Wall clock time and date at job start Mon Mar 30 2020 01:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.46831 * 2 1 4 4 C 1.38291 * 119.99820 * 266.41144 * 3 2 1 5 5 C 1.38209 * 120.14187 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.15069 * 359.97438 * 5 4 3 7 7 C 1.38520 * 119.99730 * 0.27991 * 6 5 4 8 8 O 1.35996 * 120.07342 * 179.72860 * 7 6 5 9 9 C 1.38525 * 120.00338 * 86.43777 * 3 2 1 10 10 O 1.35990 * 120.06864 * 359.97438 * 9 3 2 11 11 C 1.42904 * 117.00171 * 106.59752 * 10 9 3 12 12 H 1.08993 * 109.46910 * 36.04788 * 11 10 9 13 13 C 1.50701 * 109.47268 * 156.05177 * 11 10 9 14 14 H 1.08001 * 119.99815 * 359.97438 * 13 11 10 15 15 C 1.37874 * 120.00051 * 179.97438 * 13 11 10 16 16 N 1.31514 * 119.99980 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00100 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46803 * 90.00029 * 17 15 13 19 19 H 1.48498 * 109.47147 * 210.00326 * 17 15 13 20 20 H 1.48500 * 109.47156 * 330.00486 * 17 15 13 21 21 C 1.53004 * 109.46892 * 276.05018 * 11 10 9 22 22 Cl 1.80298 * 109.46998 * 67.08185 * 21 11 10 23 23 H 1.09005 * 109.47434 * 60.00364 * 1 2 3 24 24 H 1.09003 * 109.47259 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47214 * 300.00184 * 1 2 3 26 26 H 1.09006 * 109.47144 * 240.00137 * 2 1 3 27 27 H 1.08997 * 109.47662 * 119.99863 * 2 1 3 28 28 H 1.07992 * 119.92943 * 0.02562 * 4 3 2 29 29 H 1.08009 * 119.92457 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.99785 * 180.02562 * 6 5 4 31 31 H 0.96697 * 114.00550 * 89.99433 * 8 7 6 32 32 H 0.96996 * 120.00207 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.46525 * 187.07675 * 21 11 10 34 34 H 1.08993 * 109.47117 * 307.08097 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3333 2.0478 -1.1953 5 6 2.7946 3.3506 -1.1987 6 6 2.9567 4.0332 -0.0070 7 6 2.6619 3.4093 1.1941 8 8 2.8259 4.0773 2.3672 9 6 2.1928 2.0988 1.1973 10 8 1.8971 1.4837 2.3736 11 6 2.9986 1.0848 3.1919 12 1 3.7958 1.8240 3.1137 13 6 2.5476 0.9822 4.6262 14 1 1.5224 1.2003 4.8868 15 6 3.4437 0.6100 5.6057 16 7 4.6922 0.3450 5.2884 17 14 2.8848 0.4836 7.3837 18 1 2.3991 -0.8937 7.6530 19 1 4.0249 0.7914 8.2840 20 1 1.7860 1.4524 7.6273 21 6 3.5168 -0.2758 2.7217 22 17 4.2467 -0.1069 1.0817 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.2077 1.5182 -2.1281 29 1 3.0292 3.8367 -2.1343 30 1 3.3170 5.0513 -0.0126 31 1 2.0421 4.5647 2.6553 32 1 5.3227 0.0835 5.9776 33 1 4.2716 -0.6380 3.4197 34 1 2.6901 -0.9849 2.6802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230371043.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:58 Heat of formation + Delta-G solvation = -95.438147 kcal Electronic energy + Delta-G solvation = -19399.684618 eV Core-core repulsion = 16322.855265 eV Total energy + Delta-G solvation = -3076.829353 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.22482 -38.51985 -37.79357 -36.49914 -35.29229 -34.43348 -31.53017 -29.97657 -29.55358 -27.25882 -24.80153 -23.97765 -22.43429 -21.82735 -19.08279 -18.71494 -18.41689 -17.21167 -16.89693 -16.36457 -15.87728 -15.30569 -15.04015 -14.89630 -14.61179 -14.27469 -13.94787 -13.83101 -13.63269 -13.09522 -12.96263 -12.88800 -12.75384 -12.37148 -12.25934 -12.16176 -11.98265 -11.70826 -11.55240 -11.04670 -10.95411 -10.68730 -10.34212 -9.42592 -9.10027 -8.32247 -6.47735 0.34580 0.43707 1.40417 1.41862 1.53923 1.64582 2.31358 2.62256 3.00340 3.32330 3.44286 3.93883 4.09368 4.33595 4.39981 4.44114 4.47175 4.59228 4.61006 4.68498 4.80667 5.00246 5.08397 5.13636 5.27905 5.33655 5.46548 5.49508 5.55101 5.58705 5.75112 5.93697 5.96546 6.54638 6.81059 7.08014 7.27267 8.74347 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.007404 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.246165 B = 3780.744436 C = 4126.280344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.075 4.075 4 C -0.122 4.122 5 C -0.112 4.112 6 C -0.149 4.149 7 C 0.052 3.948 8 O -0.508 6.508 9 C 0.065 3.935 10 O -0.343 6.343 11 C 0.241 3.759 12 H 0.002 0.998 13 C -0.537 4.537 14 H 0.064 0.936 15 C 0.021 3.979 16 N -0.914 5.914 17 Si 0.977 3.023 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.031 4.031 22 Cl -0.218 7.218 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.143 0.857 31 H 0.397 0.603 32 H 0.273 0.727 33 H 0.108 0.892 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 2.376 -11.148 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 C -0.075 4.075 4 C -0.140 4.140 5 C -0.129 4.129 6 C -0.168 4.168 7 C 0.007 3.993 8 O -0.319 6.319 9 C 0.020 3.980 10 O -0.261 6.261 11 C 0.186 3.814 12 H 0.020 0.980 13 C -0.575 4.575 14 H 0.083 0.917 15 C -0.179 4.179 16 N -0.551 5.551 17 Si 0.801 3.199 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.193 1.193 21 C -0.094 4.094 22 Cl -0.192 7.192 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.169 0.831 29 H 0.177 0.823 30 H 0.161 0.839 31 H 0.254 0.746 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.657 2.051 -11.120 12.229 hybrid contribution -0.110 0.207 1.201 1.223 sum -4.767 2.258 -9.920 11.235 Atomic orbital electron populations 1.21674 0.94088 1.02116 1.01498 1.20602 0.96509 0.91933 1.02778 1.20113 0.99002 0.96543 0.91858 1.21222 1.00097 0.95504 0.97157 1.21291 0.99023 0.94513 0.98106 1.21495 1.02669 1.01464 0.91158 1.19286 1.01760 0.91697 0.86575 1.84839 1.41463 1.67752 1.37821 1.19414 0.99953 0.91524 0.87107 1.85961 1.34624 1.76216 1.29258 1.19888 0.83915 0.89484 0.88129 0.98041 1.21202 0.97647 1.48199 0.90466 0.91737 1.25769 0.94518 0.93760 1.03868 1.69930 1.04047 1.45573 1.35596 0.85253 0.78019 0.78997 0.77631 1.19213 1.20347 1.19267 1.25504 0.99892 1.02430 0.81535 1.98619 1.86759 1.98590 1.35240 0.91503 0.91352 0.94466 0.90058 0.92310 0.83137 0.82258 0.83925 0.74576 0.91784 0.87373 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.89 71.98 0.71 -3.07 16 2 C -0.08 -2.60 4.68 29.85 0.14 -2.46 16 3 C -0.07 -2.57 3.53 -19.78 -0.07 -2.64 16 4 C -0.12 -3.38 9.68 22.28 0.22 -3.17 16 5 C -0.11 -2.88 10.04 22.27 0.22 -2.66 16 6 C -0.15 -4.59 9.98 22.35 0.22 -4.37 16 7 C 0.05 2.01 6.44 22.57 0.15 2.15 16 8 O -0.51 -20.50 12.59 -79.66 -1.00 -21.51 16 9 C 0.06 2.67 4.69 22.57 0.11 2.78 16 10 O -0.34 -16.53 8.70 -79.59 -0.69 -17.22 16 11 C 0.24 12.64 2.19 29.85 0.07 12.70 16 12 H 0.00 0.11 7.26 -2.39 -0.02 0.09 16 13 C -0.54 -29.72 8.89 25.60 0.23 -29.49 16 14 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 15 C 0.02 1.13 5.28 84.65 0.45 1.58 16 16 N -0.91 -50.67 11.29 21.45 0.24 -50.43 16 17 Si 0.98 42.16 29.54 68.60 2.03 44.18 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 C -0.03 -1.48 5.43 71.98 0.39 -1.09 16 22 Cl -0.22 -9.24 23.61 -2.72 -0.06 -9.30 16 23 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 2.24 8.06 -2.38 -0.02 2.22 16 27 H 0.06 2.21 4.38 -2.39 -0.01 2.20 16 28 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.40 12.26 9.06 -74.06 -0.67 11.59 16 32 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.11 5.72 5.91 -2.39 -0.01 5.70 16 34 H 0.08 3.55 7.30 -2.39 -0.02 3.53 16 Total: -1.00 -63.53 294.47 3.78 -59.75 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.45 Total: 24.26 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 2.83 Total: -29.73 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.24 Total: -50.43 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -1.70 Total: -38.73 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 17 Polarization: -9.24 SS G_CDS: -0.06 Total: -9.30 kcal Total: -63.53 3.78 -59.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230371043.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.689 kcal (2) G-P(sol) polarization free energy of solvation -63.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds