Wall clock time and date at job start Mon Mar 30 2020 01:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47706 * 2 1 4 4 C 1.38161 * 119.99886 * 265.02570 * 3 2 1 5 5 C 1.38671 * 119.99996 * 179.97438 * 4 3 2 6 6 O 1.35988 * 119.99986 * 179.97438 * 5 4 3 7 7 C 1.38724 * 119.99861 * 359.74526 * 5 4 3 8 8 C 1.38105 * 119.99998 * 0.50394 * 7 5 4 9 9 C 1.38676 * 120.00362 * 84.99232 * 3 2 1 10 10 O 1.35980 * 119.99522 * 0.05297 * 9 3 2 11 11 C 1.42900 * 116.99906 * 176.69487 * 10 9 3 12 12 H 1.09002 * 109.47035 * 26.91594 * 11 10 9 13 13 C 1.50702 * 109.47158 * 146.91081 * 11 10 9 14 14 H 1.07999 * 119.99932 * 0.02562 * 13 11 10 15 15 C 1.37881 * 119.99803 * 180.02562 * 13 11 10 16 16 N 1.31509 * 120.00331 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99716 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47049 * 90.00248 * 17 15 13 19 19 H 1.48502 * 109.47371 * 209.99977 * 17 15 13 20 20 H 1.48497 * 109.47463 * 330.00258 * 17 15 13 21 21 C 1.52995 * 109.47425 * 266.91376 * 11 10 9 22 22 Cl 1.80303 * 109.47193 * 64.99829 * 21 11 10 23 23 H 1.09006 * 109.46876 * 59.99985 * 1 2 3 24 24 H 1.08995 * 109.47226 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46960 * 300.00603 * 1 2 3 26 26 H 1.09002 * 109.46746 * 239.99381 * 2 1 3 27 27 H 1.09006 * 109.46876 * 120.00015 * 2 1 3 28 28 H 1.07996 * 119.99542 * 359.94942 * 4 3 2 29 29 H 0.96701 * 113.99591 * 89.99873 * 6 5 4 30 30 H 1.08001 * 120.00121 * 180.27973 * 7 5 4 31 31 H 1.07997 * 120.00058 * 179.77180 * 8 7 5 32 32 H 0.96995 * 120.00389 * 180.02562 * 16 15 13 33 33 H 1.09001 * 109.47540 * 184.99597 * 21 11 10 34 34 H 1.09003 * 109.47474 * 304.99908 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3606 2.0374 -1.1920 5 6 2.8225 3.3449 -1.1921 6 8 3.1459 3.9517 -2.3653 7 6 2.9500 4.0355 0.0043 8 6 2.6269 3.4174 1.1962 9 6 2.1649 2.1094 1.1963 10 8 1.8423 1.5023 2.3696 11 6 2.0715 2.2449 3.5688 12 1 2.0190 3.3117 3.3512 13 6 1.0214 1.8881 4.5890 14 1 0.2557 1.1662 4.3461 15 6 1.0381 2.4834 5.8326 16 7 1.9701 3.3629 6.1282 17 14 -0.2632 2.0406 7.0975 18 1 0.2103 0.8943 7.9143 19 1 -0.5126 3.2081 7.9807 20 1 -1.5217 1.6673 6.4033 21 6 3.4567 1.9049 4.1223 22 17 4.7206 2.4656 2.9651 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2578 1.5009 -2.1236 29 1 2.4097 4.4203 -2.7818 30 1 3.3054 5.0554 0.0038 31 1 2.7297 3.9538 2.1279 32 1 1.9820 3.7814 7.0032 33 1 3.5966 2.4022 5.0821 34 1 3.5397 0.8263 4.2564 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234102473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:05 Heat of formation + Delta-G solvation = -96.855863 kcal Electronic energy + Delta-G solvation = -18861.768939 eV Core-core repulsion = 15784.878109 eV Total energy + Delta-G solvation = -3076.890830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25644 -39.33285 -37.32721 -36.47983 -35.25052 -34.65356 -31.46589 -30.70398 -29.08467 -27.27377 -24.92269 -24.35874 -22.17252 -21.97467 -18.99163 -18.74154 -18.66480 -17.27271 -16.63660 -16.39142 -15.91060 -15.56577 -15.22724 -14.84535 -14.63071 -14.33581 -13.96441 -13.85046 -13.62761 -13.45957 -12.98462 -12.83102 -12.78163 -12.57302 -12.26192 -12.21881 -11.99029 -11.71193 -11.58445 -11.27214 -11.06987 -10.88258 -10.54972 -9.70017 -8.68459 -8.37129 -6.52724 0.40502 0.49330 1.39705 1.43153 1.53826 1.60565 2.27503 2.72804 2.77225 2.98486 3.40776 3.88020 3.97563 4.27447 4.28433 4.33848 4.40429 4.49181 4.60221 4.72004 4.82662 4.90860 5.06305 5.13138 5.16296 5.23548 5.42076 5.46030 5.52478 5.53776 5.66084 5.84370 5.88261 6.48506 6.83130 6.98639 7.20236 8.69379 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.006540 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.264103 B = 4279.996124 C = 4928.706183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.118 4.118 4 C -0.107 4.107 5 C 0.058 3.942 6 O -0.503 6.503 7 C -0.120 4.120 8 C -0.187 4.187 9 C 0.121 3.879 10 O -0.318 6.318 11 C 0.212 3.788 12 H 0.030 0.970 13 C -0.545 4.545 14 H 0.067 0.933 15 C 0.026 3.974 16 N -0.910 5.910 17 Si 0.976 3.024 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.027 4.027 22 Cl -0.223 7.223 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.155 0.845 29 H 0.403 0.597 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.275 0.725 33 H 0.116 0.884 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.124 -1.887 -10.952 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.119 4.119 4 C -0.125 4.125 5 C 0.013 3.987 6 O -0.315 6.315 7 C -0.139 4.139 8 C -0.206 4.206 9 C 0.075 3.925 10 O -0.232 6.232 11 C 0.156 3.844 12 H 0.048 0.952 13 C -0.582 4.582 14 H 0.085 0.915 15 C -0.175 4.175 16 N -0.548 5.548 17 Si 0.800 3.200 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.193 1.193 21 C -0.090 4.090 22 Cl -0.197 7.197 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.173 0.827 29 H 0.261 0.739 30 H 0.152 0.848 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.493 -2.144 -10.730 10.954 hybrid contribution -0.582 0.607 1.044 1.340 sum -1.075 -1.537 -9.687 9.867 Atomic orbital electron populations 1.21653 0.94315 1.02186 1.01330 1.20336 0.96600 0.91045 1.02736 1.19363 1.04638 0.98026 0.89870 1.21211 0.98854 0.94759 0.97719 1.18225 1.02753 0.92279 0.85423 1.84808 1.40790 1.71577 1.34358 1.21260 1.00514 1.00623 0.91477 1.21260 1.04849 0.95289 0.99207 1.19242 0.94822 0.91517 0.86966 1.86092 1.79592 1.44467 1.13050 1.20240 0.91643 0.92228 0.80247 0.95236 1.21231 1.12244 1.26648 0.98080 0.91483 1.25713 0.98256 0.93828 0.99675 1.69882 1.34225 1.27289 1.23374 0.85264 0.78708 0.78127 0.77933 1.19385 1.20227 1.19299 1.25436 0.87284 1.00951 0.95295 1.98641 1.61448 1.91934 1.67704 0.91778 0.90995 0.94864 0.89025 0.92495 0.82716 0.73906 0.84795 0.86376 0.91519 0.86583 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.90 71.98 0.71 -3.00 16 2 C -0.07 -2.04 5.78 29.85 0.17 -1.87 16 3 C -0.12 -4.01 5.15 -19.78 -0.10 -4.11 16 4 C -0.11 -3.12 9.62 22.35 0.21 -2.90 16 5 C 0.06 1.73 6.70 22.49 0.15 1.88 16 6 O -0.50 -12.31 13.51 -93.42 -1.26 -13.58 16 7 C -0.12 -4.05 9.98 22.35 0.22 -3.83 16 8 C -0.19 -7.45 7.04 22.35 0.16 -7.29 16 9 C 0.12 4.92 5.94 22.49 0.13 5.05 16 10 O -0.32 -14.71 8.86 -93.33 -0.83 -15.54 16 11 C 0.21 10.46 2.19 29.85 0.07 10.52 16 12 H 0.03 1.58 5.39 -2.39 -0.01 1.57 16 13 C -0.54 -28.56 8.89 25.60 0.23 -28.34 16 14 H 0.07 3.55 7.81 -2.91 -0.02 3.52 16 15 C 0.03 1.34 5.29 84.66 0.45 1.79 16 16 N -0.91 -47.57 11.30 21.45 0.24 -47.32 16 17 Si 0.98 40.30 29.54 68.60 2.03 42.33 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 21 C -0.03 -1.25 6.17 71.98 0.44 -0.80 16 22 Cl -0.22 -9.42 25.60 -2.72 -0.07 -9.49 16 23 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 2.11 8.05 -2.39 -0.02 2.09 16 27 H 0.06 1.89 7.69 -2.38 -0.02 1.87 16 28 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.40 5.62 9.06 -74.06 -0.67 4.95 16 30 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.12 5.19 5.10 -2.91 -0.01 5.17 16 32 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 33 H 0.12 5.81 5.96 -2.39 -0.01 5.79 16 34 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -57.90 298.82 3.41 -54.49 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.45 Total: 22.02 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 2.85 Total: -32.90 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.24 Total: -47.32 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -2.09 Total: -29.11 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 17 Polarization: -9.42 SS G_CDS: -0.07 Total: -9.49 kcal Total: -57.90 3.41 -54.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234102473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.371 kcal (2) G-P(sol) polarization free energy of solvation -57.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds