Wall clock time and date at job start Mon Mar 30 2020 00:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86809 * 119.99290 * 2 1 4 4 H 1.48496 * 109.47455 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46701 * 119.99899 * 3 2 1 6 6 H 1.48493 * 109.47057 * 239.99412 * 3 2 1 7 7 C 1.40017 * 120.00576 * 179.71758 * 2 1 3 8 8 H 1.08004 * 119.99847 * 357.67876 * 7 2 1 9 9 C 1.41390 * 120.00037 * 177.67005 * 7 2 1 10 10 C 1.40762 * 119.76571 * 179.97438 * 9 7 2 11 11 C 1.38227 * 119.18853 * 179.71156 * 10 9 7 12 12 C 1.38759 * 118.68629 * 0.55305 * 11 10 9 13 13 C 1.39859 * 119.45938 * 359.72770 * 12 11 10 14 14 C 1.48263 * 119.60716 * 179.97438 * 13 12 11 15 15 C 1.39785 * 120.44233 * 184.70124 * 14 13 12 16 16 C 1.38333 * 118.38067 * 179.78087 * 15 14 13 17 17 C 1.39454 * 119.17817 * 0.49721 * 16 15 14 18 18 C 1.47998 * 119.59113 * 179.72373 * 17 16 15 19 19 O 1.21446 * 119.99730 * 0.02562 * 18 17 16 20 20 O 1.34695 * 120.00109 * 180.02562 * 18 17 16 21 21 N 1.32817 * 120.81762 * 359.74407 * 17 16 15 22 22 C 1.31328 * 121.77148 * 359.97438 * 21 17 16 23 23 N 1.32277 * 120.78786 * 359.97438 * 13 12 11 24 24 H 0.96999 * 119.99263 * 174.59929 * 1 2 3 25 25 H 1.08001 * 120.40353 * 0.02562 * 10 9 7 26 26 H 1.08001 * 120.65941 * 180.26211 * 11 10 9 27 27 H 1.08001 * 120.26796 * 179.70650 * 12 11 10 28 28 H 1.07994 * 120.81160 * 0.02562 * 15 14 13 29 29 H 1.08003 * 120.40897 * 180.24493 * 16 15 14 30 30 H 0.96703 * 116.99750 * 179.97438 * 20 18 17 31 31 H 1.07994 * 119.63390 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 1.2762 2.7466 0.0006 5 1 3.0950 1.6966 1.2126 6 1 3.0951 1.6966 -1.2124 7 6 2.0076 -1.2125 0.0060 8 1 1.4684 -2.1473 0.0485 9 6 3.4207 -1.2131 -0.0438 10 6 4.1196 -2.4349 -0.0370 11 6 5.5007 -2.4218 -0.0921 12 6 6.1538 -1.1984 -0.1407 13 6 5.4039 -0.0179 -0.1387 14 6 6.0983 1.2911 -0.1900 15 6 5.3731 2.4820 -0.0901 16 6 6.0647 3.6790 -0.1385 17 6 7.4503 3.6578 -0.2946 18 6 8.1987 4.9333 -0.3537 19 8 7.6060 5.9896 -0.2659 20 8 9.5371 4.9224 -0.5048 21 7 8.1067 2.5072 -0.3914 22 6 7.4858 1.3509 -0.3442 23 7 4.0825 -0.0552 -0.0915 24 1 -0.4849 -0.8364 -0.0791 25 1 3.5831 -3.3713 0.0056 26 1 6.0607 -3.3453 -0.0925 27 1 7.2323 -1.1582 -0.1795 28 1 4.2995 2.4678 0.0259 29 1 5.5376 4.6184 -0.0604 30 1 9.9821 5.7804 -0.5383 31 1 8.0539 0.4361 -0.4259 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242334495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:59 Heat of formation + Delta-G solvation = -50.991272 kcal Electronic energy + Delta-G solvation = -19262.858976 eV Core-core repulsion = 16086.849490 eV Total energy + Delta-G solvation = -3176.009486 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.95020 -40.90379 -40.02497 -37.19186 -35.99898 -34.48905 -33.49425 -32.91572 -31.22447 -27.82089 -26.50728 -24.97993 -23.86046 -22.90058 -22.14592 -20.42169 -19.52068 -18.91385 -17.97452 -17.32238 -16.98247 -16.89610 -16.46464 -16.11571 -15.53082 -15.32732 -15.26246 -14.68479 -14.50063 -14.41335 -13.90639 -13.73585 -13.25575 -12.77850 -12.62869 -12.53063 -12.05517 -11.92671 -11.68033 -11.64136 -11.05973 -10.84239 -10.76582 -10.47278 -9.73860 -9.47162 -9.29815 -6.86871 -0.98480 0.01554 0.59282 0.73606 1.37487 1.44020 1.61137 1.78372 1.93800 2.32529 2.48478 2.74577 3.04052 3.27058 3.53757 3.67013 3.71299 3.82795 4.05262 4.26620 4.45380 4.59544 4.62101 4.64347 4.76886 4.92264 5.09426 5.28526 5.34427 5.39041 5.43005 5.58397 5.79342 5.96743 6.30749 6.46429 6.58821 6.94347 7.43395 7.91737 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.005970 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.297683 B = 4688.861926 C = 5867.234377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.013 3.987 3 Si 1.178 2.822 4 H -0.330 1.330 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.511 4.511 8 H 0.069 0.931 9 C 0.237 3.763 10 C -0.262 4.262 11 C -0.037 4.037 12 C -0.258 4.258 13 C 0.170 3.830 14 C -0.057 4.057 15 C -0.090 4.090 16 C -0.101 4.101 17 C 0.070 3.930 18 C 0.556 3.444 19 O -0.528 6.528 20 O -0.486 6.486 21 N -0.435 5.435 22 C 0.126 3.874 23 N -0.586 5.586 24 H 0.282 0.718 25 H 0.117 0.883 26 H 0.158 0.842 27 H 0.161 0.839 28 H 0.132 0.868 29 H 0.166 0.834 30 H 0.435 0.565 31 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.631 4.156 -0.777 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.203 4.203 3 Si 1.013 2.987 4 H -0.264 1.264 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.544 4.544 8 H 0.088 0.912 9 C 0.112 3.888 10 C -0.284 4.284 11 C -0.060 4.060 12 C -0.280 4.280 13 C 0.033 3.967 14 C -0.060 4.060 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.066 4.066 18 C 0.399 3.601 19 O -0.418 6.418 20 O -0.299 6.299 21 N -0.146 5.146 22 C -0.036 4.036 23 N -0.306 5.306 24 H 0.093 0.907 25 H 0.135 0.865 26 H 0.176 0.824 27 H 0.179 0.821 28 H 0.149 0.851 29 H 0.184 0.816 30 H 0.298 0.702 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 16.401 6.394 -0.768 17.620 hybrid contribution -1.102 -2.343 0.073 2.590 sum 15.300 4.051 -0.695 15.842 Atomic orbital electron populations 1.70662 1.08511 1.32789 1.33574 1.28448 0.95627 1.07872 0.88364 0.81846 0.69363 0.68523 0.78919 1.26396 1.21502 1.20904 1.20777 0.91417 0.95870 1.46299 0.91233 1.18692 0.93632 0.88096 0.88420 1.21981 0.95725 0.97472 1.13230 1.21484 0.93149 0.98749 0.92628 1.21749 1.01128 0.91070 1.14052 1.19621 0.89062 0.92390 0.95657 1.20206 0.95424 0.92345 0.97995 1.22261 1.01651 0.92021 0.95606 1.22152 0.93492 0.99947 0.96517 1.20187 0.90616 0.91371 1.04399 1.20149 0.81314 0.87060 0.71569 1.90907 1.70728 1.32603 1.47514 1.84637 1.19381 1.42506 1.83342 1.67724 1.39512 0.97620 1.09705 1.23378 0.89570 0.96692 0.93954 1.66119 1.09405 1.28839 1.26261 0.90702 0.86531 0.82428 0.82112 0.85096 0.81609 0.70236 0.77724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.34 13.65 21.83 0.30 -46.04 16 2 C 0.01 0.73 5.52 85.29 0.47 1.20 16 3 Si 1.18 57.14 21.98 68.60 1.51 58.65 16 4 H -0.33 -15.79 7.11 99.48 0.71 -15.08 16 5 H -0.29 -13.54 6.63 99.48 0.66 -12.88 16 6 H -0.28 -13.25 6.35 99.48 0.63 -12.62 16 7 C -0.51 -27.80 9.58 23.48 0.22 -27.58 16 8 H 0.07 3.83 8.06 -2.91 -0.02 3.80 16 9 C 0.24 11.75 6.43 40.29 0.26 12.01 16 10 C -0.26 -10.89 9.83 22.88 0.23 -10.66 16 11 C -0.04 -1.20 10.15 22.39 0.23 -0.97 16 12 C -0.26 -8.24 9.48 22.79 0.22 -8.02 16 13 C 0.17 6.71 6.73 42.14 0.28 6.99 16 14 C -0.06 -1.95 5.90 -19.88 -0.12 -2.07 16 15 C -0.09 -3.20 9.39 22.67 0.21 -2.99 16 16 C -0.10 -3.04 9.62 22.59 0.22 -2.82 16 17 C 0.07 1.98 6.75 41.88 0.28 2.26 16 18 C 0.56 13.78 8.32 70.41 0.59 14.37 16 19 O -0.53 -14.91 17.10 20.01 0.34 -14.57 16 20 O -0.49 -8.76 13.24 -56.05 -0.74 -9.51 16 21 N -0.44 -12.10 10.10 -184.10 -1.86 -13.96 16 22 C 0.13 3.39 10.58 85.13 0.90 4.29 16 23 N -0.59 -27.88 4.19 -178.22 -0.75 -28.63 16 24 H 0.28 15.13 8.73 -92.71 -0.81 14.32 16 25 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 26 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.16 3.57 6.22 -2.91 -0.02 3.55 16 28 H 0.13 5.23 2.22 -2.91 -0.01 5.22 16 29 H 0.17 4.38 7.63 -2.91 -0.02 4.36 16 30 H 0.44 2.95 9.11 -74.06 -0.67 2.28 16 31 H 0.21 3.94 6.21 -2.91 -0.02 3.92 16 Total: -1.00 -66.08 272.88 3.17 -62.92 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 0.38 Total: 5.11 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 3.99 Total: -13.98 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -2.31 Total: -88.62 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.40 Total: -24.08 kcal Atomic # 14 Polarization: 57.14 SS G_CDS: 1.51 Total: 58.65 kcal Total: -66.08 3.17 -62.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242334495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.925 kcal (2) G-P(sol) polarization free energy of solvation -66.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds