Wall clock time and date at job start Mon Mar 30 2020 00:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 119.99817 * 2 1 4 4 H 1.48499 * 109.47131 * 269.99639 * 3 2 1 5 5 H 1.48496 * 109.47235 * 29.99818 * 3 2 1 6 6 H 1.48501 * 109.46855 * 149.99662 * 3 2 1 7 7 C 1.39933 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99607 * 197.40212 * 7 2 1 9 9 C 1.41436 * 120.00242 * 17.39991 * 7 2 1 10 10 C 1.40813 * 120.60609 * 203.41135 * 9 7 2 11 11 N 1.31501 * 120.68323 * 179.70401 * 10 9 7 12 12 C 1.31932 * 122.12917 * 0.27646 * 11 10 9 13 13 C 1.39727 * 121.14343 * 359.97438 * 12 11 10 14 14 C 1.48282 * 120.41499 * 179.97438 * 13 12 11 15 15 C 1.39761 * 120.44086 * 0.02562 * 14 13 12 16 16 C 1.38291 * 118.39094 * 180.02562 * 15 14 13 17 17 C 1.39490 * 119.17893 * 0.02562 * 16 15 14 18 18 C 1.47923 * 119.59590 * 180.02562 * 17 16 15 19 19 O 1.21457 * 119.99682 * 359.97438 * 18 17 16 20 20 O 1.34704 * 120.00257 * 180.02562 * 18 17 16 21 21 N 1.32827 * 120.80563 * 359.97438 * 17 16 15 22 22 C 1.31314 * 121.76369 * 359.69800 * 21 17 16 23 23 C 1.39255 * 119.16593 * 0.02562 * 13 12 11 24 24 H 0.97010 * 120.00129 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.65280 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.42348 * 179.97438 * 12 11 10 27 27 H 1.08001 * 120.80353 * 0.02562 * 15 14 13 28 28 H 1.08006 * 120.40816 * 179.97438 * 16 15 14 29 29 H 0.96695 * 117.00214 * 180.02562 * 20 18 17 30 30 H 1.08006 * 119.63439 * 180.30585 * 22 21 17 31 31 H 1.07996 * 120.95842 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0509 -1.2331 0.2803 9 6 1.3493 -2.4089 -0.3652 10 6 1.8319 -3.6562 0.0755 11 7 1.2174 -4.7697 -0.2588 12 6 0.1375 -4.7748 -1.0168 13 6 -0.4090 -3.5847 -1.5040 14 6 -1.6230 -3.6092 -2.3552 15 6 -2.2355 -4.8227 -2.6801 16 6 -3.3653 -4.7963 -3.4772 17 6 -3.8516 -3.5688 -3.9272 18 6 -5.0597 -3.5298 -4.7798 19 8 -5.6216 -4.5626 -5.0844 20 8 -5.5361 -2.3490 -5.2194 21 7 -3.2436 -2.4345 -3.5986 22 6 -2.1727 -2.4191 -2.8387 23 6 0.2012 -2.3754 -1.1810 24 1 -0.4851 0.8401 -0.0004 25 1 2.7133 -3.6984 0.6981 26 1 -0.3320 -5.7151 -1.2650 27 1 -1.8362 -5.7584 -2.3174 28 1 -3.8644 -5.7149 -3.7486 29 1 -6.3281 -2.3739 -5.7735 30 1 -1.7087 -1.4764 -2.5888 31 1 -0.1969 -1.4384 -1.5414 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242336178.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:46 Heat of formation + Delta-G solvation = -52.394465 kcal Electronic energy + Delta-G solvation = -18946.025777 eV Core-core repulsion = 15769.955444 eV Total energy + Delta-G solvation = -3176.070333 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.85699 -40.75230 -39.82441 -37.19450 -36.03348 -34.77455 -33.31401 -32.25118 -30.65344 -27.66406 -26.41795 -25.17140 -23.43121 -23.09784 -22.05936 -19.44325 -19.31095 -18.70530 -17.61315 -17.50871 -16.98632 -16.87077 -16.45025 -16.01965 -15.56482 -15.01434 -14.93011 -14.40412 -14.33610 -14.21225 -13.76923 -13.29695 -13.17188 -13.15140 -12.67878 -12.63991 -12.21517 -12.03338 -11.73892 -11.48231 -11.23472 -10.84338 -10.74013 -10.04946 -9.85146 -9.19386 -8.72509 -6.48176 -0.85037 0.13419 0.68543 0.95345 1.41647 1.44782 1.54256 1.55991 1.85874 2.18178 2.60274 2.82395 3.15477 3.62427 3.67893 3.81008 3.82519 3.96995 4.13837 4.29663 4.48429 4.63220 4.77058 4.85144 4.95842 5.11895 5.15019 5.27982 5.39889 5.43906 5.70461 5.85698 5.94245 6.41997 6.57370 6.70272 6.72927 6.96972 7.63417 8.20294 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.004968 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.339101 B = 5634.338898 C = 6878.260284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.040 3.960 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.476 4.476 8 H 0.088 0.912 9 C 0.036 3.964 10 C -0.030 4.030 11 N -0.479 5.479 12 C -0.023 4.023 13 C -0.098 4.098 14 C -0.036 4.036 15 C -0.078 4.078 16 C -0.087 4.087 17 C 0.045 3.955 18 C 0.555 3.445 19 O -0.528 6.528 20 O -0.493 6.493 21 N -0.445 5.445 22 C 0.092 3.908 23 C -0.130 4.130 24 H 0.294 0.706 25 H 0.137 0.863 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.175 0.825 29 H 0.433 0.567 30 H 0.160 0.840 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 -1.895 -6.758 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.177 4.177 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.505 4.505 8 H 0.106 0.894 9 C 0.032 3.968 10 C -0.190 4.190 11 N -0.186 5.186 12 C -0.181 4.181 13 C -0.100 4.100 14 C -0.039 4.039 15 C -0.103 4.103 16 C -0.107 4.107 17 C -0.090 4.090 18 C 0.398 3.602 19 O -0.418 6.418 20 O -0.306 6.306 21 N -0.156 5.156 22 C -0.069 4.069 23 C -0.156 4.156 24 H 0.105 0.895 25 H 0.155 0.845 26 H 0.177 0.823 27 H 0.193 0.807 28 H 0.193 0.807 29 H 0.295 0.705 30 H 0.177 0.823 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.838 -2.019 -6.630 9.736 hybrid contribution -0.086 0.941 -0.078 0.948 sum -6.923 -1.078 -6.709 9.701 Atomic orbital electron populations 1.69788 1.08971 1.31308 1.33852 1.26761 0.95495 1.04549 0.90897 0.85156 0.79164 0.75641 0.79629 1.18640 1.19382 1.17982 1.19871 0.98655 0.91610 1.40375 0.89382 1.18778 0.92888 0.94519 0.90665 1.22777 1.03030 0.88074 1.05125 1.67005 1.08435 1.31699 1.11470 1.22378 0.96205 0.96639 1.02854 1.19494 0.95371 0.95286 0.99893 1.20209 0.94101 0.94980 0.94571 1.21960 0.93923 0.98738 0.95632 1.22202 0.95223 0.98591 0.94709 1.20283 0.96341 0.90811 1.01577 1.20272 0.82209 0.81152 0.76519 1.90880 1.59024 1.35277 1.56570 1.84674 1.48222 1.32828 1.64842 1.67572 1.07861 1.29699 1.10432 1.22978 0.91678 0.98704 0.93528 1.21956 0.98078 0.96732 0.98813 0.89482 0.84534 0.82316 0.80730 0.80749 0.70469 0.82305 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.46 10.92 21.82 0.24 -38.22 16 2 C 0.04 1.82 5.18 85.25 0.44 2.26 16 3 Si 0.98 34.74 29.59 68.60 2.03 36.77 16 4 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 5 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 7 C -0.48 -23.27 9.08 23.47 0.21 -23.06 16 8 H 0.09 4.10 7.90 -2.91 -0.02 4.08 16 9 C 0.04 1.79 5.59 -21.22 -0.12 1.67 16 10 C -0.03 -1.42 10.96 85.37 0.94 -0.49 16 11 N -0.48 -21.85 10.32 -192.73 -1.99 -23.84 16 12 C -0.02 -0.92 10.61 85.04 0.90 -0.02 16 13 C -0.10 -4.07 5.88 -20.00 -0.12 -4.19 16 14 C -0.04 -1.25 5.90 -19.88 -0.12 -1.37 16 15 C -0.08 -2.13 9.53 22.65 0.22 -1.92 16 16 C -0.09 -2.25 9.62 22.58 0.22 -2.03 16 17 C 0.05 1.36 6.75 41.86 0.28 1.64 16 18 C 0.56 14.75 8.32 70.39 0.59 15.33 16 19 O -0.53 -14.91 17.10 19.97 0.34 -14.56 16 20 O -0.49 -10.69 13.24 -56.14 -0.74 -11.44 16 21 N -0.44 -15.18 10.10 -184.14 -1.86 -17.03 16 22 C 0.09 3.30 10.60 85.13 0.90 4.21 16 23 C -0.13 -6.19 8.18 23.16 0.19 -6.00 16 24 H 0.29 12.57 8.30 -92.70 -0.77 11.80 16 25 H 0.14 6.05 8.06 -2.91 -0.02 6.03 16 26 H 0.16 5.18 6.26 -2.91 -0.02 5.16 16 27 H 0.18 3.78 6.32 -2.91 -0.02 3.77 16 28 H 0.18 3.53 7.63 -2.91 -0.02 3.50 16 29 H 0.43 4.27 9.11 -74.06 -0.67 3.60 16 30 H 0.16 5.98 6.28 -2.91 -0.02 5.96 16 31 H 0.13 6.16 4.46 -2.91 -0.01 6.14 16 Total: -1.00 -60.25 283.09 3.09 -57.16 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.54 Total: 25.12 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 4.53 Total: -13.96 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -3.61 Total: -79.10 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.40 Total: -26.00 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Total: -60.25 3.09 -57.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242336178.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.767 kcal (2) G-P(sol) polarization free energy of solvation -60.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds