Wall clock time and date at job start Mon Mar 30 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00414 * 2 1 4 4 C 1.52998 * 109.47510 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47553 * 175.00134 * 4 3 2 6 6 C 1.53000 * 109.46824 * 54.99950 * 4 3 2 7 7 Cl 1.80301 * 109.46945 * 175.00047 * 6 4 3 8 8 O 1.42904 * 109.47142 * 295.00020 * 4 3 2 9 9 C 1.35632 * 117.00023 * 217.63120 * 8 4 3 10 10 C 1.38448 * 120.26899 * 354.12229 * 9 8 4 11 11 C 1.38305 * 120.05187 * 179.97438 * 10 9 8 12 12 C 1.38815 * 120.59493 * 359.73000 * 11 10 9 13 13 C 1.36494 * 120.53351 * 0.55418 * 12 11 10 14 14 C 1.40724 * 119.92988 * 359.44356 * 13 12 11 15 15 C 1.41152 * 120.28973 * 180.25308 * 14 13 12 16 16 H 1.07998 * 120.00325 * 208.71267 * 15 14 13 17 17 C 1.39941 * 119.99633 * 28.71707 * 15 14 13 18 18 N 1.30857 * 120.00090 * 18.99191 * 17 15 14 19 19 Si 1.86800 * 119.99663 * 198.98756 * 17 15 14 20 20 H 1.48500 * 109.47125 * 90.00600 * 19 17 15 21 21 H 1.48508 * 109.47100 * 209.99975 * 19 17 15 22 22 H 1.48501 * 109.47415 * 329.99946 * 19 17 15 23 23 H 1.08998 * 109.46715 * 59.99642 * 1 2 3 24 24 H 1.08997 * 109.47311 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47083 * 299.99976 * 1 2 3 26 26 H 1.09007 * 109.46885 * 59.99806 * 3 2 1 27 27 H 1.08995 * 109.47016 * 300.00309 * 3 2 1 28 28 H 1.08999 * 109.47025 * 294.99972 * 6 4 3 29 29 H 1.08998 * 109.46934 * 55.00356 * 6 4 3 30 30 H 1.08002 * 119.97275 * 359.95777 * 10 9 8 31 31 H 1.08006 * 119.69853 * 179.97438 * 11 10 9 32 32 H 1.07999 * 119.73723 * 180.29719 * 12 11 10 33 33 H 1.08004 * 120.03192 * 179.72508 * 13 12 11 34 34 H 0.97002 * 119.99862 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1764 -0.0889 6 6 3.9790 0.3193 -1.1807 7 17 5.7798 0.2971 -1.2667 8 8 3.9649 0.5796 1.2220 9 6 5.1129 1.0487 1.7712 10 6 5.8796 1.9821 1.0948 11 6 7.0491 2.4579 1.6593 12 6 7.4638 2.0121 2.9068 13 6 6.7296 1.0879 3.5923 14 6 5.5358 0.5890 3.0389 15 6 4.7678 -0.3629 3.7435 16 1 4.1589 -1.0725 3.2031 17 6 4.7953 -0.3870 5.1425 18 7 5.2102 0.6612 5.8069 19 14 4.2397 -1.9156 6.0613 20 1 5.4013 -2.8169 6.2706 21 1 3.6739 -1.5238 7.3773 22 1 3.2024 -2.6212 5.2667 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.6091 -0.6971 -1.0456 29 1 3.5762 0.7327 -2.1053 30 1 5.5642 2.3389 0.1254 31 1 7.6431 3.1857 1.1264 32 1 8.3770 2.3964 3.3367 33 1 7.0621 0.7434 4.5604 34 1 5.2289 0.6446 6.7766 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:23 Heat of formation + Delta-G solvation = -87.655793 kcal Electronic energy + Delta-G solvation = -18848.379035 eV Core-core repulsion = 15771.887150 eV Total energy + Delta-G solvation = -3076.491885 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73320 -38.95952 -37.73710 -36.71151 -35.41512 -33.09941 -31.41840 -30.25321 -28.09281 -26.98936 -26.53310 -23.86431 -22.54328 -21.37819 -19.43057 -18.55218 -17.32287 -17.27655 -16.68284 -16.57436 -15.94480 -15.79653 -15.64647 -14.83507 -14.73402 -14.44285 -14.24553 -13.67373 -13.37054 -13.20208 -13.02108 -12.81938 -12.70865 -12.29343 -12.26858 -12.11420 -12.03326 -11.64535 -11.36285 -11.08480 -10.96389 -10.87943 -10.61050 -9.27228 -8.76260 -8.49944 -6.15977 0.99562 1.18459 1.37399 1.39452 1.50231 1.52183 2.25288 2.63283 2.79620 2.84099 3.58270 3.79801 3.94972 4.03049 4.27074 4.38981 4.46377 4.54244 4.55595 4.57390 4.64504 4.72353 4.81576 4.89428 5.14686 5.27448 5.48458 5.51784 5.92717 5.96234 6.21724 6.22233 6.38497 6.56852 6.86899 6.98711 7.31124 8.42528 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.008093 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.014053 B = 3458.787644 C = 4791.925526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.068 3.932 4 C 0.064 3.936 5 H 0.100 0.900 6 C -0.039 4.039 7 Cl -0.195 7.195 8 O -0.310 6.310 9 C 0.015 3.985 10 C -0.162 4.162 11 C -0.205 4.205 12 C -0.138 4.138 13 C -0.165 4.165 14 C 0.062 3.938 15 C -0.486 4.486 16 H 0.064 0.936 17 C 0.037 3.963 18 N -0.833 5.833 19 Si 0.972 3.028 20 H -0.263 1.263 21 H -0.266 1.266 22 H -0.264 1.264 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.137 0.863 30 H 0.129 0.871 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 1.650 -11.567 13.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.008 4.008 4 C 0.006 3.994 5 H 0.118 0.882 6 C -0.102 4.102 7 Cl -0.168 7.168 8 O -0.225 6.225 9 C -0.029 4.029 10 C -0.180 4.180 11 C -0.224 4.224 12 C -0.156 4.156 13 C -0.185 4.185 14 C 0.060 3.940 15 C -0.516 4.516 16 H 0.082 0.918 17 C -0.177 4.177 18 N -0.460 5.460 19 Si 0.794 3.206 20 H -0.188 1.188 21 H -0.191 1.191 22 H -0.188 1.188 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.155 0.845 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.097 1.424 -11.268 13.393 hybrid contribution -0.100 -0.245 0.660 0.711 sum -7.198 1.179 -10.607 12.873 Atomic orbital electron populations 1.22923 0.79468 1.03707 1.00923 1.87937 1.21499 1.27804 1.95582 1.22752 0.89807 0.85644 1.02627 1.22955 0.94595 0.97861 0.83952 0.88212 1.24936 0.79671 1.04593 1.01012 1.98736 1.20028 1.99160 1.98888 1.86114 1.38822 1.59825 1.37747 1.19264 0.88494 0.99362 0.95819 1.20956 0.97022 1.00283 0.99787 1.20546 0.99218 1.05736 0.96935 1.20614 0.99852 0.99138 0.95988 1.20668 0.95205 1.02180 1.00417 1.17380 0.92663 0.93872 0.90114 1.19406 1.25245 1.15202 0.91732 0.91825 1.26584 0.93495 0.99179 0.98402 1.69891 1.37602 1.29006 1.09487 0.85356 0.79280 0.78448 0.77522 1.18771 1.19084 1.18832 0.91650 0.88956 0.94228 0.92844 0.87472 0.88590 0.84479 0.85368 0.86291 0.87333 0.88678 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.76 16 2 O -0.41 -11.80 9.89 -144.35 -1.43 -13.22 16 3 C 0.07 1.77 5.81 71.98 0.42 2.19 16 4 C 0.06 2.03 2.56 30.59 0.08 2.11 16 5 H 0.10 3.00 5.55 -2.39 -0.01 2.99 16 6 C -0.04 -1.09 6.05 71.98 0.44 -0.65 16 7 Cl -0.19 -6.43 25.53 -2.72 -0.07 -6.50 16 8 O -0.31 -14.18 9.01 -84.82 -0.76 -14.95 16 9 C 0.02 0.75 6.25 23.08 0.14 0.89 16 10 C -0.16 -7.07 7.14 22.34 0.16 -6.91 16 11 C -0.21 -8.99 10.04 22.42 0.23 -8.77 16 12 C -0.14 -6.58 9.97 22.00 0.22 -6.37 16 13 C -0.16 -9.04 8.62 22.47 0.19 -8.85 16 14 C 0.06 3.52 5.53 -21.20 -0.12 3.40 16 15 C -0.49 -28.14 8.66 23.40 0.20 -27.94 16 16 H 0.06 3.77 7.74 -2.91 -0.02 3.74 16 17 C 0.04 1.97 5.07 85.25 0.43 2.40 16 18 N -0.83 -45.81 11.33 21.83 0.25 -45.56 16 19 Si 0.97 41.27 29.60 68.60 2.03 43.30 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.10 2.87 7.73 -2.39 -0.02 2.85 16 29 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.13 4.75 4.78 -2.91 -0.01 4.73 16 31 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.10 5.44 6.52 -2.91 -0.02 5.42 16 34 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 Total: -1.00 -67.60 298.96 4.76 -62.85 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 1.10 Total: 20.80 kcal Atomic # 6 Polarization: -50.36 SS G_CDS: 3.64 Total: -46.72 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.25 Total: -45.56 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -2.19 Total: -28.17 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 17 Polarization: -6.43 SS G_CDS: -0.07 Total: -6.50 kcal Total: -67.60 4.76 -62.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.809 kcal (2) G-P(sol) polarization free energy of solvation -67.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds