Wall clock time and date at job start Mon Mar 30 2020 00:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86803 * 119.99602 * 2 1 4 4 H 1.48497 * 109.47022 * 270.00264 * 3 2 1 5 5 H 1.48503 * 109.47069 * 30.00192 * 3 2 1 6 6 H 1.48498 * 109.46792 * 150.00305 * 3 2 1 7 7 C 1.40153 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.40828 * 119.99673 * 359.97438 * 7 2 1 10 10 N 1.33695 * 119.93907 * 359.97385 * 9 7 2 11 11 C 1.31286 * 121.63319 * 180.02562 * 10 9 7 12 12 C 1.39056 * 121.33855 * 0.02562 * 11 10 9 13 13 C 1.38400 * 119.72177 * 359.97438 * 12 11 10 14 14 C 1.39669 * 118.47740 * 0.02562 * 13 12 11 15 15 C 1.47843 * 120.64755 * 180.27244 * 14 13 12 16 16 C 1.39788 * 120.50011 * 129.72138 * 15 14 13 17 17 N 1.31726 * 120.87889 * 179.97438 * 16 15 14 18 18 C 1.31758 * 122.05527 * 359.97438 * 17 16 15 19 19 C 1.39704 * 120.89429 * 359.97438 * 18 17 16 20 20 C 1.47748 * 120.48560 * 180.02562 * 19 18 17 21 21 O 1.21465 * 120.00055 * 179.97438 * 20 19 18 22 22 O 1.34706 * 120.00039 * 0.02562 * 20 19 18 23 23 C 1.39786 * 119.02276 * 359.78968 * 19 18 17 24 24 H 0.96999 * 120.00377 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.32892 * 179.97438 * 11 10 9 26 26 H 1.07994 * 120.13755 * 180.02562 * 12 11 10 27 27 H 1.07998 * 120.76353 * 180.02562 * 13 12 11 28 28 H 1.08000 * 119.56393 * 0.02562 * 16 15 14 29 29 H 1.07996 * 119.55152 * 179.97438 * 18 17 16 30 30 H 0.96699 * 117.00348 * 179.97438 * 22 20 19 31 31 H 1.08004 * 120.92529 * 180.25269 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5384 1.4403 0.7000 7 6 2.0078 -1.2137 -0.0005 8 1 3.0878 -1.2136 -0.0010 9 6 1.3037 -2.4333 -0.0005 10 7 -0.0333 -2.4319 0.0005 11 6 -0.7230 -3.5490 0.0010 12 6 -0.0924 -4.7884 0.0011 13 6 1.2900 -4.8548 0.0000 14 6 2.0142 -3.6605 -0.0006 15 6 3.4925 -3.6756 -0.0078 16 6 4.2053 -2.9108 -0.9357 17 7 5.5225 -2.9183 -0.9485 18 6 6.2260 -3.6374 -0.0977 19 6 5.5955 -4.4303 0.8643 20 6 6.3933 -5.2327 1.8144 21 8 5.8359 -5.9186 2.6476 22 8 7.7388 -5.2028 1.7572 23 6 4.1988 -4.4494 0.9181 24 1 -0.4851 0.8400 0.0004 25 1 -1.8021 -3.5045 0.0023 26 1 -0.6789 -5.6952 0.0011 27 1 1.7972 -5.8083 -0.0004 28 1 3.6690 -2.3052 -1.6512 29 1 7.3047 -3.6136 -0.1447 30 1 8.2177 -5.7441 2.3996 31 1 3.6797 -5.0481 1.6519 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241802988.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:52 Heat of formation + Delta-G solvation = -26.732561 kcal Electronic energy + Delta-G solvation = -19387.109035 eV Core-core repulsion = 16212.151486 eV Total energy + Delta-G solvation = -3174.957549 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45604 -39.28943 -38.03337 -36.08647 -33.88380 -32.96167 -31.96538 -30.49165 -28.86505 -26.06041 -24.82986 -23.59467 -21.74969 -21.39711 -20.45460 -18.06361 -17.74064 -17.16200 -16.30403 -16.02569 -15.60928 -15.31918 -14.74410 -14.38368 -14.19467 -13.35918 -13.28504 -12.86356 -12.74538 -12.31289 -12.20328 -11.81273 -11.60510 -11.33057 -11.31154 -11.14516 -10.78168 -10.53305 -10.17482 -9.63126 -9.56662 -9.23387 -8.87393 -8.24532 -7.79548 -7.57175 -6.63197 -4.75063 0.81699 1.52221 2.53663 2.69418 2.87080 2.99591 3.03044 3.04010 3.10019 3.79906 4.20351 4.54962 4.76620 5.07460 5.15761 5.38921 5.43823 5.65755 5.87347 5.93027 5.98150 6.20576 6.30249 6.39844 6.41503 6.59047 6.72467 6.87396 6.98495 7.12756 7.35531 7.52693 7.80479 7.88377 7.99809 8.26722 8.41157 8.67974 9.87300 10.06671 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.006650 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.436096 B = 4209.761833 C = 5382.484720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.069 3.931 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.419 4.419 8 H 0.090 0.910 9 C 0.270 3.730 10 N -0.479 5.479 11 C 0.139 3.861 12 C -0.318 4.318 13 C -0.025 4.025 14 C -0.247 4.247 15 C -0.027 4.027 16 C 0.139 3.861 17 N -0.492 5.492 18 C 0.126 3.874 19 C -0.186 4.186 20 C 0.536 3.464 21 O -0.517 6.517 22 O -0.513 6.513 23 C -0.029 4.029 24 H 0.277 0.723 25 H 0.122 0.878 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.169 0.831 29 H 0.161 0.839 30 H 0.411 0.589 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -4.233 0.414 9.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.159 4.159 3 Si 0.728 3.272 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.448 4.448 8 H 0.108 0.892 9 C 0.148 3.852 10 N -0.190 5.190 11 C -0.031 4.031 12 C -0.341 4.341 13 C -0.050 4.050 14 C -0.252 4.252 15 C -0.029 4.029 16 C -0.018 4.018 17 N -0.200 5.200 18 C -0.032 4.032 19 C -0.189 4.189 20 C 0.380 3.620 21 O -0.407 6.407 22 O -0.325 6.325 23 C -0.054 4.054 24 H 0.089 0.911 25 H 0.139 0.861 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.186 0.814 29 H 0.178 0.822 30 H 0.269 0.731 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.791 -2.658 -0.264 8.236 hybrid contribution 0.564 -1.106 1.200 1.727 sum 8.355 -3.764 0.936 9.211 Atomic orbital electron populations 1.70088 1.07334 1.28441 1.26266 1.26137 0.94940 1.01367 0.93451 0.86336 0.80647 0.80476 0.79726 1.18889 1.19830 1.18260 1.19778 0.94702 0.89406 1.40938 0.89189 1.18482 0.88071 0.90684 0.88007 1.68794 1.06852 1.26603 1.16781 1.22673 0.98989 0.88781 0.92620 1.21253 0.94470 0.98050 1.20355 1.20897 0.93912 0.95585 0.94577 1.19082 0.89413 0.94872 1.21856 1.19657 0.94698 0.94864 0.93723 1.23502 0.88801 0.94060 0.95393 1.67711 1.08612 1.19834 1.23838 1.22967 1.00254 0.90488 0.89526 1.19902 0.93727 1.04525 1.00769 1.20829 0.80321 0.78879 0.81983 1.90876 1.72331 1.40525 1.36942 1.84565 1.20272 1.67747 1.59869 1.21877 0.91218 0.96041 0.96266 0.91117 0.86070 0.88375 0.88396 0.81361 0.82222 0.73068 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.48 11.46 55.56 0.64 -16.85 16 2 C 0.07 1.64 5.50 -17.32 -0.10 1.54 16 3 Si 0.90 17.73 29.56 -169.99 -5.03 12.71 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.42 -10.31 7.97 -37.88 -0.30 -10.62 16 8 H 0.09 2.10 5.26 -52.49 -0.28 1.83 16 9 C 0.27 6.82 6.56 -84.71 -0.56 6.26 16 10 N -0.48 -12.36 7.85 -10.91 -0.09 -12.44 16 11 C 0.14 3.14 11.17 -17.48 -0.20 2.94 16 12 C -0.32 -6.66 10.10 -39.22 -0.40 -7.06 16 13 C -0.03 -0.53 9.69 -38.99 -0.38 -0.91 16 14 C -0.25 -5.55 5.55 -104.07 -0.58 -6.13 16 15 C -0.03 -0.53 5.02 -104.80 -0.53 -1.06 16 16 C 0.14 2.66 8.75 -17.02 -0.15 2.51 16 17 N -0.49 -8.77 10.33 -12.53 -0.13 -8.90 16 18 C 0.13 1.98 10.78 -17.04 -0.18 1.79 16 19 C -0.19 -3.04 5.88 -104.88 -0.62 -3.65 16 20 C 0.54 7.88 8.28 34.62 0.29 8.17 16 21 O -0.52 -8.95 17.20 -19.24 -0.33 -9.28 16 22 O -0.51 -5.41 12.70 -40.51 -0.51 -5.93 16 23 C -0.03 -0.53 9.25 -38.42 -0.36 -0.88 16 24 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 25 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 26 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 27 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.17 3.23 7.25 -52.49 -0.38 2.85 16 29 H 0.16 2.03 7.61 -52.49 -0.40 1.63 16 30 H 0.41 2.32 9.11 45.56 0.42 2.74 16 31 H 0.14 2.57 7.73 -52.48 -0.41 2.16 16 LS Contribution 284.34 15.07 4.29 4.29 Total: -1.00 -29.20 284.34 -6.66 -35.85 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -1.45 Total: 7.64 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -4.04 Total: -7.09 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.42 Total: -38.19 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.85 Total: -15.21 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.20 -6.66 -35.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241802988.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.121 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds