33 -0.09 1.74 16 18 N -0.81 -21.55 10.85 55.55 0.60 -20.94 16 19 Si 0.91 19.70 29.57 -169.99 -5.03 14.67 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.11 1.65 7.73 -51.93 -0.40 1.25 16 30 H 0.10 1.94 4.86 -52.48 -0.25 1.69 16 31 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.12 3.41 6.21 -52.49 -0.33 3.08 16 34 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -30.06 298.60 -7.24 -37.30 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.19 Total: 3.79 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -1.18 Total: -22.23 kcal Atomic # 7 Polarization: -21.55 SS G_CDS: 0.60 Total: -20.94 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.61 Total: -12.76 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Atomic # 17 Polarization: -2.99 SS G_CDS: -1.33 Total: -4.32 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.06 -7.24 -37.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.082 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds