Wall clock time and date at job start Mon Mar 30 2020 00:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86807 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47442 * 85.17068 * 3 2 1 5 5 H 1.48503 * 109.47026 * 205.17730 * 3 2 1 6 6 H 1.48504 * 109.46741 * 325.17226 * 3 2 1 7 7 C 1.40121 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99794 * 197.19178 * 7 2 1 9 9 C 1.40983 * 120.00314 * 17.19025 * 7 2 1 10 10 C 1.41315 * 120.55623 * 204.57800 * 9 7 2 11 11 C 1.36607 * 118.40915 * 179.74776 * 10 9 7 12 12 C 1.39935 * 119.46415 * 0.52466 * 11 10 9 13 13 C 1.47861 * 119.44913 * 179.71713 * 12 11 10 14 14 C 1.40034 * 120.46264 * 184.74415 * 13 12 11 15 15 C 1.38220 * 118.36786 * 179.72970 * 14 13 12 16 16 C 1.39545 * 119.20399 * 0.55962 * 15 14 13 17 17 C 1.47937 * 119.56896 * 179.67632 * 16 15 14 18 18 O 1.21450 * 120.00171 * 0.02562 * 17 16 15 19 19 O 1.34708 * 119.99482 * 180.02562 * 17 16 15 20 20 N 1.32870 * 120.85504 * 359.70187 * 16 15 14 21 21 C 1.31282 * 121.79292 * 359.97438 * 20 16 15 22 22 N 1.33058 * 121.09603 * 359.73400 * 12 11 10 23 23 C 1.31207 * 121.73397 * 359.97438 * 22 12 11 24 24 H 0.97001 * 120.00344 * 0.02562 * 1 2 3 25 25 H 1.08007 * 120.79504 * 359.96797 * 10 9 7 26 26 H 1.07995 * 120.26523 * 180.21051 * 11 10 9 27 27 H 1.07997 * 120.81034 * 359.97226 * 14 13 12 28 28 H 1.08002 * 120.39978 * 180.23656 * 15 14 13 29 29 H 0.96703 * 116.99745 * 179.97438 * 19 17 16 30 30 H 1.08000 * 119.65058 * 179.97438 * 21 20 16 31 31 H 1.08006 * 119.79882 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3867 2.1055 1.3950 5 1 3.5861 1.4129 -0.5956 6 1 1.4933 2.6211 -0.7996 7 6 2.0079 -1.2135 0.0005 8 1 3.0517 -1.2342 0.2770 9 6 1.3503 -2.4074 -0.3598 10 6 1.8227 -3.6559 0.1040 11 6 1.1489 -4.7846 -0.2678 12 6 0.0279 -4.6749 -1.0981 13 6 -0.6974 -5.8973 -1.5055 14 6 -1.7604 -5.8226 -2.4140 15 6 -2.4044 -6.9929 -2.7690 16 6 -1.9848 -8.1988 -2.2058 17 6 -2.6730 -9.4553 -2.5746 18 8 -3.5964 -9.4331 -3.3632 19 8 -2.2754 -10.6241 -2.0357 20 7 -0.9756 -8.2329 -1.3423 21 6 -0.3344 -7.1446 -0.9844 22 7 -0.3960 -3.4889 -1.5274 23 6 0.2134 -2.3760 -1.1935 24 1 -0.4851 0.8400 -0.0004 25 1 2.6934 -3.7160 0.7402 26 1 1.4818 -5.7540 0.0722 27 1 -2.0669 -4.8742 -2.8299 28 1 -3.2259 -6.9738 -3.4699 29 1 -2.7557 -11.4184 -2.3068 30 1 0.4809 -7.2123 -0.2794 31 1 -0.1578 -1.4301 -1.5596 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242334696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:35 Heat of formation + Delta-G solvation = -36.910996 kcal Electronic energy + Delta-G solvation = -18626.188065 eV Core-core repulsion = 15450.789146 eV Total energy + Delta-G solvation = -3175.398919 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43198 -39.30118 -38.24479 -36.01554 -34.59509 -32.52899 -31.74498 -31.23896 -29.37175 -26.44191 -24.36694 -23.54568 -21.94476 -21.59401 -20.58577 -18.14730 -17.89010 -17.39239 -16.22074 -15.98370 -15.61868 -15.57932 -14.73470 -14.21987 -13.95142 -13.58563 -13.56324 -13.13368 -12.76342 -12.59837 -12.32878 -11.83465 -11.54183 -11.51092 -11.47687 -11.17506 -11.01313 -10.74606 -10.43902 -9.85992 -9.54046 -9.28685 -9.08777 -8.68201 -8.19799 -7.55535 -7.32153 -4.79785 0.63611 1.61267 2.20224 2.68165 2.73891 2.82117 2.87098 3.03375 3.05694 3.55840 4.05637 4.39914 4.54326 5.10174 5.21509 5.35354 5.39804 5.43375 5.59213 5.80415 6.05660 6.21762 6.34592 6.40267 6.46587 6.62153 6.65441 6.76458 6.88788 6.96852 7.30932 7.47450 7.69577 7.84111 7.92549 8.20628 8.25948 8.34981 9.39619 9.60888 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.056590 B = 0.003462 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.668392 B = 8084.706123 C = 8495.168064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.069 3.931 3 Si 0.920 3.080 4 H -0.265 1.265 5 H -0.255 1.255 6 H -0.269 1.269 7 C -0.415 4.415 8 H 0.091 0.909 9 C 0.070 3.930 10 C -0.206 4.206 11 C -0.095 4.095 12 C -0.036 4.036 13 C 0.020 3.980 14 C -0.096 4.096 15 C -0.091 4.091 16 C 0.027 3.973 17 C 0.549 3.451 18 O -0.522 6.522 19 O -0.497 6.497 20 N -0.427 5.427 21 C 0.069 3.931 22 N -0.449 5.449 23 C 0.049 3.951 24 H 0.294 0.706 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.150 0.850 28 H 0.141 0.859 29 H 0.406 0.594 30 H 0.162 0.838 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 -5.967 -1.475 6.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.154 4.154 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.179 1.179 6 H -0.194 1.194 7 C -0.443 4.443 8 H 0.109 0.891 9 C 0.065 3.935 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.165 4.165 13 C 0.017 3.983 14 C -0.121 4.121 15 C -0.112 4.112 16 C -0.108 4.108 17 C 0.393 3.607 18 O -0.412 6.412 19 O -0.306 6.306 20 N -0.137 5.137 21 C -0.094 4.094 22 N -0.157 5.157 23 C -0.122 4.122 24 H 0.105 0.895 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.167 0.833 28 H 0.159 0.841 29 H 0.263 0.737 30 H 0.179 0.821 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.146 -6.356 -1.760 6.694 hybrid contribution 0.503 1.050 0.202 1.181 sum -0.643 -5.306 -1.558 5.567 Atomic orbital electron populations 1.69707 1.08003 1.30989 1.29597 1.26217 0.94967 1.02399 0.91848 0.86067 0.80747 0.79238 0.79640 1.18985 1.17874 1.19383 1.19854 0.98253 0.90825 1.35349 0.89144 1.18709 0.92621 0.92914 0.89296 1.21009 1.03473 0.92599 1.05926 1.21217 0.95383 0.97986 0.96954 1.18533 0.99349 0.90094 1.08481 1.20008 0.92634 0.93511 0.92185 1.21661 0.94978 0.98451 0.97042 1.21910 0.99430 0.91390 0.98424 1.19613 0.98741 0.90396 1.02047 1.20611 0.79951 0.83482 0.76658 1.90862 1.28950 1.87322 1.34019 1.84728 1.61302 1.17409 1.67142 1.67435 1.04804 1.31866 1.09581 1.22825 0.99821 0.86585 1.00196 1.67050 1.29499 0.98095 1.21021 1.22971 0.96026 0.94690 0.98519 0.89476 0.87380 0.87603 0.83257 0.84096 0.73700 0.82101 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.95 10.95 55.56 0.61 -16.34 16 2 C 0.07 1.47 5.16 -17.32 -0.09 1.38 16 3 Si 0.92 15.75 29.59 -169.99 -5.03 10.72 16 4 H -0.27 -4.51 7.11 56.52 0.40 -4.10 16 5 H -0.26 -4.35 7.11 56.52 0.40 -3.95 16 6 H -0.27 -4.54 7.11 56.52 0.40 -4.13 16 7 C -0.41 -9.39 9.06 -37.84 -0.34 -9.73 16 8 H 0.09 1.92 7.91 -52.48 -0.41 1.50 16 9 C 0.07 1.65 5.58 -106.64 -0.60 1.06 16 10 C -0.21 -4.46 9.88 -39.00 -0.39 -4.84 16 11 C -0.10 -1.94 9.38 -39.54 -0.37 -2.31 16 12 C -0.04 -0.77 6.73 -82.76 -0.56 -1.32 16 13 C 0.02 0.37 5.90 -104.64 -0.62 -0.24 16 14 C -0.10 -1.70 9.68 -38.92 -0.38 -2.08 16 15 C -0.09 -1.49 9.61 -39.10 -0.38 -1.87 16 16 C 0.03 0.46 6.75 -82.96 -0.56 -0.10 16 17 C 0.55 8.50 8.32 34.70 0.29 8.79 16 18 O -0.52 -8.74 17.09 -19.23 -0.33 -9.07 16 19 O -0.50 -6.26 13.24 -40.52 -0.54 -6.80 16 20 N -0.43 -7.52 10.09 -9.47 -0.10 -7.62 16 21 C 0.07 1.21 10.58 -17.14 -0.18 1.02 16 22 N -0.45 -10.50 9.46 -9.11 -0.09 -10.58 16 23 C 0.05 1.17 9.89 -16.77 -0.17 1.01 16 24 H 0.29 5.84 8.29 -40.82 -0.34 5.50 16 25 H 0.11 2.11 8.06 -52.48 -0.42 1.68 16 26 H 0.11 1.79 6.20 -52.49 -0.33 1.46 16 27 H 0.15 2.62 7.61 -52.49 -0.40 2.22 16 28 H 0.14 2.04 7.63 -52.49 -0.40 1.64 16 29 H 0.41 2.82 9.11 45.56 0.42 3.24 16 30 H 0.16 2.44 6.19 -52.49 -0.33 2.12 16 31 H 0.15 3.71 6.17 -52.48 -0.32 3.39 16 LS Contribution 285.44 15.07 4.30 4.30 Total: -1.00 -27.24 285.44 -6.83 -34.07 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -1.33 Total: 10.56 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -4.33 Total: -9.24 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.43 Total: -34.54 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.86 Total: -15.87 kcal Atomic # 14 Polarization: 15.75 SS G_CDS: -5.03 Total: 10.72 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.24 -6.83 -34.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242334696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.843 kcal (2) G-P(sol) polarization free energy of solvation -27.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds