Wall clock time and date at job start Mon Mar 30 2020 00:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86794 * 120.00033 * 2 1 4 4 H 1.48503 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47225 * 300.00033 * 3 2 1 6 6 H 1.48501 * 109.47193 * 59.99978 * 3 2 1 7 7 C 1.40042 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99448 * 180.02562 * 7 2 1 9 9 C 1.41414 * 120.00351 * 359.97438 * 7 2 1 10 10 C 1.40494 * 119.77682 * 180.02562 * 9 7 2 11 11 C 1.39341 * 118.83085 * 180.02562 * 10 9 7 12 12 C 1.48314 * 120.82880 * 180.26862 * 11 10 9 13 13 C 1.39751 * 120.44210 * 179.71561 * 12 11 10 14 14 C 1.38310 * 118.38692 * 180.02562 * 13 12 11 15 15 C 1.39463 * 119.18081 * 0.02562 * 14 13 12 16 16 C 1.47976 * 119.59930 * 180.02562 * 15 14 13 17 17 O 1.21443 * 119.99863 * 359.97438 * 16 15 14 18 18 O 1.34692 * 120.00250 * 180.02562 * 16 15 14 19 19 N 1.32813 * 120.80814 * 359.96672 * 15 14 13 20 20 C 1.31338 * 121.76459 * 359.75596 * 19 15 14 21 21 C 1.40085 * 118.34551 * 359.97438 * 11 10 9 22 22 C 1.38520 * 119.41423 * 359.97438 * 21 11 10 23 23 N 1.31458 * 121.15340 * 0.02562 * 22 21 11 24 24 H 0.97003 * 119.99660 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.58215 * 359.97438 * 10 9 7 26 26 H 1.07999 * 120.80447 * 359.97438 * 13 12 11 27 27 H 1.07998 * 120.41449 * 179.97438 * 14 13 12 28 28 H 0.96707 * 117.00281 * 179.97438 * 18 16 15 29 29 H 1.07997 * 119.63120 * 180.26145 * 20 19 15 30 30 H 1.08006 * 120.29025 * 180.02562 * 21 11 10 31 31 H 1.08001 * 119.41674 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0876 -1.2128 -0.0001 9 6 1.3004 -2.4375 -0.0005 10 6 2.0076 -3.6515 -0.0005 11 6 1.2911 -4.8466 -0.0011 12 6 1.9925 -6.1533 0.0049 13 6 1.2658 -7.3470 0.0102 14 6 1.9632 -8.5414 0.0162 15 6 3.3575 -8.5147 0.0172 16 6 4.1130 -9.7871 0.0230 17 8 3.5186 -10.8461 0.0274 18 8 5.4598 -9.7707 0.0246 19 7 4.0158 -7.3611 0.0119 20 6 3.3886 -6.2072 0.0007 21 6 -0.1083 -4.7830 -0.0011 22 6 -0.7332 -3.5467 0.0000 23 7 -0.0359 -2.4323 0.0006 24 1 -0.4850 0.8401 -0.0004 25 1 3.0876 -3.6583 -0.0010 26 1 0.1858 -7.3370 0.0106 27 1 1.4345 -9.4832 0.0209 28 1 5.9093 -10.6269 0.0288 29 1 3.9584 -5.2898 -0.0077 30 1 -0.6948 -5.6899 -0.0011 31 1 -1.8121 -3.4977 -0.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242338150.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:06 Heat of formation + Delta-G solvation = -22.657559 kcal Electronic energy + Delta-G solvation = -18676.126599 eV Core-core repulsion = 15501.345755 eV Total energy + Delta-G solvation = -3174.780844 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71334 -39.50327 -38.12163 -36.20829 -34.12027 -33.04389 -32.09134 -30.17179 -29.45471 -26.06468 -25.19313 -23.72512 -22.21222 -21.26918 -20.69269 -18.37522 -17.80223 -17.51875 -16.35594 -15.82822 -15.63575 -15.17829 -15.00435 -14.15324 -14.02083 -13.76607 -13.66104 -13.18699 -13.05417 -12.56838 -12.38898 -11.80214 -11.66785 -11.34405 -11.26328 -11.01987 -10.84908 -10.62321 -10.21611 -10.05440 -9.63315 -9.47905 -9.34787 -7.90399 -7.83035 -7.76310 -6.56212 -4.69674 0.38232 1.28803 2.17189 2.59247 2.82164 2.95578 3.02382 3.06368 3.09527 3.84151 3.98138 4.29140 4.62129 4.90157 4.93027 4.99899 5.08092 5.41387 5.66653 5.72403 5.92010 6.01243 6.13449 6.22858 6.29097 6.48253 6.60779 6.71443 6.95479 7.10498 7.28811 7.42501 7.60666 7.76797 7.96358 8.06383 8.46914 8.72364 9.92378 10.15738 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.003816 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.597446 B = 7335.933249 C = 8113.669773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.425 4.425 8 H 0.087 0.913 9 C 0.251 3.749 10 C -0.242 4.242 11 C -0.013 4.013 12 C -0.022 4.022 13 C -0.088 4.088 14 C -0.098 4.098 15 C 0.055 3.945 16 C 0.548 3.452 17 O -0.516 6.516 18 O -0.493 6.493 19 N -0.431 5.431 20 C 0.097 3.903 21 C -0.302 4.302 22 C 0.128 3.872 23 N -0.478 5.478 24 H 0.275 0.725 25 H 0.107 0.893 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.409 0.591 29 H 0.171 0.829 30 H 0.099 0.901 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 -10.051 0.009 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.159 4.159 3 Si 0.733 3.267 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.456 4.456 8 H 0.105 0.895 9 C 0.127 3.873 10 C -0.265 4.265 11 C -0.020 4.020 12 C -0.024 4.024 13 C -0.114 4.114 14 C -0.118 4.118 15 C -0.080 4.080 16 C 0.391 3.609 17 O -0.405 6.405 18 O -0.303 6.303 19 N -0.141 5.141 20 C -0.064 4.064 21 C -0.325 4.325 22 C -0.038 4.038 23 N -0.191 5.191 24 H 0.086 0.914 25 H 0.125 0.875 26 H 0.166 0.834 27 H 0.165 0.835 28 H 0.267 0.733 29 H 0.188 0.812 30 H 0.117 0.883 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.022 -9.055 0.014 9.908 hybrid contribution 0.093 -0.693 0.003 0.699 sum 4.115 -9.748 0.017 10.581 Atomic orbital electron populations 1.70128 1.07277 1.28020 1.27749 1.26098 0.94955 1.01287 0.93553 0.86238 0.80868 0.80903 0.78696 1.18246 1.19714 1.19712 1.19729 0.94473 0.89312 1.42085 0.89468 1.18563 0.88329 0.91663 0.88744 1.21926 0.98745 0.92533 1.13283 1.18421 0.93365 0.89754 1.00449 1.20439 0.94391 0.94440 0.93105 1.21726 1.01395 0.90637 0.97616 1.21950 0.93033 0.99986 0.96857 1.19818 0.90386 0.90442 1.07370 1.20550 0.80598 0.88188 0.71535 1.90881 1.70548 1.32092 1.46958 1.84719 1.20273 1.40304 1.84968 1.67578 1.40508 0.97638 1.08410 1.23089 0.91493 0.95456 0.96392 1.21339 0.93105 0.98253 1.19763 1.22487 0.98987 0.88459 0.93834 1.68720 1.07254 1.26896 1.16234 0.91420 0.87506 0.83359 0.83536 0.73317 0.81211 0.88275 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.01 11.46 55.55 0.64 -17.38 16 2 C 0.07 1.62 5.50 -17.34 -0.10 1.52 16 3 Si 0.91 17.61 29.56 -169.99 -5.02 12.59 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.43 -10.66 9.14 -37.70 -0.34 -11.00 16 8 H 0.09 2.02 7.85 -52.48 -0.41 1.61 16 9 C 0.25 6.40 6.55 -85.02 -0.56 5.84 16 10 C -0.24 -5.37 9.24 -38.32 -0.35 -5.73 16 11 C -0.01 -0.27 5.91 -104.65 -0.62 -0.89 16 12 C -0.02 -0.37 5.90 -104.64 -0.62 -0.98 16 13 C -0.09 -1.29 9.55 -38.99 -0.37 -1.66 16 14 C -0.10 -1.35 9.62 -39.10 -0.38 -1.73 16 15 C 0.06 0.84 6.75 -83.00 -0.56 0.28 16 16 C 0.55 7.55 8.32 34.72 0.29 7.84 16 17 O -0.52 -7.72 17.10 -19.22 -0.33 -8.05 16 18 O -0.49 -5.55 13.24 -40.47 -0.54 -6.09 16 19 N -0.43 -7.02 10.10 -9.55 -0.10 -7.11 16 20 C 0.10 1.59 10.61 -17.21 -0.18 1.41 16 21 C -0.30 -6.08 9.53 -38.78 -0.37 -6.45 16 22 C 0.13 2.86 11.17 -17.61 -0.20 2.67 16 23 N -0.48 -12.40 7.84 -11.21 -0.09 -12.49 16 24 H 0.27 6.27 8.29 -40.82 -0.34 5.93 16 25 H 0.11 2.12 6.35 -52.49 -0.33 1.79 16 26 H 0.15 1.88 6.39 -52.49 -0.34 1.55 16 27 H 0.15 1.72 7.63 -52.49 -0.40 1.32 16 28 H 0.41 2.31 9.11 45.56 0.42 2.72 16 29 H 0.17 2.59 6.30 -52.49 -0.33 2.26 16 30 H 0.10 1.68 6.38 -52.48 -0.33 1.35 16 31 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 284.74 15.07 4.29 4.29 Total: -1.00 -29.95 284.74 -6.79 -36.74 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -1.29 Total: 6.38 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -4.35 Total: -8.88 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.45 Total: -36.98 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.86 Total: -14.13 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.02 Total: 12.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.95 -6.79 -36.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242338150.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.080 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds