Wall clock time and date at job start Mon Mar 30 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86809 * 119.99290 * 2 1 4 4 H 1.48496 * 109.47455 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46701 * 119.99899 * 3 2 1 6 6 H 1.48493 * 109.47057 * 239.99412 * 3 2 1 7 7 C 1.40017 * 120.00576 * 179.71758 * 2 1 3 8 8 H 1.08004 * 119.99847 * 357.67876 * 7 2 1 9 9 C 1.41390 * 120.00037 * 177.67005 * 7 2 1 10 10 C 1.40762 * 119.76571 * 179.97438 * 9 7 2 11 11 C 1.38227 * 119.18853 * 179.71156 * 10 9 7 12 12 C 1.38759 * 118.68629 * 0.55305 * 11 10 9 13 13 C 1.39859 * 119.45938 * 359.72770 * 12 11 10 14 14 C 1.48263 * 119.60716 * 179.97438 * 13 12 11 15 15 C 1.39785 * 120.44233 * 184.70124 * 14 13 12 16 16 C 1.38333 * 118.38067 * 179.78087 * 15 14 13 17 17 C 1.39454 * 119.17817 * 0.49721 * 16 15 14 18 18 C 1.47998 * 119.59113 * 179.72373 * 17 16 15 19 19 O 1.21446 * 119.99730 * 0.02562 * 18 17 16 20 20 O 1.34695 * 120.00109 * 180.02562 * 18 17 16 21 21 N 1.32817 * 120.81762 * 359.74407 * 17 16 15 22 22 C 1.31328 * 121.77148 * 359.97438 * 21 17 16 23 23 N 1.32277 * 120.78786 * 359.97438 * 13 12 11 24 24 H 0.96999 * 119.99263 * 174.59929 * 1 2 3 25 25 H 1.08001 * 120.40353 * 0.02562 * 10 9 7 26 26 H 1.08001 * 120.65941 * 180.26211 * 11 10 9 27 27 H 1.08001 * 120.26796 * 179.70650 * 12 11 10 28 28 H 1.07994 * 120.81160 * 0.02562 * 15 14 13 29 29 H 1.08003 * 120.40897 * 180.24493 * 16 15 14 30 30 H 0.96703 * 116.99750 * 179.97438 * 20 18 17 31 31 H 1.07994 * 119.63390 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 1.2762 2.7466 0.0006 5 1 3.0950 1.6966 1.2126 6 1 3.0951 1.6966 -1.2124 7 6 2.0076 -1.2125 0.0060 8 1 1.4684 -2.1473 0.0485 9 6 3.4207 -1.2131 -0.0438 10 6 4.1196 -2.4349 -0.0370 11 6 5.5007 -2.4218 -0.0921 12 6 6.1538 -1.1984 -0.1407 13 6 5.4039 -0.0179 -0.1387 14 6 6.0983 1.2911 -0.1900 15 6 5.3731 2.4820 -0.0901 16 6 6.0647 3.6790 -0.1385 17 6 7.4503 3.6578 -0.2946 18 6 8.1987 4.9333 -0.3537 19 8 7.6060 5.9896 -0.2659 20 8 9.5371 4.9224 -0.5048 21 7 8.1067 2.5072 -0.3914 22 6 7.4858 1.3509 -0.3442 23 7 4.0825 -0.0552 -0.0915 24 1 -0.4849 -0.8364 -0.0791 25 1 3.5831 -3.3713 0.0056 26 1 6.0607 -3.3453 -0.0925 27 1 7.2323 -1.1582 -0.1795 28 1 4.2995 2.4678 0.0259 29 1 5.5376 4.6184 -0.0604 30 1 9.9821 5.7804 -0.5383 31 1 8.0539 0.4361 -0.4259 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242334495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:00 Heat of formation + Delta-G solvation = -30.925504 kcal Electronic energy + Delta-G solvation = -19261.988859 eV Core-core repulsion = 16086.849490 eV Total energy + Delta-G solvation = -3175.139369 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74207 -39.61125 -38.53265 -36.19958 -34.22972 -33.03364 -32.09574 -31.32036 -29.69289 -26.21103 -25.08400 -23.62974 -22.50167 -21.37596 -20.67283 -18.64941 -18.31784 -17.75608 -16.60732 -15.90647 -15.82394 -15.49333 -14.85506 -14.58846 -14.17520 -13.93073 -13.82385 -13.24252 -12.97766 -12.94035 -12.25257 -12.07240 -11.85700 -11.65480 -11.04160 -10.94642 -10.88546 -10.23240 -10.11412 -9.75883 -9.54881 -9.52550 -9.24631 -8.84012 -7.95020 -7.87212 -7.42906 -4.99023 0.31477 1.29614 2.03603 2.38731 2.69377 2.80460 3.34478 3.45230 3.79546 3.86904 4.18197 4.24071 4.46511 4.67417 4.93398 5.00604 5.10860 5.24227 5.31819 5.59105 5.75313 5.99890 6.04854 6.14310 6.23960 6.28610 6.40002 6.53520 6.69043 7.00915 7.16587 7.27854 7.42157 7.59231 7.85904 7.92412 8.05961 8.41567 9.14804 9.82114 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.005970 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.297683 B = 4688.861926 C = 5867.234377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.041 3.959 3 Si 1.146 2.854 4 H -0.326 1.326 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.251 3.749 10 C -0.246 4.246 11 C -0.047 4.047 12 C -0.286 4.286 13 C 0.195 3.805 14 C -0.034 4.034 15 C -0.072 4.072 16 C -0.102 4.102 17 C 0.068 3.932 18 C 0.548 3.452 19 O -0.511 6.511 20 O -0.493 6.493 21 N -0.434 5.434 22 C 0.108 3.892 23 N -0.564 5.564 24 H 0.286 0.714 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.410 0.590 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.142 4.154 -0.558 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.181 4.181 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.499 4.499 8 H 0.104 0.896 9 C 0.128 3.872 10 C -0.268 4.268 11 C -0.070 4.070 12 C -0.310 4.310 13 C 0.055 3.945 14 C -0.037 4.037 15 C -0.098 4.098 16 C -0.123 4.123 17 C -0.067 4.067 18 C 0.390 3.610 19 O -0.399 6.399 20 O -0.303 6.303 21 N -0.145 5.145 22 C -0.054 4.054 23 N -0.284 5.284 24 H 0.097 0.903 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.169 0.831 29 H 0.170 0.830 30 H 0.267 0.733 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.851 6.376 -0.546 13.469 hybrid contribution -0.137 -2.319 0.024 2.324 sum 11.714 4.057 -0.522 12.408 Atomic orbital electron populations 1.70642 1.08161 1.33027 1.29947 1.27825 0.95357 1.06230 0.88718 0.82257 0.70267 0.70156 0.78987 1.25927 1.21418 1.20883 1.20833 0.90187 0.96516 1.42345 0.89644 1.18523 0.93837 0.86530 0.88356 1.21765 0.93977 0.98246 1.12832 1.20936 0.94301 0.96574 0.95209 1.21098 0.98723 0.92255 1.18914 1.19041 0.89757 0.90095 0.95562 1.20169 0.94203 0.93537 0.95816 1.22336 1.02301 0.90685 0.94461 1.22067 0.93064 1.00197 0.96947 1.19877 0.90535 0.90489 1.05849 1.20503 0.80492 0.88125 0.71831 1.90899 1.70086 1.32250 1.46667 1.84706 1.21064 1.40286 1.84250 1.67602 1.39785 0.97545 1.09568 1.22981 0.90863 0.95570 0.95951 1.66266 1.07468 1.28766 1.25854 0.90303 0.87285 0.87214 0.87005 0.83058 0.83041 0.73253 0.81074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.88 13.65 55.55 0.76 -20.12 16 2 C 0.04 1.06 5.52 -17.35 -0.10 0.96 16 3 Si 1.15 26.90 21.98 -169.99 -3.74 23.17 16 4 H -0.33 -7.56 7.11 56.52 0.40 -7.16 16 5 H -0.28 -6.55 6.63 56.52 0.37 -6.17 16 6 H -0.28 -6.44 6.35 56.52 0.36 -6.08 16 7 C -0.47 -12.06 9.58 -37.72 -0.36 -12.43 16 8 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 9 C 0.25 6.15 6.43 -85.01 -0.55 5.60 16 10 C -0.25 -5.28 9.83 -38.63 -0.38 -5.66 16 11 C -0.05 -0.87 10.15 -39.39 -0.40 -1.27 16 12 C -0.29 -5.30 9.48 -38.78 -0.37 -5.66 16 13 C 0.20 4.08 6.73 -82.95 -0.56 3.52 16 14 C -0.03 -0.63 5.90 -104.64 -0.62 -1.25 16 15 C -0.07 -1.33 9.39 -38.97 -0.37 -1.69 16 16 C -0.10 -1.63 9.62 -39.09 -0.38 -2.00 16 17 C 0.07 1.07 6.75 -82.99 -0.56 0.51 16 18 C 0.55 7.65 8.32 34.73 0.29 7.94 16 19 O -0.51 -7.87 17.10 -19.22 -0.33 -8.20 16 20 O -0.49 -5.42 13.24 -40.48 -0.54 -5.96 16 21 N -0.43 -6.90 10.10 -9.54 -0.10 -7.00 16 22 C 0.11 1.70 10.58 -17.21 -0.18 1.52 16 23 N -0.56 -13.47 4.19 -7.68 -0.03 -13.50 16 24 H 0.29 7.11 8.73 -40.82 -0.36 6.75 16 25 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 26 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 27 H 0.11 1.67 6.22 -52.49 -0.33 1.34 16 28 H 0.15 3.00 2.22 -52.49 -0.12 2.88 16 29 H 0.15 2.10 7.63 -52.48 -0.40 1.70 16 30 H 0.41 2.23 9.11 45.56 0.42 2.64 16 31 H 0.17 2.21 6.21 -52.49 -0.33 1.88 16 LS Contribution 272.88 15.07 4.11 4.11 Total: -1.00 -29.25 272.88 -5.62 -34.87 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -1.24 Total: 2.55 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -4.52 Total: -9.93 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.63 Total: -40.62 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.86 Total: -14.16 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -3.74 Total: 23.17 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.25 -5.62 -34.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242334495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.948 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds