Wall clock time and date at job start Mon Mar 30 2020 00:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 119.99817 * 2 1 4 4 H 1.48499 * 109.47131 * 269.99639 * 3 2 1 5 5 H 1.48496 * 109.47235 * 29.99818 * 3 2 1 6 6 H 1.48501 * 109.46855 * 149.99662 * 3 2 1 7 7 C 1.39933 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99607 * 197.40212 * 7 2 1 9 9 C 1.41436 * 120.00242 * 17.39991 * 7 2 1 10 10 C 1.40813 * 120.60609 * 203.41135 * 9 7 2 11 11 N 1.31501 * 120.68323 * 179.70401 * 10 9 7 12 12 C 1.31932 * 122.12917 * 0.27646 * 11 10 9 13 13 C 1.39727 * 121.14343 * 359.97438 * 12 11 10 14 14 C 1.48282 * 120.41499 * 179.97438 * 13 12 11 15 15 C 1.39761 * 120.44086 * 0.02562 * 14 13 12 16 16 C 1.38291 * 118.39094 * 180.02562 * 15 14 13 17 17 C 1.39490 * 119.17893 * 0.02562 * 16 15 14 18 18 C 1.47923 * 119.59590 * 180.02562 * 17 16 15 19 19 O 1.21457 * 119.99682 * 359.97438 * 18 17 16 20 20 O 1.34704 * 120.00257 * 180.02562 * 18 17 16 21 21 N 1.32827 * 120.80563 * 359.97438 * 17 16 15 22 22 C 1.31314 * 121.76369 * 359.69800 * 21 17 16 23 23 C 1.39255 * 119.16593 * 0.02562 * 13 12 11 24 24 H 0.97010 * 120.00129 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.65280 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.42348 * 179.97438 * 12 11 10 27 27 H 1.08001 * 120.80353 * 0.02562 * 15 14 13 28 28 H 1.08006 * 120.40816 * 179.97438 * 16 15 14 29 29 H 0.96695 * 117.00214 * 180.02562 * 20 18 17 30 30 H 1.08006 * 119.63439 * 180.30585 * 22 21 17 31 31 H 1.07996 * 120.95842 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0509 -1.2331 0.2803 9 6 1.3493 -2.4089 -0.3652 10 6 1.8319 -3.6562 0.0755 11 7 1.2174 -4.7697 -0.2588 12 6 0.1375 -4.7748 -1.0168 13 6 -0.4090 -3.5847 -1.5040 14 6 -1.6230 -3.6092 -2.3552 15 6 -2.2355 -4.8227 -2.6801 16 6 -3.3653 -4.7963 -3.4772 17 6 -3.8516 -3.5688 -3.9272 18 6 -5.0597 -3.5298 -4.7798 19 8 -5.6216 -4.5626 -5.0844 20 8 -5.5361 -2.3490 -5.2194 21 7 -3.2436 -2.4345 -3.5986 22 6 -2.1727 -2.4191 -2.8387 23 6 0.2012 -2.3754 -1.1810 24 1 -0.4851 0.8401 -0.0004 25 1 2.7133 -3.6984 0.6981 26 1 -0.3320 -5.7151 -1.2650 27 1 -1.8362 -5.7584 -2.3174 28 1 -3.8644 -5.7149 -3.7486 29 1 -6.3281 -2.3739 -5.7735 30 1 -1.7087 -1.4764 -2.5888 31 1 -0.1969 -1.4384 -1.5414 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242336178.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:47 Heat of formation + Delta-G solvation = -35.027333 kcal Electronic energy + Delta-G solvation = -18945.272682 eV Core-core repulsion = 15769.955444 eV Total energy + Delta-G solvation = -3175.317238 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62359 -39.45385 -38.25236 -36.13016 -34.33868 -33.31039 -32.00001 -30.54650 -29.16696 -25.95725 -25.08863 -23.73504 -22.09884 -21.49210 -20.58775 -18.29935 -17.74249 -17.43198 -16.14700 -15.94390 -15.74483 -15.46575 -14.98820 -14.49233 -14.15923 -13.67808 -13.54255 -13.18386 -12.95412 -12.55522 -12.27039 -11.73422 -11.62076 -11.58999 -11.46442 -11.14804 -10.85169 -10.71340 -10.10684 -10.04692 -9.60360 -9.48218 -9.43909 -8.33264 -8.13033 -7.59749 -7.05035 -4.70025 0.47188 1.39513 2.15101 2.57950 2.89281 2.91228 2.93994 2.96882 3.04383 3.72039 4.01713 4.40482 4.42562 5.00327 5.02427 5.08263 5.18599 5.42087 5.51759 5.76610 5.80376 6.15400 6.17147 6.28287 6.36394 6.50598 6.69680 6.77734 6.88496 6.95814 7.36891 7.59567 7.63755 7.72304 8.06118 8.18374 8.43817 8.47102 9.37463 9.85843 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.004968 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.339101 B = 5634.338898 C = 6878.260284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.445 4.445 8 H 0.087 0.913 9 C 0.059 3.941 10 C -0.008 4.008 11 N -0.467 5.467 12 C -0.019 4.019 13 C -0.105 4.105 14 C -0.012 4.012 15 C -0.096 4.096 16 C -0.096 4.096 17 C 0.050 3.950 18 C 0.549 3.451 19 O -0.518 6.518 20 O -0.493 6.493 21 N -0.429 5.429 22 C 0.097 3.903 23 C -0.107 4.107 24 H 0.288 0.712 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.408 0.592 30 H 0.172 0.828 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 -1.272 -5.789 8.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.474 4.474 8 H 0.105 0.895 9 C 0.055 3.945 10 C -0.169 4.169 11 N -0.174 5.174 12 C -0.177 4.177 13 C -0.108 4.108 14 C -0.015 4.015 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.085 4.085 18 C 0.392 3.608 19 O -0.407 6.407 20 O -0.303 6.303 21 N -0.140 5.140 22 C -0.064 4.064 23 C -0.133 4.133 24 H 0.099 0.901 25 H 0.148 0.852 26 H 0.141 0.859 27 H 0.165 0.835 28 H 0.164 0.836 29 H 0.266 0.734 30 H 0.189 0.811 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.646 -1.400 -5.655 8.112 hybrid contribution -0.253 0.834 -0.260 0.909 sum -5.899 -0.566 -5.915 8.373 Atomic orbital electron populations 1.69745 1.07746 1.30165 1.33495 1.26004 0.94852 1.01835 0.91832 0.86177 0.80479 0.79818 0.79651 1.18954 1.20026 1.18326 1.19623 0.98300 0.90667 1.38790 0.89494 1.18472 0.92093 0.93890 0.90052 1.22631 1.02221 0.87949 1.04148 1.66973 1.07658 1.31918 1.10874 1.21781 0.96810 0.95197 1.03912 1.19306 0.94893 0.96066 1.00525 1.20341 0.94205 0.93646 0.93279 1.21676 0.94541 0.98942 0.96961 1.21915 0.95831 0.98050 0.95864 1.19794 0.96103 0.90578 1.02013 1.20564 0.82678 0.80781 0.76777 1.90876 1.58812 1.34836 1.56159 1.84729 1.46832 1.34074 1.64626 1.67577 1.07783 1.28628 1.09997 1.23138 0.91299 0.98879 0.93092 1.21904 0.97536 0.95909 0.97906 0.90128 0.85234 0.85858 0.83465 0.83630 0.73423 0.81095 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.12 10.92 55.55 0.61 -17.51 16 2 C 0.07 1.66 5.18 -17.34 -0.09 1.57 16 3 Si 0.92 16.84 29.59 -169.99 -5.03 11.81 16 4 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 5 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 7 C -0.44 -10.51 9.08 -37.73 -0.34 -10.85 16 8 H 0.09 1.95 7.90 -52.48 -0.41 1.54 16 9 C 0.06 1.43 5.59 -106.71 -0.60 0.84 16 10 C -0.01 -0.19 10.96 -16.72 -0.18 -0.38 16 11 N -0.47 -10.69 10.32 -12.27 -0.13 -10.82 16 12 C -0.02 -0.40 10.61 -16.95 -0.18 -0.58 16 13 C -0.10 -2.19 5.88 -104.83 -0.62 -2.81 16 14 C -0.01 -0.21 5.90 -104.64 -0.62 -0.83 16 15 C -0.10 -1.47 9.53 -38.99 -0.37 -1.84 16 16 C -0.10 -1.40 9.62 -39.10 -0.38 -1.77 16 17 C 0.05 0.81 6.75 -83.00 -0.56 0.25 16 18 C 0.55 8.02 8.32 34.70 0.29 8.31 16 19 O -0.52 -8.11 17.10 -19.23 -0.33 -8.44 16 20 O -0.49 -5.98 13.24 -40.50 -0.54 -6.52 16 21 N -0.43 -7.54 10.10 -9.55 -0.10 -7.63 16 22 C 0.10 1.75 10.60 -17.22 -0.18 1.57 16 23 C -0.11 -2.47 8.18 -38.21 -0.31 -2.78 16 24 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 25 H 0.13 2.77 8.06 -52.49 -0.42 2.35 16 26 H 0.12 2.20 6.26 -52.49 -0.33 1.88 16 27 H 0.15 1.92 6.32 -52.49 -0.33 1.59 16 28 H 0.15 1.80 7.63 -52.48 -0.40 1.40 16 29 H 0.41 2.62 9.11 45.56 0.42 3.04 16 30 H 0.17 3.07 6.28 -52.48 -0.33 2.75 16 31 H 0.14 3.09 4.46 -52.49 -0.23 2.86 16 LS Contribution 283.09 15.07 4.27 4.27 Total: -1.00 -27.91 283.09 -6.57 -34.48 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -1.18 Total: 9.68 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -4.14 Total: -9.31 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.38 Total: -35.96 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.86 Total: -14.96 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.91 -6.57 -34.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242336178.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.552 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds