Wall clock time and date at job start Mon Mar 30 2020 00:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86807 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47442 * 85.17068 * 3 2 1 5 5 H 1.48503 * 109.47026 * 205.17730 * 3 2 1 6 6 H 1.48504 * 109.46741 * 325.17226 * 3 2 1 7 7 C 1.40121 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99794 * 197.19178 * 7 2 1 9 9 C 1.40983 * 120.00314 * 17.19025 * 7 2 1 10 10 C 1.41315 * 120.55623 * 204.57800 * 9 7 2 11 11 C 1.36607 * 118.40915 * 179.74776 * 10 9 7 12 12 C 1.39935 * 119.46415 * 0.52466 * 11 10 9 13 13 C 1.47861 * 119.44913 * 179.71713 * 12 11 10 14 14 C 1.40034 * 120.46264 * 184.74415 * 13 12 11 15 15 C 1.38220 * 118.36786 * 179.72970 * 14 13 12 16 16 C 1.39545 * 119.20399 * 0.55962 * 15 14 13 17 17 C 1.47937 * 119.56896 * 179.67632 * 16 15 14 18 18 O 1.21450 * 120.00171 * 0.02562 * 17 16 15 19 19 O 1.34708 * 119.99482 * 180.02562 * 17 16 15 20 20 N 1.32870 * 120.85504 * 359.70187 * 16 15 14 21 21 C 1.31282 * 121.79292 * 359.97438 * 20 16 15 22 22 N 1.33058 * 121.09603 * 359.73400 * 12 11 10 23 23 C 1.31207 * 121.73397 * 359.97438 * 22 12 11 24 24 H 0.97001 * 120.00344 * 0.02562 * 1 2 3 25 25 H 1.08007 * 120.79504 * 359.96797 * 10 9 7 26 26 H 1.07995 * 120.26523 * 180.21051 * 11 10 9 27 27 H 1.07997 * 120.81034 * 359.97226 * 14 13 12 28 28 H 1.08002 * 120.39978 * 180.23656 * 15 14 13 29 29 H 0.96703 * 116.99745 * 179.97438 * 19 17 16 30 30 H 1.08000 * 119.65058 * 179.97438 * 21 20 16 31 31 H 1.08006 * 119.79882 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3867 2.1055 1.3950 5 1 3.5861 1.4129 -0.5956 6 1 1.4933 2.6211 -0.7996 7 6 2.0079 -1.2135 0.0005 8 1 3.0517 -1.2342 0.2770 9 6 1.3503 -2.4074 -0.3598 10 6 1.8227 -3.6559 0.1040 11 6 1.1489 -4.7846 -0.2678 12 6 0.0279 -4.6749 -1.0981 13 6 -0.6974 -5.8973 -1.5055 14 6 -1.7604 -5.8226 -2.4140 15 6 -2.4044 -6.9929 -2.7690 16 6 -1.9848 -8.1988 -2.2058 17 6 -2.6730 -9.4553 -2.5746 18 8 -3.5964 -9.4331 -3.3632 19 8 -2.2754 -10.6241 -2.0357 20 7 -0.9756 -8.2329 -1.3423 21 6 -0.3344 -7.1446 -0.9844 22 7 -0.3960 -3.4889 -1.5274 23 6 0.2134 -2.3760 -1.1935 24 1 -0.4851 0.8400 -0.0004 25 1 2.6934 -3.7160 0.7402 26 1 1.4818 -5.7540 0.0722 27 1 -2.0669 -4.8742 -2.8299 28 1 -3.2259 -6.9738 -3.4699 29 1 -2.7557 -11.4184 -2.3068 30 1 0.4809 -7.2123 -0.2794 31 1 -0.1578 -1.4301 -1.5596 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242334696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:34 Heat of formation + Delta-G solvation = -53.525990 kcal Electronic energy + Delta-G solvation = -18626.908545 eV Core-core repulsion = 15450.789146 eV Total energy + Delta-G solvation = -3176.119400 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73793 -40.68970 -39.79440 -37.14625 -36.19378 -34.01124 -33.21460 -32.85402 -30.93389 -27.98079 -25.84397 -24.99495 -23.36310 -23.20148 -22.06091 -19.54003 -19.34014 -18.64782 -17.75444 -17.46389 -17.06483 -16.81918 -16.18448 -15.78152 -15.34999 -15.03337 -15.00271 -14.49747 -14.17945 -14.12794 -13.79558 -13.44401 -13.08653 -13.00137 -12.67913 -12.60287 -12.51030 -12.00787 -11.90243 -11.39033 -10.99096 -10.67834 -10.53436 -10.35774 -9.91045 -9.19016 -8.89402 -6.49777 -0.74955 0.23260 0.70914 1.02212 1.35340 1.41399 1.55790 1.62528 1.92019 2.13818 2.55989 2.89496 3.24780 3.60731 3.69447 3.88418 3.96470 4.09545 4.21630 4.34994 4.61969 4.71698 4.75078 4.91574 5.04662 5.08571 5.26700 5.28872 5.44445 5.46612 5.69080 5.82759 6.02052 6.25859 6.60711 6.61765 6.68396 7.01766 7.67002 8.07180 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.056590 B = 0.003462 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.668392 B = 8084.706123 C = 8495.168064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.253 1.253 6 H -0.265 1.265 7 C -0.447 4.447 8 H 0.097 0.903 9 C 0.044 3.956 10 C -0.214 4.214 11 C -0.097 4.097 12 C -0.041 4.041 13 C -0.004 4.004 14 C -0.094 4.094 15 C -0.087 4.087 16 C 0.028 3.972 17 C 0.556 3.444 18 O -0.535 6.535 19 O -0.491 6.491 20 N -0.434 5.434 21 C 0.081 3.919 22 N -0.465 5.465 23 C 0.019 3.981 24 H 0.300 0.700 25 H 0.127 0.873 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.161 0.839 29 H 0.432 0.568 30 H 0.185 0.815 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -7.659 -1.349 7.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.176 1.176 6 H -0.189 1.189 7 C -0.475 4.475 8 H 0.115 0.885 9 C 0.039 3.961 10 C -0.239 4.239 11 C -0.117 4.117 12 C -0.172 4.172 13 C -0.007 4.007 14 C -0.120 4.120 15 C -0.107 4.107 16 C -0.107 4.107 17 C 0.400 3.600 18 O -0.426 6.426 19 O -0.303 6.303 20 N -0.145 5.145 21 C -0.082 4.082 22 N -0.173 5.173 23 C -0.150 4.150 24 H 0.112 0.888 25 H 0.144 0.856 26 H 0.162 0.838 27 H 0.163 0.837 28 H 0.178 0.822 29 H 0.294 0.706 30 H 0.202 0.798 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.889 -8.065 -1.630 8.276 hybrid contribution 0.269 1.205 0.097 1.238 sum -0.621 -6.859 -1.534 7.056 Atomic orbital electron populations 1.69754 1.09474 1.32172 1.30606 1.27044 0.95516 1.05281 0.90721 0.85014 0.79246 0.74876 0.79707 1.18398 1.17640 1.18944 1.20108 0.98758 0.91563 1.37057 0.88497 1.18994 0.92953 0.94344 0.89844 1.21323 1.04133 0.92419 1.05997 1.21566 0.94598 0.99337 0.96192 1.19027 0.99790 0.90267 1.08108 1.20027 0.93610 0.93292 0.93733 1.21727 0.94679 0.98977 0.96596 1.22058 0.99598 0.90659 0.98434 1.20044 0.98115 0.91509 1.00996 1.20277 0.79447 0.83844 0.76407 1.90870 1.29452 1.87647 1.34612 1.84660 1.61457 1.17718 1.66510 1.67542 1.05214 1.31694 1.10041 1.23117 0.99753 0.85685 0.99595 1.67003 1.30029 0.98688 1.21584 1.22807 0.97411 0.94555 1.00181 0.88814 0.85552 0.83814 0.83683 0.82175 0.70622 0.79830 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.91 10.95 21.86 0.24 -36.67 16 2 C 0.03 1.49 5.16 85.32 0.44 1.93 16 3 Si 0.99 32.52 29.59 68.60 2.03 34.55 16 4 H -0.26 -8.20 7.11 99.48 0.71 -7.50 16 5 H -0.25 -8.10 7.11 99.48 0.71 -7.39 16 6 H -0.27 -8.40 7.11 99.48 0.71 -7.69 16 7 C -0.45 -20.84 9.06 23.40 0.21 -20.63 16 8 H 0.10 4.19 7.91 -2.91 -0.02 4.17 16 9 C 0.04 2.14 5.58 -21.17 -0.12 2.02 16 10 C -0.21 -9.27 9.88 22.65 0.22 -9.04 16 11 C -0.10 -3.85 9.38 22.30 0.21 -3.64 16 12 C -0.04 -1.75 6.73 41.92 0.28 -1.47 16 13 C 0.00 -0.13 5.90 -19.88 -0.12 -0.25 16 14 C -0.09 -3.25 9.68 22.70 0.22 -3.03 16 15 C -0.09 -2.68 9.61 22.58 0.22 -2.46 16 16 C 0.03 0.89 6.75 41.87 0.28 1.17 16 17 C 0.56 15.52 8.32 70.39 0.59 16.11 16 18 O -0.54 -16.39 17.09 20.00 0.34 -16.05 16 19 O -0.49 -10.62 13.24 -56.18 -0.74 -11.37 16 20 N -0.43 -14.09 10.09 -183.89 -1.86 -15.95 16 21 C 0.08 2.63 10.58 85.19 0.90 3.53 16 22 N -0.47 -22.36 9.46 -182.73 -1.73 -24.09 16 23 C 0.02 0.95 9.89 85.47 0.84 1.80 16 24 H 0.30 12.39 8.29 -92.71 -0.77 11.62 16 25 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 26 H 0.14 4.44 6.20 -2.91 -0.02 4.42 16 27 H 0.15 5.10 7.61 -2.91 -0.02 5.08 16 28 H 0.16 4.27 7.63 -2.91 -0.02 4.24 16 29 H 0.43 4.34 9.11 -74.06 -0.67 3.66 16 30 H 0.18 4.94 6.19 -2.91 -0.02 4.92 16 31 H 0.14 7.18 6.17 -2.91 -0.02 7.16 16 Total: -1.00 -59.04 285.44 3.00 -56.04 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.53 Total: 27.51 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.18 Total: -13.97 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -3.35 Total: -76.72 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.40 Total: -27.42 kcal Atomic # 14 Polarization: 32.52 SS G_CDS: 2.03 Total: 34.55 kcal Total: -59.04 3.00 -56.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242334696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.519 kcal (2) G-P(sol) polarization free energy of solvation -59.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds