Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42894 * 114.00032 * 2 1 4 4 C 1.53004 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46906 * 184.99977 * 4 3 2 6 6 C 1.53001 * 109.46696 * 304.99830 * 4 3 2 7 7 Cl 1.80301 * 109.46828 * 185.00107 * 6 4 3 8 8 O 1.42895 * 109.47000 * 64.99415 * 4 3 2 9 9 C 1.35648 * 116.99610 * 141.58735 * 8 4 3 10 10 C 1.38443 * 120.26548 * 5.35285 * 9 8 4 11 11 C 1.38312 * 120.05251 * 179.74625 * 10 9 8 12 12 C 1.38822 * 120.58775 * 0.55045 * 11 10 9 13 13 C 1.36491 * 120.53856 * 359.70361 * 12 11 10 14 14 C 1.40732 * 119.92985 * 0.02562 * 13 12 11 15 15 C 1.41148 * 120.28848 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00211 * 151.42229 * 15 14 13 17 17 C 1.39932 * 119.99893 * 331.41392 * 15 14 13 18 18 N 1.30860 * 120.00270 * 348.89663 * 17 15 14 19 19 Si 1.86802 * 119.99866 * 168.89492 * 17 15 14 20 20 H 1.48503 * 109.47127 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47459 * 120.00027 * 19 17 15 22 22 H 1.48506 * 109.47304 * 240.00141 * 19 17 15 23 23 H 1.09002 * 109.47475 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47356 * 60.00466 * 1 2 3 25 25 H 1.09005 * 109.47536 * 300.00414 * 1 2 3 26 26 H 1.09001 * 109.46975 * 299.99620 * 3 2 1 27 27 H 1.09004 * 109.47542 * 59.99772 * 3 2 1 28 28 H 1.09005 * 109.47176 * 304.99707 * 6 4 3 29 29 H 1.08996 * 109.47619 * 64.99820 * 6 4 3 30 30 H 1.08008 * 119.97774 * 0.02562 * 10 9 8 31 31 H 1.08000 * 119.70760 * 180.27640 * 11 10 9 32 32 H 1.07999 * 119.73271 * 179.71865 * 12 11 10 33 33 H 1.07998 * 120.03617 * 179.97438 * 13 12 11 34 34 H 0.97002 * 120.00213 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9784 2.1765 0.0889 6 6 3.9789 0.3193 1.1807 7 17 5.7797 0.2972 1.2668 8 8 3.9648 0.5795 -1.2219 9 6 5.1042 1.0598 -1.7797 10 6 5.8579 2.0129 -1.1164 11 6 7.0217 2.4957 -1.6869 12 6 7.4402 2.0414 -2.9302 13 6 6.7129 1.1060 -3.6076 14 6 5.5281 0.5954 -3.0453 15 6 4.7704 -0.3725 -3.7390 16 1 4.1716 -1.0845 -3.1904 17 6 4.7949 -0.4096 -5.1376 18 7 5.3375 0.5741 -5.8089 19 14 4.0531 -1.8632 -6.0466 20 1 3.5079 -2.8349 -5.0649 21 1 2.9603 -1.3878 -6.9325 22 1 5.1021 -2.5230 -6.8650 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 3.5760 0.7328 2.1054 29 1 3.6091 -0.6970 1.0458 30 1 5.5393 2.3765 -0.1505 31 1 7.6078 3.2359 -1.1625 32 1 8.3488 2.4312 -3.3648 33 1 7.0458 0.7586 -4.5745 34 1 5.3548 0.5482 -6.7784 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = -87.045711 kcal Electronic energy + Delta-G solvation = -18850.059610 eV Core-core repulsion = 15773.594180 eV Total energy + Delta-G solvation = -3076.465430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73575 -38.96003 -37.73940 -36.71067 -35.40838 -33.10108 -31.37336 -30.25195 -28.09202 -27.00083 -26.53415 -23.85069 -22.54302 -21.36388 -19.44851 -18.53875 -17.31937 -17.28648 -16.67444 -16.56684 -15.93904 -15.79085 -15.62642 -14.81312 -14.73760 -14.42745 -14.26851 -13.68958 -13.31997 -13.18625 -12.99477 -12.77060 -12.75505 -12.28321 -12.26407 -12.11116 -12.02566 -11.62655 -11.35426 -11.08576 -11.01780 -10.90065 -10.61011 -9.24239 -8.74152 -8.45745 -6.17795 0.99297 1.19344 1.37604 1.39474 1.50652 1.52699 2.25944 2.63120 2.81938 2.85029 3.58559 3.80603 3.95004 4.02529 4.26979 4.39131 4.46361 4.54239 4.55574 4.58347 4.64901 4.72735 4.81818 4.89531 5.16203 5.27975 5.52011 5.54324 5.94137 5.96995 6.22071 6.23201 6.38569 6.58528 6.88447 7.00465 7.30785 8.45813 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.008169 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.630203 B = 3426.658164 C = 4795.499149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.068 3.932 4 C 0.063 3.937 5 H 0.101 0.899 6 C -0.039 4.039 7 Cl -0.195 7.195 8 O -0.310 6.310 9 C 0.018 3.982 10 C -0.165 4.165 11 C -0.201 4.201 12 C -0.142 4.142 13 C -0.161 4.161 14 C 0.056 3.944 15 C -0.479 4.479 16 H 0.063 0.937 17 C 0.030 3.970 18 N -0.839 5.839 19 Si 0.977 3.023 20 H -0.265 1.265 21 H -0.266 1.266 22 H -0.264 1.264 23 H 0.092 0.908 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.137 0.863 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 1.848 11.585 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.009 4.009 4 C 0.006 3.994 5 H 0.119 0.881 6 C -0.102 4.102 7 Cl -0.169 7.169 8 O -0.225 6.225 9 C -0.026 4.026 10 C -0.184 4.184 11 C -0.221 4.221 12 C -0.160 4.160 13 C -0.181 4.181 14 C 0.053 3.947 15 C -0.510 4.510 16 H 0.081 0.919 17 C -0.182 4.182 18 N -0.468 5.468 19 Si 0.799 3.201 20 H -0.189 1.189 21 H -0.191 1.191 22 H -0.188 1.188 23 H 0.110 0.890 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.155 0.845 29 H 0.114 0.886 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.423 1.599 11.286 13.602 hybrid contribution -0.156 -0.209 -0.641 0.692 sum -7.579 1.391 10.645 13.141 Atomic orbital electron populations 1.22924 0.79468 1.03710 1.00927 1.87938 1.21498 1.27800 1.95582 1.22759 0.89816 0.85647 1.02638 1.22967 0.94595 0.97918 0.83946 0.88134 1.24929 0.79657 1.04588 1.01001 1.98736 1.20055 1.99189 1.98899 1.86119 1.39540 1.59241 1.37587 1.19285 0.88777 0.98821 0.95754 1.20923 0.97312 1.00177 0.99973 1.20572 0.99187 1.05356 0.96961 1.20648 0.99969 0.99321 0.96061 1.20864 0.95003 1.01391 1.00806 1.17424 0.92749 0.94376 0.90107 1.19462 1.25319 1.14361 0.91815 0.91914 1.26609 0.94534 0.98676 0.98363 1.69871 1.37426 1.30376 1.09087 0.85235 0.78643 0.78227 0.78029 1.18888 1.19090 1.18828 0.88957 0.94194 0.91677 0.92808 0.87493 0.84479 0.88602 0.85403 0.86288 0.87379 0.87718 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -11.73 9.89 -144.33 -1.43 -13.16 16 3 C 0.07 1.75 5.81 71.98 0.42 2.17 16 4 C 0.06 2.00 2.56 30.60 0.08 2.08 16 5 H 0.10 3.01 5.48 -2.39 -0.01 3.00 16 6 C -0.04 -1.07 6.05 71.98 0.44 -0.64 16 7 Cl -0.20 -6.46 25.72 -2.72 -0.07 -6.53 16 8 O -0.31 -14.13 9.01 -84.98 -0.77 -14.89 16 9 C 0.02 0.90 6.25 23.08 0.14 1.05 16 10 C -0.17 -7.21 7.22 22.34 0.16 -7.04 16 11 C -0.20 -8.84 10.04 22.43 0.23 -8.61 16 12 C -0.14 -6.80 9.97 22.00 0.22 -6.58 16 13 C -0.16 -8.85 8.61 22.47 0.19 -8.65 16 14 C 0.06 3.17 5.56 -21.20 -0.12 3.05 16 15 C -0.48 -27.77 8.69 23.40 0.20 -27.57 16 16 H 0.06 3.71 7.69 -2.91 -0.02 3.69 16 17 C 0.03 1.61 5.25 85.25 0.45 2.06 16 18 N -0.84 -46.19 10.85 21.83 0.24 -45.95 16 19 Si 0.98 41.48 29.57 68.60 2.03 43.51 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 23 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.14 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.10 2.86 7.73 -2.39 -0.02 2.85 16 30 H 0.13 4.72 4.86 -2.91 -0.01 4.71 16 31 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.10 6.04 6.21 -2.91 -0.02 6.02 16 34 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 Total: -1.00 -67.62 298.60 4.76 -62.86 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 1.10 Total: 21.10 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 3.66 Total: -46.94 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.24 Total: -45.95 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -2.19 Total: -28.05 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 17 Polarization: -6.46 SS G_CDS: -0.07 Total: -6.53 kcal Total: -67.62 4.76 -62.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.183 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds