Wall clock time and date at job start Mon Mar 30 2020 01:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47706 * 2 1 4 4 C 1.38161 * 119.99886 * 265.02570 * 3 2 1 5 5 C 1.38671 * 119.99996 * 179.97438 * 4 3 2 6 6 O 1.35988 * 119.99986 * 179.97438 * 5 4 3 7 7 C 1.38724 * 119.99861 * 359.74526 * 5 4 3 8 8 C 1.38105 * 119.99998 * 0.50394 * 7 5 4 9 9 C 1.38676 * 120.00362 * 84.99232 * 3 2 1 10 10 O 1.35980 * 119.99522 * 0.05297 * 9 3 2 11 11 C 1.42900 * 116.99906 * 176.69487 * 10 9 3 12 12 H 1.09002 * 109.47035 * 26.91594 * 11 10 9 13 13 C 1.50702 * 109.47158 * 146.91081 * 11 10 9 14 14 H 1.07999 * 119.99932 * 0.02562 * 13 11 10 15 15 C 1.37881 * 119.99803 * 180.02562 * 13 11 10 16 16 N 1.31509 * 120.00331 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99716 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47049 * 90.00248 * 17 15 13 19 19 H 1.48502 * 109.47371 * 209.99977 * 17 15 13 20 20 H 1.48497 * 109.47463 * 330.00258 * 17 15 13 21 21 C 1.52995 * 109.47425 * 266.91376 * 11 10 9 22 22 Cl 1.80303 * 109.47193 * 64.99829 * 21 11 10 23 23 H 1.09006 * 109.46876 * 59.99985 * 1 2 3 24 24 H 1.08995 * 109.47226 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46960 * 300.00603 * 1 2 3 26 26 H 1.09002 * 109.46746 * 239.99381 * 2 1 3 27 27 H 1.09006 * 109.46876 * 120.00015 * 2 1 3 28 28 H 1.07996 * 119.99542 * 359.94942 * 4 3 2 29 29 H 0.96701 * 113.99591 * 89.99873 * 6 5 4 30 30 H 1.08001 * 120.00121 * 180.27973 * 7 5 4 31 31 H 1.07997 * 120.00058 * 179.77180 * 8 7 5 32 32 H 0.96995 * 120.00389 * 180.02562 * 16 15 13 33 33 H 1.09001 * 109.47540 * 184.99597 * 21 11 10 34 34 H 1.09003 * 109.47474 * 304.99908 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3606 2.0374 -1.1920 5 6 2.8225 3.3449 -1.1921 6 8 3.1459 3.9517 -2.3653 7 6 2.9500 4.0355 0.0043 8 6 2.6269 3.4174 1.1962 9 6 2.1649 2.1094 1.1963 10 8 1.8423 1.5023 2.3696 11 6 2.0715 2.2449 3.5688 12 1 2.0190 3.3117 3.3512 13 6 1.0214 1.8881 4.5890 14 1 0.2557 1.1662 4.3461 15 6 1.0381 2.4834 5.8326 16 7 1.9701 3.3629 6.1282 17 14 -0.2632 2.0406 7.0975 18 1 0.2103 0.8943 7.9143 19 1 -0.5126 3.2081 7.9807 20 1 -1.5217 1.6673 6.4033 21 6 3.4567 1.9049 4.1223 22 17 4.7206 2.4656 2.9651 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2578 1.5009 -2.1236 29 1 2.4097 4.4203 -2.7818 30 1 3.3054 5.0554 0.0038 31 1 2.7297 3.9538 2.1279 32 1 1.9820 3.7814 7.0032 33 1 3.5966 2.4022 5.0821 34 1 3.5397 0.8263 4.2564 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234102473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:05 Heat of formation + Delta-G solvation = -81.473067 kcal Electronic energy + Delta-G solvation = -18861.101891 eV Core-core repulsion = 15784.878109 eV Total energy + Delta-G solvation = -3076.223782 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.82025 -37.91407 -35.93136 -34.77488 -33.42163 -33.35018 -29.67327 -29.40719 -27.67040 -25.35886 -23.62621 -22.81720 -20.77984 -20.45039 -17.59174 -17.28781 -16.89435 -15.70961 -15.10856 -14.85893 -14.40685 -14.05757 -13.63496 -13.55127 -13.32552 -12.77851 -12.45694 -12.23694 -12.12650 -11.95756 -11.41949 -11.26296 -11.12043 -11.04061 -10.91692 -10.65987 -10.48351 -10.35573 -10.02534 -9.60891 -9.41223 -9.14055 -8.69976 -8.33728 -7.21497 -6.46752 -4.54362 1.77307 1.85878 3.10194 3.18446 3.21994 3.38801 4.01124 4.10168 4.39518 4.61837 4.89952 5.17456 5.31073 5.50864 5.62059 5.77762 5.79896 5.98677 6.07122 6.18292 6.22329 6.26292 6.34905 6.45013 6.62025 6.68447 6.78385 6.90053 6.97187 7.06802 7.23940 7.51351 7.73488 7.96611 8.31384 8.64842 9.13652 10.60409 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.006540 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.264103 B = 4279.996124 C = 4928.706183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.118 4.118 4 C -0.110 4.110 5 C 0.042 3.958 6 O -0.501 6.501 7 C -0.111 4.111 8 C -0.176 4.176 9 C 0.156 3.844 10 O -0.305 6.305 11 C 0.205 3.795 12 H 0.051 0.949 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.916 3.084 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.037 4.037 22 Cl -0.239 7.239 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.376 0.624 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.272 0.728 33 H 0.133 0.867 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -1.395 -9.181 9.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.119 4.119 4 C -0.129 4.129 5 C -0.002 4.002 6 O -0.310 6.310 7 C -0.129 4.129 8 C -0.194 4.194 9 C 0.108 3.892 10 O -0.218 6.218 11 C 0.150 3.850 12 H 0.068 0.932 13 C -0.558 4.558 14 H 0.095 0.905 15 C -0.140 4.140 16 N -0.526 5.526 17 Si 0.742 3.258 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.099 4.099 22 Cl -0.214 7.214 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.230 0.770 30 H 0.138 0.862 31 H 0.159 0.841 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.160 -1.667 -8.928 9.084 hybrid contribution -0.739 0.384 0.689 1.081 sum -0.899 -1.283 -8.239 8.387 Atomic orbital electron populations 1.21703 0.95164 1.01069 1.02103 1.20272 0.95906 0.92278 1.02249 1.19024 1.05427 0.97094 0.90320 1.20899 0.99980 0.94790 0.97220 1.18186 1.04767 0.92181 0.85083 1.84877 1.39173 1.71410 1.35507 1.21088 1.00340 0.99824 0.91670 1.21392 1.03601 0.95255 0.99169 1.18922 0.92538 0.90735 0.86973 1.86149 1.78569 1.44356 1.12703 1.20531 0.91528 0.93270 0.79702 0.93175 1.21011 1.11563 1.26283 0.96976 0.90548 1.24978 0.96545 0.94165 0.98263 1.69791 1.33131 1.26813 1.22875 0.86186 0.81149 0.78177 0.80281 1.20145 1.20770 1.19390 1.25763 0.87039 1.01299 0.95823 1.98650 1.62354 1.92040 1.68318 0.93376 0.93017 0.91809 0.92052 0.90526 0.85933 0.77018 0.86176 0.84121 0.91788 0.84929 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.90 37.16 0.37 -1.67 16 2 C -0.07 -1.08 5.78 -27.89 -0.16 -1.24 16 3 C -0.12 -2.07 5.15 -104.49 -0.54 -2.61 16 4 C -0.11 -1.77 9.62 -39.45 -0.38 -2.15 16 5 C 0.04 0.68 6.70 -39.24 -0.26 0.42 16 6 O -0.50 -7.08 13.51 -19.70 -0.27 -7.35 16 7 C -0.11 -1.92 9.98 -39.45 -0.39 -2.31 16 8 C -0.18 -3.43 7.04 -39.45 -0.28 -3.71 16 9 C 0.16 3.13 5.94 -39.24 -0.23 2.90 16 10 O -0.30 -6.80 8.86 -19.68 -0.17 -6.97 16 11 C 0.20 4.84 2.19 -27.88 -0.06 4.78 16 12 H 0.05 1.26 5.39 -51.93 -0.28 0.98 16 13 C -0.52 -13.21 8.89 -34.44 -0.31 -13.52 16 14 H 0.08 1.95 7.81 -52.49 -0.41 1.54 16 15 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 16 N -0.89 -22.75 11.30 55.43 0.63 -22.12 16 17 Si 0.92 19.56 29.54 -169.99 -5.02 14.53 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 C -0.04 -0.82 6.17 37.16 0.23 -0.60 16 22 Cl -0.24 -4.98 25.60 -51.86 -1.33 -6.31 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 27 H 0.08 1.28 7.69 -51.93 -0.40 0.88 16 28 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 29 H 0.38 3.41 9.06 45.56 0.41 3.82 16 30 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.14 2.94 5.10 -52.49 -0.27 2.67 16 32 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.13 3.20 5.96 -51.93 -0.31 2.89 16 34 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -26.75 298.82 -7.11 -33.86 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -3.34 Total: 8.06 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.11 Total: -18.21 kcal Atomic # 7 Polarization: -22.75 SS G_CDS: 0.63 Total: -22.12 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.44 Total: -14.32 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 17 Polarization: -4.98 SS G_CDS: -1.33 Total: -6.31 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.75 -7.11 -33.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234102473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.608 kcal (2) G-P(sol) polarization free energy of solvation -26.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds